208 homologs were found in PanDaTox collection
for query gene Sama_3241 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_3241  phosphoglycerate transport regulatory protein PgtC, putative  100 
 
 
419 aa  866    Shewanella amazonensis SB2B  Bacteria  normal  normal  0.560629 
 
 
-
 
NC_008322  Shewmr7_2751  putative phosphoglycerate transport regulatory protein PgtC  42.86 
 
 
437 aa  345  8.999999999999999e-94  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2683  putative phosphoglycerate transport regulatory protein PgtC  42.62 
 
 
437 aa  344  2e-93  Shewanella sp. MR-4  Bacteria  normal  0.322745  normal  0.30829 
 
 
-
 
NC_009456  VC0395_0644  putative phosphoglycerate transport regulatory protein PgtC  39.51 
 
 
440 aa  281  1e-74  Vibrio cholerae O395  Bacteria  normal  0.788627  n/a   
 
 
-
 
NC_011083  SeHA_C2651  phosphoglycerate transport: protein for signal transmission  34.43 
 
 
407 aa  216  8e-55  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0959912  hitchhiker  0.000467532 
 
 
-
 
NC_011080  SNSL254_A2587  phosphoglycerate transport: protein for signal transmission  34.61 
 
 
436 aa  215  9.999999999999999e-55  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.259528  normal 
 
 
-
 
NC_011149  SeAg_B2539  phosphoglycerate transport: protein for signal transmission  34.66 
 
 
436 aa  215  9.999999999999999e-55  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2628  phosphoglycerate transport: protein for signal transmission  34.66 
 
 
436 aa  215  9.999999999999999e-55  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_4658  extracellular solute-binding protein  32.05 
 
 
440 aa  186  7e-46  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4801  extracellular solute-binding protein  31.22 
 
 
442 aa  171  2e-41  Delftia acidovorans SPH-1  Bacteria  normal  0.433474  normal 
 
 
-
 
NC_007947  Mfla_1990  putative regulatory lipoprotein  27.96 
 
 
419 aa  130  4.0000000000000003e-29  Methylobacillus flagellatus KT  Bacteria  normal  0.307134  normal 
 
 
-
 
NC_008688  Pden_4655  putative regulatory lipoprotein  30.94 
 
 
395 aa  124  3e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2968  extracellular solute-binding protein  26.28 
 
 
445 aa  119  9e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.812096 
 
 
-
 
NC_012560  Avin_52130  periplasmic binding protein  26.43 
 
 
388 aa  112  1.0000000000000001e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3495  extracellular solute-binding protein  26.07 
 
 
375 aa  96.7  7e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0500866  normal  0.246878 
 
 
-
 
NC_008698  Tpen_1485  extracellular solute-binding protein  24.62 
 
 
470 aa  96.7  8e-19  Thermofilum pendens Hrk 5  Archaea  normal  0.0472403  n/a   
 
 
-
 
NC_009376  Pars_1168  extracellular solute-binding protein  25.63 
 
 
516 aa  95.9  1e-18  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  0.731614  normal  0.0353149 
 
 
-
 
NC_009635  Maeo_0333  extracellular solute-binding protein  27.44 
 
 
344 aa  92.8  9e-18  Methanococcus aeolicus Nankai-3  Archaea  normal  0.853179  n/a   
 
 
-
 
NC_008701  Pisl_0075  extracellular solute-binding protein  24.68 
 
 
498 aa  92  2e-17  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.735503  normal 
 
 
-
 
NC_009637  MmarC7_1107  extracellular solute-binding protein  25.69 
 
 
343 aa  85.1  0.000000000000002  Methanococcus maripaludis C7  Archaea  normal  0.695758  normal 
 
 
-
 
NC_009135  MmarC5_1570  extracellular solute-binding protein  25.57 
 
 
350 aa  85.1  0.000000000000002  Methanococcus maripaludis C5  Archaea  normal  0.840173  n/a   
 
 
-
 
NC_010525  Tneu_1007  extracellular solute-binding protein  24.26 
 
 
485 aa  84  0.000000000000004  Thermoproteus neutrophilus V24Sta  Archaea  normal  0.256846  decreased coverage  0.000168852 
 
 
-
 
NC_008698  Tpen_1808  extracellular solute-binding protein  25.31 
 
 
514 aa  83.6  0.000000000000007  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_009073  Pcal_0248  extracellular solute-binding protein  25.07 
 
 
511 aa  81.3  0.00000000000003  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.370696 
 
