142 homologs were found in PanDaTox collection
for query gene Vapar_3628 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  100 
 
 
203 aa  403  1e-111  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  32.04 
 
 
196 aa  90.1  2e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  28.8 
 
 
194 aa  90.1  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  26.63 
 
 
191 aa  83.6  0.000000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  34.97 
 
 
190 aa  80.5  0.00000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  31.41 
 
 
202 aa  80.1  0.00000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_008740  Maqu_3133  hypothetical protein  28.87 
 
 
237 aa  80.5  0.00000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  22.83 
 
 
191 aa  80.1  0.00000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  33.52 
 
 
196 aa  80.1  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  28.33 
 
 
194 aa  79.7  0.00000000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  31.82 
 
 
189 aa  79.7  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  29.45 
 
 
201 aa  79  0.00000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  28.32 
 
 
189 aa  78.6  0.00000000000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  29.19 
 
 
189 aa  78.2  0.00000000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  29.05 
 
 
185 aa  77.4  0.0000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  32 
 
 
198 aa  76.6  0.0000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  28.95 
 
 
175 aa  76.6  0.0000000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  25 
 
 
189 aa  76.6  0.0000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  30.22 
 
 
208 aa  76.6  0.0000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  25.58 
 
 
193 aa  75.5  0.0000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  30.22 
 
 
197 aa  75.5  0.0000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  28 
 
 
196 aa  74.7  0.0000000000009  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  26.01 
 
 
201 aa  74.3  0.000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  30.87 
 
 
198 aa  73.2  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  30.46 
 
 
197 aa  73.9  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  26.49 
 
 
187 aa  73.2  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  25.99 
 
 
196 aa  73.6  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  28.4 
 
 
200 aa  73.2  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_008048  Sala_3164  cyclic nucleotide-binding protein  30.98 
 
 
199 aa  72  0.000000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  27.92 
 
 
194 aa  72.4  0.000000000005  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  27.81 
 
 
198 aa  72  0.000000000006  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  26.63 
 
 
190 aa  71.6  0.000000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  30.52 
 
 
192 aa  71.2  0.000000000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_013037  Dfer_1119  putative transcriptional regulator, Crp/Fnr family  27.17 
 
 
200 aa  71.2  0.000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.301792  normal  0.283785 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  25 
 
 
189 aa  70.9  0.00000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  27.12 
 
 
195 aa  70.9  0.00000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  23.08 
 
 
189 aa  70.5  0.00000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  29.89 
 
 
189 aa  70.1  0.00000000002  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  29.31 
 
 
194 aa  70.5  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  21.79 
 
 
194 aa  70.1  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3393  CRP/FNR family transcriptional regulator  32.3 
 
 
192 aa  69.3  0.00000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  27.85 
 
 
187 aa  69.3  0.00000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  26.97 
 
 
208 aa  69.3  0.00000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2688  cyclic nucleotide-binding protein  31.18 
 
 
202 aa  68.9  0.00000000004  Shewanella sp. MR-4  Bacteria  normal  0.497701  normal  0.0838623 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  27.52 
 
 
192 aa  69.3  0.00000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  26.74 
 
 
193 aa  68.9  0.00000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  25.49 
 
 
194 aa  69.3  0.00000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_013061  Phep_3758  cyclic nucleotide-binding  27.95 
 
 
199 aa  69.3  0.00000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0532  cyclic nucleotide-binding protein  28.78 
 
 
189 aa  68.9  0.00000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  25.14 
 
 
194 aa  68.9  0.00000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  31.13 
 
 
191 aa  68.9  0.00000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_004347  SO_1586  hypothetical protein  31.76 
 
 
200 aa  68.2  0.00000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013730  Slin_2881  putative transcriptional regulator, Crp/Fnr family  26.59 
 
 
187 aa  68.2  0.00000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  29.55 
 
 
205 aa  68.2  0.00000000008  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  29.22 
 
 
186 aa  67.8  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2856  cyclic nucleotide-binding protein  30.59 
 
