More than 300 homologs were found in PanDaTox collection
for query gene Hoch_5014 on replicon NC_013440
Organism: Haliangium ochraceum DSM 14365



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013440  Hoch_5014  histone family protein DNA-binding protein  100 
 
 
105 aa  213  5e-55  Haliangium ochraceum DSM 14365  Bacteria  normal  0.55821  normal  0.0418897 
 
 
-
 
NC_011891  A2cp1_2467  histone family protein DNA-binding protein  43 
 
 
90 aa  74.3  0.0000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.327101  n/a   
 
 
-
 
NC_011145  AnaeK_2379  histone family protein DNA-binding protein  43 
 
 
90 aa  74.3  0.0000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.18589  n/a   
 
 
-
 
NC_007760  Adeh_1488  histone-like DNA-binding protein  43 
 
 
90 aa  74.3  0.0000000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1090  histone family protein DNA-binding protein  38.61 
 
 
90 aa  69.3  0.00000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1424  integration host factor, alpha subunit  36.89 
 
 
93 aa  66.6  0.0000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000184784  n/a   
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  43.3 
 
 
90 aa  66.6  0.0000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_011769  DvMF_0500  histone family protein DNA-binding protein  38 
 
 
90 aa  65.9  0.0000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000759527 
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  42.27 
 
 
94 aa  65.5  0.0000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  42.27 
 
 
94 aa  65.1  0.0000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_009943  Dole_1717  histone family protein DNA-binding protein  42.27 
 
 
90 aa  63.9  0.0000000007  Desulfococcus oleovorans Hxd3  Bacteria  unclonable  0.0000000000293556  n/a   
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  38.14 
 
 
90 aa  63.9  0.0000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  35.64 
 
 
90 aa  63.5  0.0000000009  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  35.64 
 
 
90 aa  63.5  0.0000000009  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  42.27 
 
 
91 aa  63.2  0.000000001  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
NC_013440  Hoch_3742  integration host factor, alpha subunit  38.61 
 
 
100 aa  62.8  0.000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.266099  normal  0.554438 
 
 
-
 
NC_009483  Gura_2622  histone family protein DNA-binding protein  35.92 
 
 
92 aa  62  0.000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.349381  n/a   
 
 
-
 
NC_009943  Dole_2857  histone family protein DNA-binding protein  40.21 
 
 
90 aa  62.8  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000465869  n/a   
 
 
-
 
NC_010676  Bphyt_4682  histone family protein DNA-binding protein  37.62 
 
 
92 aa  61.6  0.000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0505442  normal 
 
 
-
 
NC_007952  Bxe_B0956  DNA-binding protein HU-alpha  37.62 
 
 
92 aa  61.6  0.000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.667832  normal 
 
 
-
 
NC_011899  Hore_10570  histone family protein DNA-binding protein  41 
 
 
137 aa  61.6  0.000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  40.82 
 
 
90 aa  61.6  0.000000004  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  37.62 
 
 
90 aa  61.6  0.000000004  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  40.82 
 
 
90 aa  61.6  0.000000004  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  40.82 
 
 
90 aa  61.6  0.000000004  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1546  histone family protein DNA-binding protein  35.92 
 
 
92 aa  61.6  0.000000004  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  4.0402e-16  n/a   
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  41 
 
 
91 aa  61.2  0.000000005  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  36.9 
 
 
91 aa  61.2  0.000000005  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  36.9 
 
 
91 aa  61.2  0.000000005  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  35.64 
 
 
90 aa  60.8  0.000000006  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  37.14 
 
 
92 aa  60.8  0.000000006  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_010322  PputGB1_5361  histone family protein DNA-binding protein  34.65 
 
 
101 aa  60.8  0.000000006  Pseudomonas putida GB-1  Bacteria  normal  normal  0.322215 
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  35.64 
 
 
90 aa  60.8  0.000000006  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_010501  PputW619_0160  histone family protein DNA-binding protein  33.66 
 
 
99 aa  60.8  0.000000006  Pseudomonas putida W619  Bacteria  normal  0.982339  normal  0.332624 
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  35.64 
 
 
95 aa  60.5  0.000000007  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5600  nucleoid protein HU alpha subunit  34.65 
 
 
91 aa  60.5  0.000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.375895  normal 
 
 
-
 
NC_008609  Ppro_1912  histone family protein DNA-binding protein  39 
 
 
88 aa  60.5  0.000000008  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1051  histone family protein DNA-binding protein  38.14 
 
 
89 aa  60.5  0.000000008  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.00000000000000497636  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_009439  Pmen_4401  nucleoid protein HU alpha subunit  34.65 
 
 
90 aa  60.1  0.000000009  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.177499 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  60.1  0.000000009  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  60.1  0.000000009  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_002947  PP_5313  histone family protein DNA-binding protein  33.66 
 
 
99 aa  60.1  0.00000001  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0463079 
 
 
-
 
NC_007005  Psyr_5027  histone-like DNA-binding protein  33.7 
 
 
91 aa  59.7  0.00000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.705107 
 
 
-
 
NC_011883  Ddes_0087  histone family protein DNA-binding protein  38.78 
 
 
91 aa  60.1  0.00000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0083  DNA-binding protein HU (DNA-binding protein II)  38 
 