 
-
 
NC_013171  Apre_0051  extracellular solute-binding protein family 1  25.1 
 
 
378 aa  80.9  0.00000000000004  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.115612  n/a   
 
 
-
 
NC_011769  DvMF_1586  extracellular solute-binding protein family 1  25.35 
 
 
333 aa  79.7  0.00000000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010084  Bmul_3135  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  28.57 
 
 
351 aa  77  0.0000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.0000124491 
 
 
-
 
NC_007510  Bcep18194_A6494  ABC Fe3+ siderophore transporter, periplasmic ligand binding protein  28.02 
 
 
351 aa  76.3  0.000000000001  Burkholderia sp. 383  Bacteria  decreased coverage  0.000128013  normal  0.750448 
 
 
-
 
NC_010525  Tneu_0944  hypothetical protein  27.61 
 
 
472 aa  74.7  0.000000000003  Thermoproteus neutrophilus V24Sta  Archaea  normal  decreased coverage  0.0000501517 
 
 
-
 
NC_012857  Rpic12D_4607  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  27.62 
 
 
341 aa  72.8  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  0.980284  normal 
 
 
-
 
NC_010678  Rpic_4473  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  27.62 
 
 
341 aa  72.8  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.144148 
 
 
-
 
NC_009436  Ent638_2070  extracellular solute-binding protein  26.21 
 
 
322 aa  72.8  0.00000000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE0386  ABC transporter, periplasmic substrate-binding protein  25.97 
 
 
338 aa  71.2  0.00000000003  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.00000551212  n/a   
 
 
-
 
NC_009718  Fnod_0311  ABC transporter periplasmic-binding protein  24.62 
 
 
325 aa  71.2  0.00000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.00000568515  n/a   
 
 
-
 
NC_010508  Bcenmc03_3159  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  27.47 
 
 
351 aa  70.5  0.00000000005  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.451295  normal  0.0280644 
 
 
-
 
NC_009484  Acry_0297  ABC-type Fe3+ transport system periplasmic component-like protein  26.51 
 
 
340 aa  69.7  0.00000000008  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1221  extracellular solute-binding protein family 1  25.2 
 
 
326 aa  69.7  0.0000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.141693  n/a   
 
 
-
 
NC_013170  Ccur_04090  ABC-type Fe3+ transport system, periplasmic component  25.65 
 
 
367 aa  69.3  0.0000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.510256 
 
 
-
 
NC_008701  Pisl_0028  hypothetical protein  25.79 
 
 
470 aa  69.3  0.0000000001  Pyrobaculum islandicum DSM 4184  Archaea  normal  normal 
 
 
-
 
NC_007348  Reut_B5874  extracellular solute-binding protein  28.42 
 
 
341 aa  68.6  0.0000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0545  ABC transporter, periplasmic substrate-binding protein  28.3 
 
 
339 aa  68.6  0.0000000002  Vibrio cholerae O395  Bacteria  hitchhiker  0.001131  n/a   
 
 
-
 
NC_012791  Vapar_4977  extracellular solute-binding protein family 1  26.01 
 
 
347 aa  67.8  0.0000000003  Variovorax paradoxus S110  Bacteria  normal  0.187207  n/a   
 
 
-
 
NC_009073  Pcal_0214  ABC transporter periplasmic-binding protein  25.17 
 
 
337 aa  67.8  0.0000000004  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.308816 
 
 
-
 
NC_013457  VEA_000766  ABC transporter, periplasmic substrate-binding protein  27.67 
 
 
336 aa  67  0.0000000006  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1545  extracellular solute-binding protein family 1  25.54 
 
 
339 aa  67  0.0000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.061269  n/a   
 
 
-
 
NC_008346  Swol_2476  ABC-type iron(III)-binding periplasmic protein precursor  22.4 
 
 
364 aa  66.6  0.0000000007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000339151  n/a   
 
 
-
 
NC_007492  Pfl01_5367  extracellular solute-binding protein  28.65 
 
 
341 aa  65.9  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0811  extracellular solute-binding protein  27.94 
 
 
351 aa  65.9  0.000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3281  extracellular solute-binding protein  21.4 
 
 
343 aa  65.9  0.000000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2917  extracellular solute-binding protein family 1  24.44 
 
 
339 aa  65.5  0.000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1991  extracellular solute-binding protein family 1  23.61 
 
 
342 aa  65.5  0.000000002  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000248153  normal 
 
