More than 300 homologs were found in PanDaTox collection
for query gene Smed_3752 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_3752  extracellular solute-binding protein  100 
 
 
342 aa  701    Sinorhizobium medicae WSM419  Bacteria  normal  0.236177  normal 
 
 
-
 
NC_009504  BOV_A0676  ABC transporter, periplasmic substrate-binding protein  85.03 
 
 
341 aa  609  1e-173  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0720  ABC transporter, periplasmic substrate-binding protein  84.73 
 
 
341 aa  607  9.999999999999999e-173  Brucella suis 1330  Bacteria  normal  0.631762  n/a   
 
 
-
 
NC_011369  Rleg2_1761  extracellular solute-binding protein family 1  83.13 
 
 
341 aa  579  1e-164  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.893641  normal  0.0475771 
 
 
-
 
NC_012852  Rleg_6061  extracellular solute-binding protein family 1  80.59 
 
 
342 aa  570  1.0000000000000001e-162  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3115  extracellular solute-binding protein  74.33 
 
 
342 aa  531  1e-150  Serratia proteamaculans 568  Bacteria  normal  0.0701659  normal 
 
 
-
 
NC_007802  Jann_1363  extracellular solute-binding protein  59.63 
 
 
340 aa  412  1e-114  Jannaschia sp. CCS1  Bacteria  normal  0.634696  normal 
 
 
-
 
NC_010524  Lcho_4317  extracellular solute-binding protein  64.22 
 
 
343 aa  396  1e-109  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.362014 
 
 
-
 
NC_012791  Vapar_1097  extracellular solute-binding protein family 1  53.68 
 
 
337 aa  383  1e-105  Variovorax paradoxus S110  Bacteria  normal  0.0890714  n/a   
 
 
-
 
NC_009636  Smed_3281  extracellular solute-binding protein  50.9 
 
 
343 aa  347  2e-94  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6060  extracellular solute-binding protein family 1  49.84 
 
 
340 aa  338  9e-92  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4977  extracellular solute-binding protein family 1  48.31 
 
 
347 aa  337  1.9999999999999998e-91  Variovorax paradoxus S110  Bacteria  normal  0.187207  n/a   
 
 
-
 
NC_011353  ECH74115_0435  extracellular solute-binding protein, family 1  51.57 
 
 
343 aa  327  2.0000000000000001e-88  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1366  extracellular solute-binding protein family 1  50 
 
 
344 aa  318  7e-86  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.755106  n/a   
 
 
-
 
NC_012880  Dd703_2485  extracellular solute-binding protein family 1  50.78 
 
 
343 aa  318  9e-86  Dickeya dadantii Ech703  Bacteria  normal  0.390798  n/a   
 
 
-
 
NC_013421  Pecwa_1772  extracellular solute-binding protein family 1  50 
 
 
344 aa  317  1e-85  Pectobacterium wasabiae WPP163  Bacteria  normal  0.320595  n/a   
 
 
-
 
NC_009436  Ent638_0833  extracellular solute-binding protein  50.31 
 
 
343 aa  317  1e-85  Enterobacter sp. 638  Bacteria  normal  normal  0.752683 
 
 
-
 
NC_011369  Rleg2_1762  extracellular solute-binding protein family 1  48.64 
 
 
340 aa  318  1e-85  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.66245  normal  0.133818 
 
 
-
 
NC_008309  HS_0643  Fe3+ ABC transporter, iron-binding protein  48.36 
 
 
346 aa  311  7.999999999999999e-84  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.000121089  n/a   
 
 
-
 
NC_014212  Mesil_1991  extracellular solute-binding protein family 1  46.77 
 
 
342 aa  302  5.000000000000001e-81  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000248153  normal 
 
 
-
 
NC_009456  VC0395_0625  iron(III) ABC transporter, periplasmic iron-compound-binding protein  47.38 
 
 
344 aa  300  3e-80  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0641  Fe3+ ABC transporter, iron-binding protein  44.8 
 
