140 homologs were found in PanDaTox collection
for query gene Shewmr7_2751 on replicon NC_008322
Organism: Shewanella sp. MR-7



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008321  Shewmr4_2683  putative phosphoglycerate transport regulatory protein PgtC  98.63 
 
 
437 aa  891    Shewanella sp. MR-4  Bacteria  normal  0.322745  normal  0.30829 
 
 
-
 
NC_008322  Shewmr7_2751  putative phosphoglycerate transport regulatory protein PgtC  100 
 
 
437 aa  903    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3241  phosphoglycerate transport regulatory protein PgtC, putative  43.11 
 
 
419 aa  342  5.999999999999999e-93  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.560629 
 
 
-
 
NC_009456  VC0395_0644  putative phosphoglycerate transport regulatory protein PgtC  32.39 
 
 
440 aa  237  4e-61  Vibrio cholerae O395  Bacteria  normal  0.788627  n/a   
 
 
-
 
NC_011083  SeHA_C2651  phosphoglycerate transport: protein for signal transmission  30.42 
 
 
407 aa  190  4e-47  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0959912  hitchhiker  0.000467532 
 
 
-
 
NC_011149  SeAg_B2539  phosphoglycerate transport: protein for signal transmission  30.57 
 
 
436 aa  189  8e-47  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2628  phosphoglycerate transport: protein for signal transmission  30.31 
 
 
436 aa  189  9e-47  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2587  phosphoglycerate transport: protein for signal transmission  30.57 
 
 
436 aa  189  1e-46  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.259528  normal 
 
 
-
 
NC_008688  Pden_4658  extracellular solute-binding protein  30.81 
 
 
440 aa  182  8.000000000000001e-45  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4801  extracellular solute-binding protein  28.88 
 
 
442 aa  169  9e-41  Delftia acidovorans SPH-1  Bacteria  normal  0.433474  normal 
 
 
-
 
NC_010581  Bind_2968  extracellular solute-binding protein  25.47 
 
 
445 aa  125  1e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.812096 
 
 
-
 
NC_008688  Pden_4655  putative regulatory lipoprotein  27.74 
 
 
395 aa  119  7e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1990  putative regulatory lipoprotein  25.44 
 
 
419 aa  117  6e-25  Methylobacillus flagellatus KT  Bacteria  normal  0.307134  normal 
 
 
-
 
NC_012560  Avin_52130  periplasmic binding protein  24.66 
 
 
388 aa  111  2.0000000000000002e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_0333  extracellular solute-binding protein  26.8 
 
 
344 aa  90.9  4e-17  Methanococcus aeolicus Nankai-3  Archaea  normal  0.853179  n/a   
 
 
-
 
NC_009637  MmarC7_1107  extracellular solute-binding protein  25.86 
 
 
343 aa  90.1  7e-17  Methanococcus maripaludis C7  Archaea  normal  0.695758  normal 
 
 
-
 
NC_009135  MmarC5_1570  extracellular solute-binding protein  25.77 
 
 
350 aa  89.7  1e-16  Methanococcus maripaludis C5  Archaea  normal  0.840173  n/a   
 
 
-
 
NC_008698  Tpen_1485  extracellular solute-binding protein  29.23 
 
 
470 aa  81.6  0.00000000000003  Thermofilum pendens Hrk 5  Archaea  normal  0.0472403  n/a   
 
 
-
 
NC_012857  Rpic12D_4607  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  25.7 
 
 
341 aa  80.1  0.00000000000008  Ralstonia pickettii 12D  Bacteria  normal  0.980284  normal 
 
 
-
 
NC_010678  Rpic_4473  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  25.7 
 
 
341 aa  80.1  0.00000000000008  Ralstonia pickettii 12J  Bacteria  normal  normal  0.144148 
 
 
-
 
NC_013171  Apre_0051  extracellular solute-binding protein family 1  28.3 
 
 
378 aa  78.6  0.0000000000002  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.115612  n/a   
 
 
-
 
NC_008554  Sfum_3495  extracellular solute-binding protein  26.36 
 
 
375 aa  79  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0500866  normal  0.246878 
 
