More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2094 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_2094  HAD family hydrolase  100 
 
 
226 aa  452  1.0000000000000001e-126  Frankia sp. CcI3  Bacteria  normal  0.07906  normal 
 
 
-
 
NC_014210  Ndas_3369  HAD-superfamily subfamily IB hydrolase, TIGR01490  51.43 
 
 
249 aa  176  3e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3483  hypothetical protein  36.45 
 
 
207 aa  116  1.9999999999999998e-25  Saccharophagus degradans 2-40  Bacteria  normal  0.129655  normal  0.0813379 
 
 
-
 
NC_010557  BamMC406_5696  HAD family hydrolase  37.9 
 
 
231 aa  113  2.0000000000000002e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0878159 
 
 
-
 
NC_014151  Cfla_2800  HAD-superfamily subfamily IB hydrolase, TIGR01490  37.56 
 
 
275 aa  104  1e-21  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00283353 
 
 
-
 
NC_014158  Tpau_3910  HAD-superfamily subfamily IB hydrolase  36.15 
 
 
284 aa  96.7  3e-19  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_35940  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.6 
 
 
280 aa  93.6  2e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.330222  normal  0.156171 
 
 
-
 
NC_013757  Gobs_0590  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.11 
 
 
280 aa  89.7  3e-17  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.841556  n/a   
 
 
-
 
NC_013510  Tcur_4446  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.39 
 
 
290 aa  88.2  9e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3259  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.7 
 
 
263 aa  88.2  9e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.107889  normal  0.303521 
 
 
-
 
NC_013093  Amir_0274  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.86 
 
 
270 aa  87.8  1e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1214  HAD family hydrolase  31.82 
 
 
225 aa  87.4  1e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0597827  normal 
 
 
-
 
NC_009565  TBFG_13691  hypothetical protein  34.26 
 
 
287 aa  87  2e-16  Mycobacterium tuberculosis F11  Bacteria  normal  0.148419  normal  0.360878 
 
 
-
 
NC_009077  Mjls_5194  HAD family hydrolase  32.86 
 
 
285 aa  86.7  3e-16  Mycobacterium sp. JLS  Bacteria  normal  0.421915  hitchhiker  0.000238579 
 
 
-
 
NC_008146  Mmcs_4807  HAD family hydrolase  32.86 
 
 
285 aa  86.3  3e-16  Mycobacterium sp. MCS  Bacteria  normal  0.0376166  n/a   
 
 
-
 
NC_008705  Mkms_4893  HAD family hydrolase  32.86 
 
 
285 aa  86.3  3e-16  Mycobacterium sp. KMS  Bacteria  normal  normal  0.271167 
 
 
-
 
NC_007760  Adeh_1167  HAD family hydrolase  31.36 
 
 
225 aa  85.1  8e-16  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0255  HAD-superfamily hydrolase  32.89 
 
 
286 aa  85.1  8e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.185675  normal 
 
 
-
 
NC_013757  Gobs_4585  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.49 
 
 
306 aa  84.7  0.000000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.601592  n/a   
 
 
-
 
NC_014151  Cfla_2740  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.98 
 
 
288 aa  83.6  0.000000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0297875 
 
 
-
 
NC_009338  Mflv_1382  HAD family hydrolase  30.17 
 
 
307 aa  84  0.000000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0503045  normal  0.084913 
 
 
-
 
NC_013595  Sros_0542  Phosphoserine phosphatase-like protein  32.31 
 
 
289 aa  84.3  0.000000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.260991 
 
 
-
 
NC_013441  Gbro_4653  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.65 
 
 
493 aa  84  0.000000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0362  HAD family hydrolase  32.13 
 
 
289 aa  84  0.000000000000002  Nocardioides sp. JS614  Bacteria  hitchhiker  0.00108694  n/a   
 
 
-
 
NC_013235  Namu_0916  HAD-superfamily subfamily IB hydrolase, TIGR01490  29.86 
 
 
297 aa  82.8  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1328  HAD-superfamily subfamily IB hydrolase, TIGR01490  30.91 
 
 
225 aa  81.6  0.000000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6219  HAD-superfamily subfamily IB hydrolase TIGR01490  34.67 
 
 
289 aa  81.6  0.000000000000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_1226  HAD-superfamily subfamily IB hydrolase, TIGR01490  30.91 
 
 
225 aa  81.6  0.000000000000008  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0320  HAD-superfamily subfamily IB hydrolase, TIGR01490  42.74 
 
 
258 aa  81.6  0.000000000000009  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.369561  n/a   
 
 
-
 
NC_013521  Sked_33380  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.92 
 
 
265 aa  81.3  0.00000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.156612  normal 
 
 
-
 
NC_013131  Caci_0054  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.31 
 
 
281 aa  80.9  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0674  HAD family hydrolase  32.73 
 
 
300 aa  79.3  0.00000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0687  HAD family hydrolase  32.73 
 
 
300 aa  79.3  0.00000000000004  Mycobacterium sp. KMS  Bacteria  normal  normal  0.164292 
 