 
343 aa  295  9e-79  Haemophilus somnus 129PT  Bacteria  normal  0.147653  n/a   
 
 
-
 
NC_013515  Smon_0283  extracellular solute-binding protein family 1  46.23 
 
 
342 aa  259  4e-68  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013530  Xcel_2993  extracellular solute-binding protein family 1  40.82 
 
 
350 aa  227  3e-58  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1638  iron ABC transporter substrate-binding protein  43.22 
 
 
266 aa  202  9e-51  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4649  extracellular solute-binding protein  33.97 
 
 
335 aa  174  1.9999999999999998e-42  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2917  extracellular solute-binding protein family 1  36 
 
 
339 aa  174  2.9999999999999996e-42  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0009  extracellular solute-binding protein family 1  35.43 
 
 
379 aa  173  2.9999999999999996e-42  Atopobium parvulum DSM 20469  Bacteria  normal  0.892782  normal 
 
 
-
 
NC_012917  PC1_1545  extracellular solute-binding protein family 1  36 
 
 
339 aa  172  7.999999999999999e-42  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.061269  n/a   
 
 
-
 
NC_009135  MmarC5_1570  extracellular solute-binding protein  35.59 
 
 
350 aa  164  1.0000000000000001e-39  Methanococcus maripaludis C5  Archaea  normal  0.840173  n/a   
 
 
-
 
NC_009637  MmarC7_1107  extracellular solute-binding protein  35.59 
 
 
343 aa  164  2.0000000000000002e-39  Methanococcus maripaludis C7  Archaea  normal  0.695758  normal 
 
 
-
 
NC_009635  Maeo_0333  extracellular solute-binding protein  34.12 
 
 
344 aa  161  1e-38  Methanococcus aeolicus Nankai-3  Archaea  normal  0.853179  n/a   
 
 
-
 
NC_008346  Swol_2479  ABC transporter, periplasmic substrate-binding protein  32.31 
 
 
347 aa  162  1e-38  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4877  extracellular solute-binding protein  32.15 
 
 
340 aa  158  2e-37  Sinorhizobium medicae WSM419  Bacteria  normal  0.713524  normal  0.38801 
 
 
-
 
NC_011772  BCG9842_B3970  putative iron compound ABC transporter, iron compound-binding protein  34.76 
 
 
358 aa  155  7e-37  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4473  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  32.24 
 
 
341 aa  155  8e-37  Ralstonia pickettii 12J  Bacteria  normal  normal  0.144148 
 
 
-
 
NC_012857  Rpic12D_4607  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  32.24 
 
 
341 aa  155  8e-37  Ralstonia pickettii 12D  Bacteria  normal  0.980284  normal 
 
 
-
 
NC_003909  BCE_1436  iron compound ABC transporter, iron compound-binding protein, putative  34.45 
 
 
346 aa  154  2e-36  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1235  iron compound ABC transporter iron compound-binding protein  34.45 
 
 
358 aa  154  2e-36  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1212  iron ABC transporter solute-binding protein  34.45 
 
 
358 aa  154  2e-36  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1214  iron ABC transporter solute-binding protein  34.45 
 
 
358 aa  154  2e-36  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1337  iron compound ABC transporter iron compound-binding protein  34.45 
 
 
358 aa  154  2e-36  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1411  putative iron compound ABC transporter, iron compound-binding protein  34.45 
 
 
358 aa  154  2e-36  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_1237  extracellular metal-binding protein  34.15 
 
 
358 aa  154  2.9999999999999998e-36  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1374  putative iron compound ABC transporter, iron compound-binding protein  34.45 
 
 
358 aa  153  5e-36  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2899  extracellular solute-binding protein  34.62 
 
 
345 aa  153  5e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  decreased coverage  0.00994055 
 
 
-
 
NC_011658  BCAH187_A1476  putative iron compound ABC transporter, iron compound-binding protein  34.15 
 
 
358 aa  152  5.9999999999999996e-36  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2476  ABC-type iron(III)-binding periplasmic protein precursor  31.43 
 
