More than 300 homologs were found in PanDaTox collection
for query gene AFE_1295 on replicon NC_011761
Organism: Acidithiobacillus ferrooxidans ATCC 23270



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011761  AFE_1295  DNA-binding response regulator  100 
 
 
212 aa  438  9.999999999999999e-123  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0848  two component, sigma54 specific, transcriptional regulator, Fis family  87.97 
 
 
482 aa  280  9e-75  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.23473  normal  0.837957 
 
 
-
 
NC_011761  AFE_0700  hydrogenase sigma-54 dependent DNA-binding response regulator  87.97 
 
 
482 aa  280  9e-75  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008036  Sala_3195  two component, sigma54 specific, Fis family transcriptional regulator  66.67 
 
 
482 aa  74.3  0.000000000001  Sphingopyxis alaskensis RB2256  Bacteria  n/a    n/a   
 
 
-
 
NC_010581  Bind_1161  two component, sigma54 specific, Fis family transcriptional regulator  26.19 
 
 
496 aa  68.9  0.00000000005  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.175427  normal 
 
 
-
 
NC_011666  Msil_3766  two component, sigma54 specific, transcriptional regulator, Fis family  67.92 
 
 
481 aa  68.2  0.00000000008  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_0458  two-component response regulator protein  65.38 
 
 
483 aa  66.2  0.0000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.9933  normal  0.101135 
 
 
-
 
NC_009049  Rsph17029_2158  two component, sigma54 specific, Fis family transcriptional regulator  28.8 
 
 
491 aa  65.9  0.0000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00791251  normal  0.142838 
 
 
-
 
NC_007493  RSP_0507  HupR response regulator  28.8 
 
 
491 aa  65.9  0.0000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3757  two component, sigma54 specific, Fis family transcriptional regulator  28.12 
 
 
499 aa  62.4  0.000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3109  two component, sigma54 specific, Fis family transcriptional regulator  25.6 
 
 
493 aa  61.6  0.000000009  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3962  two component, sigma54 specific, Fis family transcriptional regulator  25 
 
 
495 aa  60.8  0.00000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1542  response regulator receiver domain-containing protein  25.78 
 
 
309 aa  60.8  0.00000001  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000150385  normal  0.319028 
 
 
-
 
NC_009656  PSPA7_2645  response regulator  32.63 
 
 
447 aa  60.5  0.00000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0366662  n/a   
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  30.51 
 
 
303 aa  60.5  0.00000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.35 
 
 
1355 aa  59.7  0.00000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  24.6 
 
 
484 aa  59.7  0.00000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_30830  putative two-component response regulator  31.58 
 
 
447 aa  59.3  0.00000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0592396  hitchhiker  0.000000000000489784 
 
 
-
 
NC_007958  RPD_1179  sigma-54 factor, interaction region  27.42 
 
 
482 aa  58.2  0.00000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0557788  normal 
 
 
-
 
NC_002939  GSU2581  sigma-54 dependent transcriptional regulator  33.33 
 
 
456 aa  58.2  0.0000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  34.51 
 
 
602 aa  57.8  0.0000001  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  27.88 
 
 
449 aa  58.2  0.0000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_009429  Rsph17025_3364  hydrogenase accessory protein HypB  24.8 
 
 
492 aa  56.6  0.0000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.224656 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  28.77 
 
 
473 aa  56.6  0.0000003  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_009675  Anae109_1854  histidine kinase  25.14 
 
 
1111 aa  56.6  0.0000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.131557  normal 
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  36.76 
 
 
466 aa  56.6  0.0000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_013132  Cpin_0987  two component, sigma54 specific, transcriptional regulator, Fis family  31.97 
 
 
489 aa  56.6  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4102  two component, sigma54 specific, Fis family transcriptional regulator  25 
 
 
475 aa  56.6  0.0000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0879  two component, sigma54 specific, transcriptional regulator, Fis family  36.76 
 
 
466 aa  56.6  0.0000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1171  two component, sigma54 specific, transcriptional regulator, Fis family  29.25 
 