 
-
 
NC_009376  Pars_1168  extracellular solute-binding protein  21.89 
 
 
516 aa  77.4  0.0000000000004  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  0.731614  normal  0.0353149 
 
 
-
 
NC_009636  Smed_3281  extracellular solute-binding protein  24.81 
 
 
343 aa  75.9  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1545  extracellular solute-binding protein family 1  25.89 
 
 
339 aa  75.1  0.000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.061269  n/a   
 
 
-
 
NC_010525  Tneu_1007  extracellular solute-binding protein  20.81 
 
 
485 aa  75.5  0.000000000002  Thermoproteus neutrophilus V24Sta  Archaea  normal  0.256846  decreased coverage  0.000168852 
 
 
-
 
NC_013515  Smon_0283  extracellular solute-binding protein family 1  27.54 
 
 
342 aa  74.7  0.000000000003  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_1586  extracellular solute-binding protein family 1  23.34 
 
 
333 aa  73.9  0.000000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010508  Bcenmc03_3159  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  26.97 
 
 
351 aa  73.2  0.000000000009  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.451295  normal  0.0280644 
 
 
-
 
NC_014212  Mesil_1991  extracellular solute-binding protein family 1  24.75 
 
 
342 aa  72.8  0.00000000001  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000248153  normal 
 
 
-
 
NC_013421  Pecwa_2917  extracellular solute-binding protein family 1  27.5 
 
 
339 aa  72.8  0.00000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_0075  extracellular solute-binding protein  20.6 
 
 
498 aa  71.2  0.00000000003  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.735503  normal 
 
 
-
 
NC_002967  TDE0386  ABC transporter, periplasmic substrate-binding protein  24.32 
 
 
338 aa  70.9  0.00000000005  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.00000551212  n/a   
 
 
-
 
NC_013457  VEA_000766  ABC transporter, periplasmic substrate-binding protein  27.49 
 
 
336 aa  70.5  0.00000000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4977  extracellular solute-binding protein family 1  23.71 
 
 
347 aa  70.5  0.00000000006  Variovorax paradoxus S110  Bacteria  normal  0.187207  n/a   
 
 
-
 
NC_008786  Veis_0970  extracellular solute-binding protein  26.39 
 
 
340 aa  70.5  0.00000000006  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00000273849  normal 
 
 
-
 
NC_013203  Apar_0009  extracellular solute-binding protein family 1  27.83 
 
 
379 aa  69.7  0.0000000001  Atopobium parvulum DSM 20469  Bacteria  normal  0.892782  normal 
 
 
-
 
NC_007510  Bcep18194_A6494  ABC Fe3+ siderophore transporter, periplasmic ligand binding protein  25.86 
 
 
351 aa  69.3  0.0000000001  Burkholderia sp. 383  Bacteria  decreased coverage  0.000128013  normal  0.750448 
 
 
-
 
NC_011772  BCG9842_B3970  putative iron compound ABC transporter, iron compound-binding protein  25.12 
 
 
358 aa  69.3  0.0000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_04877  ABC-type Fe3+ transport system periplasmic component  27.49 
 
 
336 aa  69.3  0.0000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_3115  extracellular solute-binding protein  22.73 
 
 
342 aa  69.7  0.0000000001  Serratia proteamaculans 568  Bacteria  normal  0.0701659  normal 
 
 
-
 
NC_010084  Bmul_3135  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  26.7 
 
 
351 aa  69.3  0.0000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.0000124491 
 
 
-
 
NC_010184  BcerKBAB4_1237  extracellular metal-binding protein  25.12 
 
 
358 aa  69.3  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1436  iron compound ABC transporter, iron compound-binding protein, putative  24.64 
 
 
346 aa  68.2  0.0000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1235  iron compound ABC transporter iron compound-binding protein  24.64 
 
 
358 aa  68.2  0.0000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1212  iron ABC transporter solute-binding protein  24.64 
 
 
358 aa  68.2  0.0000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1214  iron ABC transporter solute-binding protein  24.64 
 
 
358 aa  68.2  0.0000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1476  putative iron compound ABC transporter, iron compound-binding protein  23.6 
 