 
364 aa  145  7.0000000000000006e-34  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000339151  n/a   
 
 
-
 
NC_009674  Bcer98_1048  extracellular solute-binding protein  33.52 
 
 
356 aa  144  2e-33  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0051  extracellular solute-binding protein family 1  30.65 
 
 
378 aa  141  1.9999999999999998e-32  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.115612  n/a   
 
 
-
 
NC_007348  Reut_B5525  extracellular solute-binding protein  32.2 
 
 
340 aa  140  3e-32  Ralstonia eutropha JMP134  Bacteria  normal  0.655164  n/a   
 
 
-
 
NC_013457  VEA_000766  ABC transporter, periplasmic substrate-binding protein  29.5 
 
 
336 aa  140  3.9999999999999997e-32  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04877  ABC-type Fe3+ transport system periplasmic component  29.79 
 
 
336 aa  140  4.999999999999999e-32  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_5135  ABC transporter, periplasmic binding protein  30.63 
 
 
341 aa  138  2e-31  Pseudomonas putida KT2440  Bacteria  normal  0.659918  normal 
 
 
-
 
NC_009456  VC0395_0545  ABC transporter, periplasmic substrate-binding protein  28.49 
 
 
339 aa  135  8e-31  Vibrio cholerae O395  Bacteria  hitchhiker  0.001131  n/a   
 
 
-
 
NC_007492  Pfl01_5367  extracellular solute-binding protein  31.13 
 
 
341 aa  134  1.9999999999999998e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1282  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  30.09 
 
 
347 aa  133  5e-30  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0811  extracellular solute-binding protein  29 
 
 
351 aa  132  6e-30  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0386  ABC transporter, periplasmic substrate-binding protein  29.49 
 
 
338 aa  131  2.0000000000000002e-29  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.00000551212  n/a   
 
 
-
 
NC_010501  PputW619_0330  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.91 
 
 
341 aa  131  2.0000000000000002e-29  Pseudomonas putida W619  Bacteria  normal  normal  0.631264 
 
 
-
 
NC_013170  Ccur_04090  ABC-type Fe3+ transport system, periplasmic component  29.26 
 
 
367 aa  131  2.0000000000000002e-29  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.510256 
 
 
-
 
NC_010322  PputGB1_5188  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.91 
 
 
341 aa  130  3e-29  Pseudomonas putida GB-1  Bacteria  normal  0.491174  normal 
 
 
-
 
NC_009512  Pput_5008  extracellular solute-binding protein  29.91 
 
 
341 aa  129  5.0000000000000004e-29  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2746  ABC transporter periplasmic substrate-binding protein  30 
 
 
335 aa  129  9.000000000000001e-29  Psychromonas ingrahamii 37  Bacteria  normal  0.553799  normal 
 
 
-
 
NC_008786  Veis_0970  extracellular solute-binding protein  31.1 
 
 
340 aa  128  1.0000000000000001e-28  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00000273849  normal 
 
 
-
 
NC_007348  Reut_B5874  extracellular solute-binding protein  31.27 
 
 
341 aa  126  5e-28  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4694  extracellular solute-binding protein  32.43 
 
 
349 aa  126  7e-28  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5376  putative lipoprotein  33.58 
 
 
344 aa  124  2e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4941  ABC transporter substrate-binding protein  33.72 
 
 
344 aa  121  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5110  putative lipoprotein  33.21 
 
 
344 aa  121  1.9999999999999998e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5350  putative lipoprotein  33.21 
 
 
344 aa  121  1.9999999999999998e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5501  putative lipoprotein  33.21 
 
 
344 aa  121  1.9999999999999998e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5430  putative lipoprotein  32.48 
 
 
344 aa  121  1.9999999999999998e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4956  ABC transporter substrate-binding protein  32.85 
 
 
344 aa  120  3e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3791  ABC transporter, substrate-binding protein  30.19 
 
 
344 aa  117  1.9999999999999998e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5572  putative lipoprotein  32.95 
 