 
482 aa  55.8  0.0000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2808  two component, sigma54 specific, Fis family transcriptional regulator  24.03 
 
 
482 aa  56.2  0.0000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2184  two component, sigma54 specific, Fis family transcriptional regulator  23.2 
 
 
497 aa  55.8  0.0000004  Xanthobacter autotrophicus Py2  Bacteria  normal  0.682977  normal  0.229753 
 
 
-
 
NC_009656  PSPA7_2273  putative two-component response regulator  29.66 
 
 
304 aa  56.2  0.0000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.438912  n/a   
 
 
-
 
NC_009075  BURPS668_A2314  response regulator  31.37 
 
 
475 aa  55.5  0.0000005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2231  response regulator  31.37 
 
 
475 aa  55.5  0.0000006  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0606  response regulator  27.05 
 
 
447 aa  55.5  0.0000006  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1662  response regulator  31.37 
 
 
475 aa  55.5  0.0000006  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0711  response regulator  31.37 
 
 
518 aa  55.5  0.0000006  Burkholderia pseudomallei 1710b  Bacteria  normal  0.226782  n/a   
 
 
-
 
NC_009079  BMA10247_A0599  response regulator  31.37 
 
 
475 aa  55.5  0.0000006  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1923  response regulator  31.37 
 
 
475 aa  55.5  0.0000006  Burkholderia mallei NCTC 10229  Bacteria  normal  0.537818  n/a   
 
 
-
 
NC_008784  BMASAVP1_1716  response regulator  31.37 
 
 
475 aa  55.5  0.0000006  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2012  two component, sigma54 specific, Fis family transcriptional regulator  46.55 
 
 
485 aa  55.1  0.0000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0597  response regulator receiver modulated metal dependent phosphohydrolase  26.4 
 
 
334 aa  55.1  0.0000009  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2496  two component, sigma54 specific, Fis family transcriptional regulator  54.9 
 
 
495 aa  54.7  0.0000009  Magnetococcus sp. MC-1  Bacteria  normal  0.0534594  normal  0.148721 
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  30 
 
 
460 aa  54.3  0.000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  30.69 
 
 
481 aa  54.3  0.000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  30.69 
 
 
481 aa  54.3  0.000001  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2469  response regulator  30.69 
 
 
481 aa  54.3  0.000001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  30.69 
 
 
481 aa  54.3  0.000001  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  30.69 
 
 
481 aa  54.3  0.000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0372  sigma-54 dependent DNA-binding response regulator  30.77 
 
 
461 aa  53.9  0.000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2942  response regulator  28.57 
 
 
456 aa  53.9  0.000002  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_006348  BMA0261  response regulator  30.69 
 
 
439 aa  53.9  0.000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  30.69 
 
 
481 aa  53.5  0.000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11045  transcriptional regulatory protein kdpE  31.52 
 
 
226 aa  53.5  0.000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1956  two component, sigma54 specific, Fis family transcriptional regulator  23.26 
 
 
486 aa  53.5  0.000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.696783  normal 
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  28.36 
 
 
438 aa  53.1  0.000003  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0731  response regulator  31.53 
 
 
476 aa  53.1  0.000003  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0883  two component, sigma54 specific, transcriptional regulator, Fis family  35.29 
 
 
466 aa  53.1  0.000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.879866  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  33.98 
 
 
463 aa  53.1  0.000003  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_008726  Mvan_4763  two component transcriptional regulator  30.46 
 
 
230 aa  53.1  0.000003  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.96205  normal 
 
 
-
 
NC_002936  DET0624  response regulator  26.4 
 
 
334 aa  52.8  0.000004  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.43 
 
 
994 aa  52.8  0.000004  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_013223  Dret_0168  PAS modulated sigma54 specific transcriptional regulator, Fis family  33.7 
 
 
462 aa  52.4  0.000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.59199 
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  27.21 
 
 
456 aa  52.4  0.000004  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  28.78 
 
