Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0168 |
Symbol | |
ID | 8417972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 211703 |
End bp | 213091 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 645036733 |
Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_003197048 |
Protein GI | 258404306 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.59199 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATTGC CGTTGCCCCA GTCACATCCG TTTTTCGAGG ATGTGGTGAA CACCATGCAG GAAGGATTGT TGATCGTGGC CCCGGACGGA ACCATCCAGA TGGTCAACGA GGCTTTAACG CATATCCTTG GCTATGAACG CGAAGAATTG CTCGGTCGTT CCTGTGCGGT CTTGCAGTGC GATCAATGCC AGGCGGCCCG CGGCCAGGGG GGCGCGCACT GGTGCCGTCT GTTTGCCCAG GGTCTGGAGC GCAAACGGAG GTGTACGGTC CGCCGGAAGG ACGGCCACCT GGTACCGGTT CTGAAGAGTG CTTCGTTGCT CAGGCACAAC CAGGAGGTTG TTGGGGCGGT GGAGACCGTG ACCGATATTT CCCTTCTCGA CCGCCACGAG ACGGCCATCA AAGACCTTGA GCGGGCCTTG GACCGGGAAT TTTGCGGTAT GGTCGGCACG GCTCCGGCCA TGCGTCACCT GTTTTCCTTG CTGGAAAAAG TGGCCCAAAG CGAAGCGCCG GTGATGGTGC GCGGCGAATC CGGAACCGGC AAGGAACTGG CGGCCCGGGC CGTGCACGAG TGCAGTCCGC GGCGCGAGGG ACCGTTCATC CAACTCAATT GCGCCGCTCT CAATGAAGCT CTTTTGGAAA GCGAGCTTTT CGGACACGTC AAGGGCGCCT TTACCGGGGC CTATAGGGCT CGGCCGGGTC GGTTTGAAGT GGCGACGGGC GGGACGCTTT TTCTGGATGA AGTGGGGGAT ATTCCGCTCT CGGTCCAGGC CAAGCTGCTC CGGGTGCTGG AGACCAAGCA GATTGAACGG GTCGGTGACC ACCGGCCCAT TGAAGTGGAT GTGCGGATCG TTTCGGCCAC AAACCGTGAT CTGGACCGTC TTGTTGCTGA GGGCGAGTTC AGGGAGGATC TGTATTACCG GATCAACGCC CTGCCGGTGG CCATGCCAGC CTTGCGGGAG CGTCCAGAGG ATATCCCCTG GCTGGCTAGC CATTTCCTTG GTCTGGTCCG GCAAAATAGC GGCAAGGCGC TTACCGGACT GACCCCGGAG GCTCTGCGCT CTGTGGTCGC TTACCCTTGG CCGGGCAATG TCCGAGAGCT CAAAAGCGCT CTGGAGTACG CCAGTGTTCT GGCCGAAACT GGCCGTTTAA AGACGGAACA CCTCCCGCCT CATATTACGG CAGCAAACCC ATCAGCACAG CCGGCTGCAA GCCATTCCGG GGAAGAAACG GCTGATGCGC AGCGCCAGGC GTTGATAGAG GCCTTGCGGC AAAGCGGTGG CAACCAGAGC CGGGCTGCGC AATTGTTGGG GGTCTCCCGG GTGACCGTTT ATAACCGGAT GCGCAAATAC GGTCTCACGG TGCAGACAGT GGTCGAAAGC CGGCACTGA
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Protein sequence | MTLPLPQSHP FFEDVVNTMQ EGLLIVAPDG TIQMVNEALT HILGYEREEL LGRSCAVLQC DQCQAARGQG GAHWCRLFAQ GLERKRRCTV RRKDGHLVPV LKSASLLRHN QEVVGAVETV TDISLLDRHE TAIKDLERAL DREFCGMVGT APAMRHLFSL LEKVAQSEAP VMVRGESGTG KELAARAVHE CSPRREGPFI QLNCAALNEA LLESELFGHV KGAFTGAYRA RPGRFEVATG GTLFLDEVGD IPLSVQAKLL RVLETKQIER VGDHRPIEVD VRIVSATNRD LDRLVAEGEF REDLYYRINA LPVAMPALRE RPEDIPWLAS HFLGLVRQNS GKALTGLTPE ALRSVVAYPW PGNVRELKSA LEYASVLAET GRLKTEHLPP HITAANPSAQ PAASHSGEET ADAQRQALIE ALRQSGGNQS RAAQLLGVSR VTVYNRMRKY GLTVQTVVES RH
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