 
358 aa  68.2  0.0000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1337  iron compound ABC transporter iron compound-binding protein  24.64 
 
 
358 aa  68.2  0.0000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1411  putative iron compound ABC transporter, iron compound-binding protein  24.64 
 
 
358 aa  68.2  0.0000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2899  extracellular solute-binding protein  28.33 
 
 
345 aa  67.4  0.0000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  decreased coverage  0.00994055 
 
 
-
 
NC_009668  Oant_2833  extracellular solute-binding protein  26.05 
 
 
320 aa  67.4  0.0000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.235826  n/a   
 
 
-
 
NC_011313  VSAL_II0811  extracellular solute-binding protein  27.17 
 
 
351 aa  66.6  0.0000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5367  extracellular solute-binding protein  26.49 
 
 
341 aa  66.2  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1374  putative iron compound ABC transporter, iron compound-binding protein  24.64 
 
 
358 aa  66.2  0.000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0833  extracellular solute-binding protein  23.65 
 
 
343 aa  65.5  0.000000002  Enterobacter sp. 638  Bacteria  normal  normal  0.752683 
 
 
-
 
NC_009667  Oant_1463  extracellular solute-binding protein  25 
 
 
326 aa  65.1  0.000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.512158  n/a   
 
 
-
 
NC_010002  Daci_1282  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  26.94 
 
 
347 aa  65.1  0.000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5874  extracellular solute-binding protein  26.77 
 
 
341 aa  65.1  0.000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009073  Pcal_0214  ABC transporter periplasmic-binding protein  26.55 
 
 
337 aa  65.1  0.000000003  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.308816 
 
 
-
 
NC_009073  Pcal_0248  extracellular solute-binding protein  20.56 
 
 
511 aa  64.3  0.000000004  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.370696 
 
 
-
 
NC_009483  Gura_1306  extracellular solute-binding protein  23.16 
 
 
369 aa  64.3  0.000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.701273  n/a   
 
 
-
 
NC_004311  BRA0720  ABC transporter, periplasmic substrate-binding protein  23.11 
 
 
341 aa  63.9  0.000000005  Brucella suis 1330  Bacteria  normal  0.631762  n/a   
 
 
-
 
NC_009504  BOV_A0676  ABC transporter, periplasmic substrate-binding protein  23.11 
 
 
341 aa  63.9  0.000000005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1808  extracellular solute-binding protein  24.14 
 
 
514 aa  63.9  0.000000006  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_012917  PC1_1366  extracellular solute-binding protein family 1  24.32 
 
 
344 aa  63.5  0.000000006  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.755106  n/a   
 
 
-
 
NC_007348  Reut_B5525  extracellular solute-binding protein  22.91 
 
 
340 aa  62.4  0.00000001  Ralstonia eutropha JMP134  Bacteria  normal  0.655164  n/a   
 
 
-
 
NC_008709  Ping_2746  ABC transporter periplasmic substrate-binding protein  24.42 
 
 
335 aa  62.8  0.00000001  Psychromonas ingrahamii 37  Bacteria  normal  0.553799  normal 
 
 
-
 
NC_009512  Pput_5008  extracellular solute-binding protein  25.95 
 
 
341 aa  62.8  0.00000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4877  extracellular solute-binding protein  28.22 
 
 
340 aa  62.8  0.00000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.713524  normal  0.38801 
 
 
-
 
NC_011353  ECH74115_0435  extracellular solute-binding protein, family 1  23.65 
 
 
343 aa  62.8  0.00000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5135  ABC transporter, periplasmic binding protein  26.4 
 
 
341 aa  62  0.00000002  Pseudomonas putida KT2440  Bacteria  normal  0.659918  normal 
 
 
-
 
NC_007643  Rru_A3199  extracellular solute-binding protein  26.06 
 
 
338 aa  62.4  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.680045  n/a   
 
 
-
 
NC_010322  PputGB1_5188  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  26.14 
 
 
341 aa  61.6  0.00000002  Pseudomonas putida GB-1  Bacteria  normal  0.491174  normal 
 
 
-
 
NC_013421  Pecwa_1772  extracellular solute-binding protein family 1  24.7 
 
 
344 aa  61.2  0.00000003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.320595  n/a   
 