 
453 aa  52.4  0.000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_007204  Psyc_0720  response regulator receiver, fis type  24.78 
 
 
312 aa  52.4  0.000005  Psychrobacter arcticus 273-4  Bacteria  normal  0.935409  normal 
 
 
-
 
NC_009708  YpsIP31758_2820  transcriptional regulatory protein ZraR  31.07 
 
 
454 aa  52.4  0.000005  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  28.16 
 
 
965 aa  52.4  0.000005  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_010465  YPK_2907  two component, sigma54 specific, Fis family transcriptional regulator  31.07 
 
 
454 aa  52.4  0.000005  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  29.93 
 
 
465 aa  52  0.000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4608  two component transcriptional regulator  38.1 
 
 
226 aa  52  0.000007  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4296  two component transcriptional regulator  38.1 
 
 
226 aa  52  0.000007  Mycobacterium sp. KMS  Bacteria  normal  0.0135013  normal  0.794825 
 
 
-
 
NC_008146  Mmcs_4230  two component transcriptional regulator  38.1 
 
 
226 aa  52  0.000007  Mycobacterium sp. MCS  Bacteria  normal  0.285059  n/a   
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  26.13 
 
 
451 aa  51.6  0.000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_008346  Swol_0792  hypothetical protein  33.7 
 
 
662 aa  51.6  0.000008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  29.79 
 
 
469 aa  51.6  0.000009  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  24.76 
 
 
823 aa  51.6  0.000009  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1832  two component, sigma54 specific, transcriptional regulator, Fis family  33.06 
 
 
453 aa  51.6  0.000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.475571  n/a   
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  29.79 
 
 
469 aa  51.6  0.000009  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1657  two component, sigma54 specific, transcriptional regulator, Fis family  32.61 
 
 
456 aa  50.8  0.00001  Geobacter lovleyi SZ  Bacteria  normal  0.0365007  n/a   
 
 
-
 
NC_013552  DhcVS_565  response regulator receiver:metal-dependent phosphohydrolase, HD subdomain protein  25.24 
 
 
334 aa  50.8  0.00001  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  30.08 
 
 
473 aa  50.8  0.00001  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_013037  Dfer_2388  response regulator receiver protein  27.52 
 
 
154 aa  51.2  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.319662 
 
 
-
 
NC_007651  BTH_I0615  response regulator  27.78 
 
 
484 aa  51.2  0.00001  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_011145  AnaeK_0673  two component, sigma54 specific, transcriptional regulator, Fis family  29.37 
 
 
457 aa  51.2  0.00001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0673  two component, sigma54 specific, transcriptional regulator, Fis family  29.37 
 
 
458 aa  51.2  0.00001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  38.81 
 
 
456 aa  50.4  0.00002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  26.61 
 
 
270 aa  50.4  0.00002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  28.15 
 
 
513 aa  50.8  0.00002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_013061  Phep_4238  sigma-54 factor interaction domain-containing protein  26.97 
 
 
467 aa  50.4  0.00002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0889  two component, sigma54 specific, Fis family transcriptional regulator  45.83 
 
 
457 aa  50.8  0.00002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.562969  normal 
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  23.01 
 
 
311 aa  50.4  0.00002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  31.16 
 
 
459 aa  50.8  0.00002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2258  two component, sigma54 specific, Fis family transcriptional regulator  32.26 
 
 
468 aa  50.1  0.00002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.428008  normal  0.0222917 
 
 
-
 
NC_004347  SO_2541  response regulator  30.77 
 
 
441 aa  49.7  0.00003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_1826  two component, sigma54 specific, transcriptional regulator, Fis family  31.73 
 
 
455 aa  49.7  0.00003  Geobacter lovleyi SZ  Bacteria  normal  0.048867  n/a   
 
 
-
 
NC_007517  Gmet_1919  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  26.87 
 
 
350 aa  50.1  0.00003  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.179225 
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  25.6 
 
 
515 aa  49.7  0.00003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  30.19 
 
 
331 aa  49.7  0.00003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
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