More than 300 homologs were found in PanDaTox collection
for query gene Avi_5762 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_5762  ABC transporter membrane spanning protein (sugar)  100 
 
 
314 aa  621  1e-177  Agrobacterium vitis S4  Bacteria  normal  0.198648  n/a   
 
 
-
 
NC_012848  Rleg_5081  binding-protein-dependent transport systems inner membrane component  87.58 
 
 
331 aa  537  1e-151  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.120867  normal  0.192026 
 
 
-
 
NC_011368  Rleg2_5361  binding-protein-dependent transport systems inner membrane component  86.31 
 
 
329 aa  504  9.999999999999999e-143  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.171463  normal  0.517173 
 
 
-
 
NC_012917  PC1_3522  binding-protein-dependent transport systems inner membrane component  66.45 
 
 
331 aa  424  1e-117  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3671  binding-protein-dependent transport systems inner membrane component  66.45 
 
 
332 aa  423  1e-117  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0663  binding-protein-dependent transport systems inner membrane component  64.84 
 
 
333 aa  405  1.0000000000000001e-112  Dickeya zeae Ech1591  Bacteria  normal  0.440104  n/a   
 
 
-
 
NC_012880  Dd703_0715  binding-protein-dependent transport systems inner membrane component  63.87 
 
 
333 aa  404  1e-111  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1886  binding-protein-dependent transport systems inner membrane component  56.05 
 
 
345 aa  328  5.0000000000000004e-89  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.457033 
 
 
-
 
NC_011369  Rleg2_1700  binding-protein-dependent transport systems inner membrane component  56.05 
 
 
345 aa  328  8e-89  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.163981  normal 
 
 
-
 
NC_007802  Jann_3943  binding-protein-dependent transport systems inner membrane component  42.45 
 
 
353 aa  207  3e-52  Jannaschia sp. CCS1  Bacteria  normal  normal  0.587147 
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
316 aa  163  4.0000000000000004e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  34.73 
 
 
297 aa  162  8.000000000000001e-39  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
306 aa  160  3e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
309 aa  160  3e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  37.74 
 
 
294 aa  157  2e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_008010  Dgeo_2725  binding-protein-dependent transport systems inner membrane component  36.54 
 
 
315 aa  157  2e-37  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.104995  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
292 aa  156  4e-37  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_013517  Sterm_4036  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
291 aa  155  6e-37  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  36.96 
 
 
287 aa  155  8e-37  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  39.58 
 
 
288 aa  155  1e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  37.93 
 
 
300 aa  154  2e-36  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
299 aa  154  2e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  35.22 
 
 
325 aa  154  2.9999999999999998e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
294 aa  153  2.9999999999999998e-36  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  36.64 
 
 
294 aa  153  2.9999999999999998e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
295 aa  153  4e-36  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0068  binding-protein-dependent transport systems inner membrane component  34.58 
 
 
315 aa  152  1e-35  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  34.82 
 
 
306 aa  150  2e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  32.77 
 
 
321 aa  150  2e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2714  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
293 aa  150  4e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.548655  normal 
 
 
-
 
NC_009667  Oant_0353  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
317 aa  150  4e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0740262  n/a   
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  36.47 
 
 
290 aa  147  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  33.99 
 
 
310 aa  147  2.0000000000000003e-34  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
309 aa  147  2.0000000000000003e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
309 aa  147  2.0000000000000003e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  34.17 
 
 
310 aa  147  3e-34  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
303 aa  146  5e-34  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  33.68 
 
 
293 aa  145  8.000000000000001e-34  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  30.1 
 
 
315 aa  145  9e-34  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  33.86 
 
 
310 aa  145  1e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  33.86 
 
 
310 aa  145  1e-33  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
309 aa  145  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  34.17 
 
 
310 aa  144  2e-33  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
296 aa  144  2e-33  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  34.17 
 
 
310 aa  144  2e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
283 aa  144  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1377  binding-protein-dependent transport systems inner membrane component  40.43 
 
 
453 aa  144  2e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  33.86 
 
 
310 aa  144  2e-33  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  33.54 
 
 
310 aa  144  2e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  33.86 
 
 
310 aa  144  3e-33  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
317 aa  143  3e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_07470  carbohydrate ABC transporter membrane protein  36.33 
 
 
304 aa  143  4e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  33.11 
 
 
318 aa  142  7e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
328 aa  142  7e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  33.54 
 
 
310 aa  142  8e-33  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  34.45 
 
 
310 aa  142  9.999999999999999e-33  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  34.87 
 
 
299 aa  142  9.999999999999999e-33  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_008541  Arth_3142  binding-protein-dependent transport systems inner membrane component  34.73 
 
 
325 aa  142  9.999999999999999e-33  Arthrobacter sp. FB24  Bacteria  normal  0.406302  n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
307 aa  141  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_007493  RSP_1443  ABC sugar transporter, inner membrane subunit  36.36 
 
 
303 aa  141  1.9999999999999998e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0903613  n/a   
 
 
-
 
NC_009049  Rsph17029_0092  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
296 aa  141  1.9999999999999998e-32  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  31.79 
 
 
307 aa  141  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  31.67 
 
 
334 aa  141  1.9999999999999998e-32  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_013172  Bfae_29440  permease component of ABC-type sugar transporter  32.57 
 
 
318 aa  141  1.9999999999999998e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  31.21 
 
 
324 aa  139  3.9999999999999997e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
299 aa  140  3.9999999999999997e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
318 aa  140  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  31 
 
 
320 aa  139  4.999999999999999e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
303 aa  139  4.999999999999999e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
317 aa  139  6e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
300 aa  139  7e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
338 aa  138  1e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
308 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
320 aa  138  2e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  34.71 
 
 
318 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
321 aa  137  2e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0146  binding-protein-dependent transport systems inner membrane component  35.89 
 
 
292 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0896196  normal 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  28.76 
 
 
293 aa  137  2e-31  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
311 aa  138  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
300 aa  137  3.0000000000000003e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  30.33 
 
 
325 aa  137  3.0000000000000003e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
318 aa  137  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
298 aa  137  3.0000000000000003e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
300 aa  137  3.0000000000000003e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  30.77 
 
 
325 aa  136  4e-31  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_007802  Jann_2587  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
314 aa  136  4e-31  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.000137508  normal 
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  36.76 
 
 
420 aa  136  4e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  33.97 
 
 
313 aa  136  5e-31  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
320 aa  136  5e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
420 aa  135  7.000000000000001e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  32.88 
 
 
301 aa  135  8e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  32.57 
 
 
308 aa  135  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  32.27 
 
 
320 aa  134  9.999999999999999e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0753  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
312 aa  135  9.999999999999999e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.308461  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  32.89 
 
 
317 aa  134  9.999999999999999e-31  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
328 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  36.67 
 
 
306 aa  134  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_29020  carbohydrate ABC transporter membrane protein  32.3 
 
 
275 aa  134  1.9999999999999998e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  32.76 
 
 
308 aa  134  1.9999999999999998e-30  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
293 aa  134  3e-30  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
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