 
-
 
NC_009077  Mjls_0667  HAD family hydrolase  32.73 
 
 
300 aa  79.3  0.00000000000004  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2525  hypothetical protein  38.41 
 
 
140 aa  79  0.00000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.636463 
 
 
-
 
NC_008726  Mvan_5423  HAD family hydrolase  31.43 
 
 
313 aa  79  0.00000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.988036 
 
 
-
 
NC_013093  Amir_6738  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.88 
 
 
294 aa  78.2  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1010  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.34 
 
 
352 aa  77  0.0000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.784708  n/a   
 
 
-
 
NC_009338  Mflv_0069  HAD family hydrolase  32.11 
 
 
295 aa  77.4  0.0000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0248353  normal 
 
 
-
 
NC_009921  Franean1_6135  HAD family hydrolase  31.67 
 
 
294 aa  77  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.415462 
 
 
-
 
NC_013159  Svir_02790  HAD-superfamily subfamily IB hydrolase, TIGR01490  33.33 
 
 
323 aa  76.3  0.0000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1925  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.96 
 
 
273 aa  76.6  0.0000000000003  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_0843  HAD family hydrolase  33.18 
 
 
301 aa  76.6  0.0000000000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.163877  normal  0.772835 
 
 
-
 
NC_013947  Snas_6363  HAD-superfamily subfamily IB hydrolase TIGR01490  32.59 
 
 
272 aa  76.3  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.499829  normal 
 
 
-
 
NC_014158  Tpau_0665  HAD-superfamily subfamily IB hydrolase, TIGR01490  30.28 
 
 
295 aa  75.9  0.0000000000005  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.406953  n/a   
 
 
-
 
NC_009565  TBFG_10516  phosphoserine phosphatase serB1  32.6 
 
 
373 aa  75.9  0.0000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0515  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.39 
 
 
289 aa  75.1  0.0000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.589704  n/a   
 
 
-
 
NC_009656  PSPA7_1870  hypothetical protein  31.13 
 
 
216 aa  75.1  0.0000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  0.531495  n/a   
 
 
-
 
NC_009656  PSPA7_0428  hypothetical protein  31.96 
 
 
217 aa  75.1  0.0000000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  0.469146  n/a   
 
 
-
 
NC_004578  PSPTO_3883  HAD-superfamily hydrolase  34.44 
 
 
193 aa  74.3  0.000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.91203  n/a   
 
 
-
 
NC_007005  Psyr_1601  HAD family hydrolase  31.75 
 
 
217 aa  74.3  0.000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0403422 
 
 
-
 
NC_007963  Csal_2578  HAD family hydrolase  37.59 
 
 
218 aa  74.7  0.000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_07130  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.72 
 
 
311 aa  73.9  0.000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.371793 
 
 
-
 
NC_009439  Pmen_4219  HAD family hydrolase  31.8 
 
 
217 aa  73.9  0.000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0318  HAD family hydrolase  28.91 
 
 
218 aa  74.3  0.000000000002  Pseudomonas putida W619  Bacteria  normal  normal  0.13474 
 
 
-
 
NC_013440  Hoch_3628  HAD-superfamily subfamily IB hydrolase, TIGR01490  29.95 
 
 
232 aa  74.3  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.856585  hitchhiker  0.00143877 
 
 
-
 
NC_008463  PA14_21900  HAD-superfamily hydrolase  39.68 
 
 
192 aa  73.9  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00000205565 
 
 
-
 
NC_008699  Noca_0490  HAD family hydrolase  32.44 
 
 
297 aa  73.6  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2722  HAD family hydrolase  39.23 
 
 
305 aa  73.2  0.000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0426  HAD family hydrolase  30.7 
 
 
231 aa  73.2  0.000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0139155 
 
 
-
 
NC_008463  PA14_49620  phosphoserine phosphatase  30.84 
 
 
217 aa  73.2  0.000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00503624  normal 
 
 
-
 
NC_008541  Arth_3299  HAD family hydrolase  29.65 
 
 
272 aa  73.2  0.000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0481  HAD family hydrolase  31.56 
 
 
295 aa  72.4  0.000000000006  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_04380  hypothetical protein  31.05 
 
 
217 aa  72  0.000000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4234  hypothetical protein  30.84 
 
 
217 aa  72  0.000000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1681  HAD family hydrolase  31.92 
 
 
217 aa  70.5  0.00000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.786603  normal 
 
 
-
 
NC_007912  Sde_0346  XRE family transcriptional regulator  27.06 
 
 
218 aa  70.9  0.00000000002  Saccharophagus degradans 2-40  Bacteria  normal  0.923957  normal  0.0904875 
 
 
-
 
NC_013124  Afer_1432  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.57 
 
 
770 aa  70.5  0.00000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.438652  n/a   
 
 
-
 
NC_002977  MCA2087  HAD family hydrolase  34.17 
 
 
220 aa  70.1  0.00000000003  Methylococcus capsulatus str. Bath  Bacteria  hitchhiker  0.00266008  n/a   
 