 
-
 
NC_007948  Bpro_4694  extracellular solute-binding protein  27.11 
 
 
349 aa  61.6  0.00000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0545  ABC transporter, periplasmic substrate-binding protein  24.36 
 
 
339 aa  61.2  0.00000003  Vibrio cholerae O395  Bacteria  hitchhiker  0.001131  n/a   
 
 
-
 
NC_012852  Rleg_6061  extracellular solute-binding protein family 1  22.18 
 
 
342 aa  61.2  0.00000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1762  extracellular solute-binding protein family 1  22.5 
 
 
340 aa  60.8  0.00000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.66245  normal  0.133818 
 
 
-
 
NC_008346  Swol_2479  ABC transporter, periplasmic substrate-binding protein  27.44 
 
 
347 aa  60.1  0.00000009  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1097  extracellular solute-binding protein family 1  23.76 
 
 
337 aa  59.7  0.00000009  Variovorax paradoxus S110  Bacteria  normal  0.0890714  n/a   
 
 
-
 
NC_009620  Smed_3752  extracellular solute-binding protein  22.73 
 
 
342 aa  59.3  0.0000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.236177  normal 
 
 
-
 
NC_010501  PputW619_0330  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  25.41 
 
 
341 aa  59.7  0.0000001  Pseudomonas putida W619  Bacteria  normal  normal  0.631264 
 
 
-
 
NC_013946  Mrub_1201  extracellular solute-binding protein family 1  24.8 
 
 
320 aa  59.7  0.0000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.941139  normal  0.523727 
 
 
-
 
NC_013205  Aaci_0041  extracellular solute-binding protein family 1  23.23 
 
 
336 aa  58.9  0.0000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1753  putative ABC transporter, substrate-binding protein  25 
 
 
341 aa  58.9  0.0000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_0028  hypothetical protein  24.01 
 
 
470 aa  58.2  0.0000003  Pyrobaculum islandicum DSM 4184  Archaea  normal  normal 
 
 
-
 
NC_010525  Tneu_0944  hypothetical protein  25.22 
 
 
472 aa  58.2  0.0000003  Thermoproteus neutrophilus V24Sta  Archaea  normal  decreased coverage  0.0000501517 
 
 
-
 
NC_011658  BCAH187_A1866  putative ABC transporter, substrate-binding protein  25 
 
 
341 aa  57.8  0.0000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_1958  ABC transporter periplasmic-binding protein  25.22 
 
 
338 aa  57.8  0.0000004  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.0213047  hitchhiker  1.86869e-16 
 
 
-
 
NC_009376  Pars_1070  hypothetical protein  25.11 
 
 
475 aa  57.8  0.0000004  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1611  extracellular solute-binding protein  24.58 
 
 
341 aa  57.8  0.0000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.257155  n/a   
 
 
-
 
NC_003909  BCE_1812  ABC transporter, substrate-binding protein, putative  25 
 
 
341 aa  57.4  0.0000005  Bacillus cereus ATCC 10987  Bacteria  normal  0.98446  n/a   
 
 
-
 
NC_012880  Dd703_2485  extracellular solute-binding protein family 1  23.75 
 
 
343 aa  57.4  0.0000005  Dickeya dadantii Ech703  Bacteria  normal  0.390798  n/a   
 
 
-
 
NC_012917  PC1_1221  extracellular solute-binding protein family 1  23.89 
 
 
326 aa  57.4  0.0000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.141693  n/a   
 
 
-
 
NC_008752  Aave_3891  extracellular solute-binding protein  22.99 
 
 
327 aa  57  0.0000007  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK1563  ABC transporter, substrate-binding protein  25 
 
 
341 aa  55.8  0.000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0643  Fe3+ ABC transporter, iron-binding protein  24.38 
 
 
346 aa  55.8  0.000001  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.000121089  n/a   
 
 
-
 
NC_011772  BCG9842_B3590  putative ABC transporter, substrate-binding protein  25.32 
 
 
341 aa  56.2  0.000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4317  extracellular solute-binding protein  22.79 
 
 
343 aa  56.2  0.000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.362014 
 
 
-
 
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