 
90 aa  59.7  0.00000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_5222  histone family protein DNA-binding protein  33.66 
 
 
99 aa  60.1  0.00000001  Pseudomonas putida F1  Bacteria  normal  normal  0.60947 
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  40.82 
 
 
96 aa  59.3  0.00000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_013739  Cwoe_1870  histone family protein DNA-binding protein  38.14 
 
 
91 aa  59.3  0.00000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0130937 
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  40.21 
 
 
96 aa  59.3  0.00000002  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_011146  Gbem_1996  histone family protein DNA-binding protein  34.65 
 
 
92 aa  58.9  0.00000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2224  histone family protein DNA-binding protein  34.65 
 
 
92 aa  58.9  0.00000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000923552 
 
 
-
 
NC_008009  Acid345_4704  histone-like DNA-binding protein  34.31 
 
 
93 aa  59.3  0.00000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.833222 
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  33.66 
 
 
90 aa  58.5  0.00000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1886  integration host factor, alpha subunit  34.65 
 
 
99 aa  58.2  0.00000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.067674 
 
 
-
 
NC_004578  PSPTO_5472  DNA-binding protein HU family  33.7 
 
 
111 aa  58.9  0.00000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  34.65 
 
 
90 aa  58.2  0.00000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  36 
 
 
91 aa  58.5  0.00000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  34.65 
 
 
90 aa  58.2  0.00000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_010655  Amuc_1896  histone family protein DNA-binding protein  40.21 
 
 
89 aa  58.5  0.00000003  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  34.65 
 
 
90 aa  58.2  0.00000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  34.65 
 
 
90 aa  58.2  0.00000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  34.65 
 
 
90 aa  58.2  0.00000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  35.64 
 
 
90 aa  57.8  0.00000004  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  38.61 
 
 
91 aa  58.2  0.00000004  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  34.65 
 
 
101 aa  58.2  0.00000004  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  34.65 
 
 
90 aa  58.2  0.00000004  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  35.64 
 
 
90 aa  57.8  0.00000005  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_011145  AnaeK_1909  integration host factor subunit alpha  35.64 
 
 
113 aa  57.8  0.00000005  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  36.63 
 
 
90 aa  57.8  0.00000005  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_011891  A2cp1_1994  integration host factor subunit alpha  35.64 
 
 
113 aa  57.8  0.00000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.110028  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  33.66 
 
 
90 aa  57.8  0.00000005  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1118  HU family DNA-binding protein  52.08 
 
 
91 aa  57.8  0.00000005  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000128568  normal 
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  33.66 
 
 
90 aa  57.4  0.00000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  35.64 
 
 
90 aa  57.4  0.00000007  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  38.1 
 
 
90 aa  57.4  0.00000007  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_007760  Adeh_1969  integration host factor subunit alpha  34.65 
 
 
113 aa  57.4  0.00000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.0019696  n/a   
 
 
-
 
NC_012850  Rleg_1341  histone family protein DNA-binding protein  37.62 
 
 
91 aa  57.4  0.00000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  33.66 
 
 
90 aa  57.4  0.00000007  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  37.11 
 
 
92 aa  57.4  0.00000007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  35.64 
 
 
90 aa  57  0.00000008  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_010730  SYO3AOP1_0867  histone family protein DNA-binding protein  35.92 
 
 
92 aa  57  0.00000009  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  2.6253e-16  n/a   
 
 
-
 
NC_002939  GSU1521  integration host factor, alpha subunit  33.66 
 
 
91 aa  56.2  0.0000001  Geobacter sulfurreducens PCA  Bacteria  normal  0.43426  n/a   
 
 
-
 
NC_013205  Aaci_0186  histone family protein DNA-binding protein  39.8 
 
 
90 aa  56.2  0.0000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0470  histone family protein DNA-binding protein  38.14 
 
 
94 aa  56.2  0.0000001  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7326  histone family protein DNA-binding protein  38.61 
 
 
92 aa  56.6  0.0000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.076405 
 
 
-
 
NC_010338  Caul_2219  histone family protein DNA-binding protein  35.64 
 
 
92 aa  56.6  0.0000001  Caulobacter sp. K31  Bacteria  normal  0.789532  normal  0.340698 
 
 
-
 
NC_008609  Ppro_2665  histone family protein DNA-binding protein  36.08 
 
 
91 aa  56.2  0.0000001  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.00920373  n/a   
 
 
-
 
NC_007517  Gmet_1417  histone-like DNA-binding protein  34.65 
 
 
91 aa  56.6  0.0000001  Geobacter metallireducens GS-15  Bacteria  decreased coverage  0.00000053245  normal  0.466182 
 
 
-
 
NC_007519  Dde_2058  histone-like DNA-binding protein  36.08 
 
 
90 aa  56.2  0.0000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.954956  n/a   
 
 
-
 
NC_010814  Glov_2356  histone family protein DNA-binding protein  35.64 
 
 
94 aa  56.2  0.0000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2337  histone-like DNA-binding protein  36.63 
 
 
90 aa  56.2  0.0000001  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000498066  n/a   
 
 
-
 
NC_011369  Rleg2_1250  histone family protein DNA-binding protein  37.62 
 
 
91 aa  56.6  0.0000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  35.64 
 
 
90 aa  56.6  0.0000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
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