| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1808 |
|---|
| Symbol | |
|---|
| ID | 4601801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1748148 |
|---|
| End bp | 1749692 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639774581 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_921206 |
|---|
| Protein GI | 119720711 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCA AGGTTCTCCT GGTACTAGCA GTACTCGTAC TCGTAGCCCT GGGAGTAGCT
CTGGTAGTCC TACAGCAGAA AGCCCCTCCG AGCGCTCCGC CGGCTAACCA GACCCAGCAG
CCTTCCCCTG GACCTGTTAA TCAAACGCCT TCCACGAAGC CGCCGGCTAA CCAGACCCAG
CAGCCACCCG CGGGTGAGGG TATAACCCTT TACGTTATAA CACGGCACGA GCAGACAATC
CAAGACTTGA CGAGAACAAT GTTCCTTAGT AGTAGCGTGG CGAAAAAGTA CAACATCAAG
AACATAGTCT TCCTGCCTAT AAACGCGGAG CAGTGGCCCG ACTATATCAA GAACGCCGCC
CAGAAGGGGC AGGGTATAGA CGTCGCCTGG GGAGGTGGAC CAACGCTGTT CAACCTGATA
GACGACATGG GCTTGATCGA GCCGATAGAC TTGGACAAGC ACCCAGAGTT CAAGATAGTG
ATGGACGAGG TCGCCAAGCT ACCCAAGACG ATTGCAGGGG CGGAGACGTA CAAGGTTGGA
AGTGACGGAA AGATACACTG GATAGGCGCG AGCGTGAGTA GCTTCGGCTT CACGGTAAAC
AGGGATCTTC TCAACAGGTA TAAGCTACCA ATGCCTCAGC GCTGGGCGGA TCTCGGGAAC
CCCGCGTACG CCGTGACGTT GCCCGCGCTA CAGCTCGTAG GAATAGCAGA CCCCACGATG
AGCACGAGCA ATACCAGGAT ATTCGAGATT ATACTCCAGG CGTACGGGTG GGATAAGGGT
TGGCGCACAC TCACGCTCAT CGCGGCGAAC TCCAAGATAT TCAGCGGTAG TAGCGACGTA
AGAGACGCTG TCATACGCGG GGATATCGCG ATAGGTACTA CGATAGACTT CTACGGCTAC
ACGGCGCAGC AGCAGAACCC CTCGTGCCTC TACATAATAC CGCCAGGCGA GAGCATAGTG
AACGCAGACC CCATAGCGAT CCTTAAGGGT TCGCGGCACC CCGAAGCGGC CGCCGCCTTC
GTGGCCTGGG TTCTCAACGA GACGGGAGGA CAGCTGGTGT GGCTTGACCC GAACATAAAC
AGGCTCCCGA TAAACCCGAG GGTTTTCGAC ACGCCGCAGG GCGCCCGGAG ACCCGACTTG
AAGAAAGCAC TTGAGGACGT TATCAACGCC GGGGGTATAG CGTTCAACGA GTCACTCTCC
TCCGCGTGGG TTACCGCCGT TGTAGACTAC TTCAAGGCGA CGCTCGTAAA CGCGCACGAC
GACCTTCAGC CCGTCTGGGC CCAGATAGTG AAGGCTTACA GGGATAAGAA GATAACCGAG
GCGCAGTTCC AACAACTAGT CACGCAGCTG ACAGACTTCG TTACGTTCAC GGACCCGCTT
ACTGGGCAAC AGACGACCTT CACGCTCGAC TACGCTATAA AGATAAGCCC GAAGCTCGCC
AGCGACCCCT CCATATACCA GAGGCTGATG AACGACTGGA CAAGCGCGGC GAGGGCAAAG
TACCTAAAGG TGCAGTCGTT GCTAAAGCAG ATGACCGGAG GCTAG
|
|---|
| Protein sequence | MNSKVLLVLA VLVLVALGVA LVVLQQKAPP SAPPANQTQQ PSPGPVNQTP STKPPANQTQ
QPPAGEGITL YVITRHEQTI QDLTRTMFLS SSVAKKYNIK NIVFLPINAE QWPDYIKNAA
QKGQGIDVAW GGGPTLFNLI DDMGLIEPID LDKHPEFKIV MDEVAKLPKT IAGAETYKVG
SDGKIHWIGA SVSSFGFTVN RDLLNRYKLP MPQRWADLGN PAYAVTLPAL QLVGIADPTM
STSNTRIFEI ILQAYGWDKG WRTLTLIAAN SKIFSGSSDV RDAVIRGDIA IGTTIDFYGY
TAQQQNPSCL YIIPPGESIV NADPIAILKG SRHPEAAAAF VAWVLNETGG QLVWLDPNIN
RLPINPRVFD TPQGARRPDL KKALEDVINA GGIAFNESLS SAWVTAVVDY FKATLVNAHD
DLQPVWAQIV KAYRDKKITE AQFQQLVTQL TDFVTFTDPL TGQQTTFTLD YAIKISPKLA
SDPSIYQRLM NDWTSAARAK YLKVQSLLKQ MTGG
|
|---|
| |