 
202 aa  66.6  0.0000000002  Shewanella sp. ANA-3  Bacteria  normal  normal  0.5589 
 
 
-
 
NC_009092  Shew_2699  cyclic nucleotide-binding protein  31.79 
 
 
192 aa  67  0.0000000002  Shewanella loihica PV-4  Bacteria  normal  0.378618  normal  0.0569969 
 
 
-
 
NC_013162  Coch_0935  cyclic nucleotide-binding protein  27.5 
 
 
166 aa  67  0.0000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0225021  n/a   
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  25.97 
 
 
188 aa  66.6  0.0000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  24.57 
 
 
192 aa  66.6  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  30.56 
 
 
196 aa  67  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  27.93 
 
 
187 aa  67  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_003910  CPS_2731  cyclic nucleotide-binding domain-containing protein  26.85 
 
 
192 aa  66.2  0.0000000003  Colwellia psychrerythraea 34H  Bacteria  normal  0.19887  n/a   
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  26.01 
 
 
192 aa  66.2  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  26.92 
 
 
191 aa  66.2  0.0000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  25.9 
 
 
168 aa  66.6  0.0000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  25.93 
 
 
190 aa  66.2  0.0000000003  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  27.66 
 
 
227 aa  66.2  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  27.03 
 
 
192 aa  65.9  0.0000000004  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  28.99 
 
 
208 aa  65.9  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  27.63 
 
 
208 aa  65.5  0.0000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  28.26 
 
 
189 aa  65.5  0.0000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_008322  Shewmr7_2756  cyclic nucleotide-binding protein  30.59 
 
 
202 aa  65.1  0.0000000008  Shewanella sp. MR-7  Bacteria  normal  0.57693  normal 
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  26.75 
 
 
197 aa  64.7  0.0000000008  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  24.4 
 
 
192 aa  64.7  0.0000000009  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  27.53 
 
 
189 aa  64.3  0.000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  24.73 
 
 
196 aa  63.5  0.000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_013132  Cpin_4260  putative transcriptional regulator, Crp/Fnr family  27.91 
 
 
192 aa  63.5  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.635964  normal  0.714837 
 
 
-
 
NC_009665  Shew185_1388  cyclic nucleotide-binding protein  30 
 
 
203 aa  63.9  0.000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  24.02 
 
 
189 aa  63.2  0.000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  28.19 
 
 
194 aa  62  0.000000005  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  24.83 
 
 
197 aa  62  0.000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  24.53 
 
 
195 aa  60.8  0.00000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_009831  Ssed_3250  cyclic nucleotide-binding protein  30.06 
 
 
190 aa  61.2  0.00000001  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.007094  normal 
 
 
-
 
NC_013061  Phep_1779  cyclic nucleotide-binding  25.99 
 
 
192 aa  60.8  0.00000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.705859  normal  0.0224927 
 
 
-
 
NC_013061  Phep_2769  cyclic nucleotide-binding  27.44 
 
 
192 aa  61.2  0.00000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.311339  normal 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  21.23 
 
 
188 aa  60.1  0.00000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  26.06 
 
 
192 aa  60.5  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  24.65 
 
 
195 aa  59.7  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  26 
 
 
185 aa  59.3  0.00000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  23.12 
 
 
175 aa  58.9  0.00000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  22.89 
 
 
190 aa  58.9  0.00000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  25.81 
 
 
191 aa  58.5  0.00000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  24.23 
 
 
204 aa  58.2  0.00000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_013132  Cpin_5401  putative transcriptional regulator, Crp/Fnr family  24.57 
 
 
202 aa  58.2  0.00000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0660181 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  30.36 
 
 
189 aa  58.2  0.00000009  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  23.08 
 
 
188 aa  57.8  0.0000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  23.78 
 
 
190 aa  57.4  0.0000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0410  putative DNA-binding protein  18.54 
 
 
190 aa  57.8  0.0000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.269856  n/a   
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  26.97 
 
 
184 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
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