 
-
 
NC_008740  Maqu_0813  HAD family hydrolase  26.7 
 
 
228 aa  70.1  0.00000000003  Marinobacter aquaeolei VT8  Bacteria  decreased coverage  0.00498763  n/a   
 
 
-
 
NC_009512  Pput_5054  HAD family hydrolase  29.72 
 
 
218 aa  69.7  0.00000000003  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0418  HAD family hydrolase  43.24 
 
 
312 aa  69.7  0.00000000003  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00884178 
 
 
-
 
NC_010322  PputGB1_5200  HAD family hydrolase  37.07 
 
 
218 aa  69.7  0.00000000003  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2226  HAD-superfamily subfamily IB hydrolase, TIGR01490  36.29 
 
 
282 aa  69.3  0.00000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.98055 
 
 
-
 
NC_002947  PP_5147  HAD superfamily hydrolase  37.93 
 
 
218 aa  69.3  0.00000000005  Pseudomonas putida KT2440  Bacteria  normal  normal  0.416091 
 
 
-
 
NC_007947  Mfla_0520  HAD family hydrolase  33.61 
 
 
220 aa  68.9  0.00000000005  Methylobacillus flagellatus KT  Bacteria  normal  0.0927887  normal 
 
 
-
 
NC_009439  Pmen_1327  HAD family hydrolase  29.91 
 
 
217 aa  68.6  0.00000000008  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00757114  normal 
 
 
-
 
NC_013739  Cwoe_4644  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.57 
 
 
286 aa  68.6  0.00000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.460145 
 
 
-
 
NC_013203  Apar_0119  HAD-superfamily subfamily IB hydrolase, TIGR01490  31.36 
 
 
237 aa  67.8  0.0000000001  Atopobium parvulum DSM 20469  Bacteria  unclonable  0.00000000400181  normal  0.0929396 
 
 
-
 
NC_011886  Achl_3098  HAD-superfamily subfamily IB hydrolase, TIGR01490  28.7 
 
 
272 aa  67.8  0.0000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007484  Noc_2017  HAD family hydrolase  27.43 
 
 
242 aa  67  0.0000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5379  HAD family hydrolase  34.38 
 
 
218 aa  67.4  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.396939  normal  0.0228377 
 
 
-
 
NC_011901  Tgr7_2416  HAD-superfamily subfamily IB hydrolase, TIGR01490  34.45 
 
 
219 aa  67.4  0.0000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0614  HAD-superfamily subfamily IB hydrolase, TIGR01490  35.43 
 
 
255 aa  67  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.160629  normal  0.0475682 
 
 
-
 
NC_013889  TK90_0395  HAD-superfamily subfamily IB hydrolase, TIGR01490  28.31 
 
 
228 aa  66.6  0.0000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.771269  normal  0.534217 
 
 
-
 
NC_013530  Xcel_0438  HAD-superfamily subfamily IB hydrolase, TIGR01490  32.09 
 
 
268 aa  66.2  0.0000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2112  HAD family hydrolase  32.08 
 
 
750 aa  65.9  0.0000000005  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2544  HAD-superfamily subfamily IB hydrolase, TIGR01490  24.54 
 
 
241 aa  65.9  0.0000000005  Anaeromyxobacter sp. K  Bacteria  decreased coverage  0.00145664  n/a   
 
 
-
 
NC_013440  Hoch_6034  HAD-superfamily subfamily IB hydrolase, TIGR01490  26.76 
 
 
222 aa  65.5  0.0000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_2640  HAD-superfamily subfamily IB hydrolase, TIGR01490  24.54 
 
 
241 aa  65.5  0.0000000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.228843  n/a   
 
 
-
 
NC_010524  Lcho_0674  HAD family hydrolase  28.88 
 
 
227 aa  65.1  0.0000000009  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_002950  PG0508  HAD family hydrolase  30.26 
 
 
200 aa  64.7  0.000000001  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.210077 
 
 
-
 
NC_010322  PputGB1_1313  HAD family hydrolase  30.09 
 
 
217 aa  64.7  0.000000001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.448818 
 
 
-
 
NC_008789  Hhal_0886  HAD family hydrolase  36.97 
 
 
227 aa  64.3  0.000000001  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3749  HAD family hydrolase  31.9 
 
 
218 aa  64.7  0.000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.045267 
 
 
-
 
NC_010501  PputW619_1270  HAD family hydrolase  30.09 
 
 
217 aa  64.7  0.000000001  Pseudomonas putida W619  Bacteria  normal  normal  0.0449796 
 
 
-
 
NC_009512  Pput_3998  HAD family hydrolase  30.56 
 
 
217 aa  64.7  0.000000001  Pseudomonas putida F1  Bacteria  normal  0.050869  normal  0.239622 
 
 
-
 
NC_009338  Mflv_3285  HAD family hydrolase  31.87 
 
 
249 aa  63.5  0.000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.651915 
 
 
-
 
NC_007760  Adeh_1316  HAD family hydrolase  24.54 
 
 
241 aa  63.9  0.000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.021557  n/a   
 
 
-
 
NC_009380  Strop_0348  HAD family hydrolase  43.24 
 
 
290 aa  63.9  0.000000002  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
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