 
344 aa  117  3e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A5382  putative lipoprotein  32.95 
 
 
344 aa  117  3e-25  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5052  putative lipoprotein  31.75 
 
 
344 aa  115  7.999999999999999e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6494  ABC Fe3+ siderophore transporter, periplasmic ligand binding protein  28.99 
 
 
351 aa  115  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  decreased coverage  0.000128013  normal  0.750448 
 
 
-
 
NC_010084  Bmul_3135  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.07 
 
 
351 aa  114  3e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.0000124491 
 
 
-
 
NC_010508  Bcenmc03_3159  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  28.99 
 
 
351 aa  113  4.0000000000000004e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.451295  normal  0.0280644 
 
 
-
 
NC_011772  BCG9842_B3590  putative ABC transporter, substrate-binding protein  30.66 
 
 
341 aa  111  1.0000000000000001e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2025  extracellular solute-binding protein family 1  30.3 
 
 
296 aa  112  1.0000000000000001e-23  Eggerthella lenta DSM 2243  Bacteria  normal  0.727103  hitchhiker  0.0000000026678 
 
 
-
 
NC_010184  BcerKBAB4_1611  extracellular solute-binding protein  29.97 
 
 
341 aa  110  4.0000000000000004e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.257155  n/a   
 
 
-
 
NC_011725  BCB4264_A1753  putative ABC transporter, substrate-binding protein  29.97 
 
 
341 aa  108  9.000000000000001e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5871  extracellular solute-binding protein family 1  27.89 
 
 
342 aa  107  3e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0432658  n/a   
 
 
-
 
NC_009012  Cthe_1588  extracellular solute-binding protein  30.63 
 
 
368 aa  107  3e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3423  2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein  32.14 
 
 
363 aa  107  4e-22  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.074131  normal  0.0682779 
 
 
-
 
NC_011658  BCAH187_A1866  putative ABC transporter, substrate-binding protein  29.62 
 
 
341 aa  106  5e-22  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1485  extracellular solute-binding protein  25.49 
 
 
470 aa  106  5e-22  Thermofilum pendens Hrk 5  Archaea  normal  0.0472403  n/a   
 
 
-
 
NC_003909  BCE_1812  ABC transporter, substrate-binding protein, putative  29.62 
 
 
341 aa  106  7e-22  Bacillus cereus ATCC 10987  Bacteria  normal  0.98446  n/a   
 
 
-
 
NC_006274  BCZK1563  ABC transporter, substrate-binding protein  29.27 
 
 
341 aa  105  1e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0223  hypothetical protein  29.75 
 
 
339 aa  105  2e-21  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0223  putative iron compound ABC transporter, iron compound-binding protein  29.75 
 
 
339 aa  103  3e-21  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2031  ABC-type transporter, periplasmic component  28.93 
 
 
331 aa  103  4e-21  Eggerthella lenta DSM 2243  Bacteria  normal  0.702659  hitchhiker  0.000664756 
 
 
-
 
NC_008688  Pden_4911  extracellular solute-binding protein  31.93 
 
 
333 aa  103  4e-21  Paracoccus denitrificans PD1222  Bacteria  normal  0.224202  normal  0.316622 
 
 
-
 
NC_008391  Bamb_4661  ABC transporter periplasmic-binding protein  29.63 
 
 
362 aa  101  2e-20  Burkholderia ambifaria AMMD  Bacteria  normal  0.762259  normal  0.137959 
 
 
-
 
NC_010515  Bcenmc03_4968  2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein  30.42 
 
 
363 aa  99.8  6e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.537601  normal  0.0916324 
 
 
-
 
NC_008061  Bcen_3067  ABC transporter periplasmic-binding protein  29.97 
 
 
363 aa  99.8  6e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.127261  n/a   
 
 
-
 
NC_008543  Bcen2424_5300  ABC transporter periplasmic-binding protein  29.97 
 
 
363 aa  99.8  6e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  0.218142  normal  0.0163118 
 
 
-
 
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