 
-
 
NC_013205  Aaci_0041  extracellular solute-binding protein family 1  27.54 
 
 
336 aa  64.3  0.000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2479  ABC transporter, periplasmic substrate-binding protein  26.99 
 
 
347 aa  64.3  0.000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04877  ABC-type Fe3+ transport system periplasmic component  27.04 
 
 
336 aa  63.5  0.000000006  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4877  extracellular solute-binding protein  25 
 
 
340 aa  62.4  0.00000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.713524  normal  0.38801 
 
 
-
 
NC_010322  PputGB1_5188  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  26.67 
 
 
341 aa  62.4  0.00000001  Pseudomonas putida GB-1  Bacteria  normal  0.491174  normal 
 
 
-
 
NC_009073  Pcal_0650  hypothetical protein  24.25 
 
 
467 aa  62.8  0.00000001  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_002947  PP_5135  ABC transporter, periplasmic binding protein  26.63 
 
 
341 aa  61.6  0.00000002  Pseudomonas putida KT2440  Bacteria  normal  0.659918  normal 
 
 
-
 
NC_011894  Mnod_5871  extracellular solute-binding protein family 1  24.74 
 
 
342 aa  61.6  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0432658  n/a   
 
 
-
 
NC_011772  BCG9842_B3970  putative iron compound ABC transporter, iron compound-binding protein  27.07 
 
 
358 aa  62.4  0.00000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3199  extracellular solute-binding protein  31.43 
 
 
338 aa  61.6  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.680045  n/a   
 
 
-
 
NC_012852  Rleg_6060  extracellular solute-binding protein family 1  24.21 
 
 
340 aa  61.6  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1282  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.11 
 
 
347 aa  62.4  0.00000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0330  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.71 
 
 
341 aa  62  0.00000002  Pseudomonas putida W619  Bacteria  normal  normal  0.631264 
 
 
-
 
NC_003909  BCE_1436  iron compound ABC transporter, iron compound-binding protein, putative  26.52 
 
 
346 aa  61.2  0.00000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1235  iron compound ABC transporter iron compound-binding protein  26.52 
 
 
358 aa  61.6  0.00000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1212  iron ABC transporter solute-binding protein  26.52 
 
 
358 aa  61.6  0.00000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1476  putative iron compound ABC transporter, iron compound-binding protein  26.52 
 
 
358 aa  61.2  0.00000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1214  iron ABC transporter solute-binding protein  26.52 
 
 
358 aa  61.6  0.00000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1337  iron compound ABC transporter iron compound-binding protein  26.52 
 
 
358 aa  61.6  0.00000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1411  putative iron compound ABC transporter, iron compound-binding protein  26.52 
 
 
358 aa  61.6  0.00000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_004311  BRA0720  ABC transporter, periplasmic substrate-binding protein  25 
 
 
341 aa  60.8  0.00000004  Brucella suis 1330  Bacteria  normal  0.631762  n/a   
 
 
-
 
NC_009504  BOV_A0676  ABC transporter, periplasmic substrate-binding protein  25 
 
 
341 aa  61.2  0.00000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_5008  extracellular solute-binding protein  26.67 
 
 
341 aa  61.2  0.00000004  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3791  ABC transporter, substrate-binding protein  21.6 
 
 
344 aa  60.5  0.00000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1554  extracellular solute-binding protein  24.52 
 
 
354 aa  60.1  0.00000007  Thermofilum pendens Hrk 5  Archaea  normal  0.202841  n/a   
 
 
-
 
NC_008786  Veis_0970  extracellular solute-binding protein  26.03 
 
 
340 aa  60.1  0.00000007  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00000273849  normal 
 
 
-
 
NC_010184  BcerKBAB4_1237  extracellular metal-binding protein  25.13 
 
 
358 aa  60.1  0.00000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1097  extracellular solute-binding protein family 1  31 
 
 
337 aa  59.3  0.0000001  Variovorax paradoxus S110  Bacteria  normal  0.0890714  n/a   
 
 
-
 
NC_007348  Reut_B5525  extracellular solute-binding protein  29.41 
 
 
340 aa  59.3  0.0000001  Ralstonia eutropha JMP134  Bacteria  normal  0.655164  n/a   
 
 
-
 
NC_011725  BCB4264_A1374  putative iron compound ABC transporter, iron compound-binding protein  26.52 
 
 
358 aa  59.3  0.0000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0223  putative iron compound ABC transporter, iron compound-binding protein  22.83 
 
 
339 aa  59.7  0.0000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_1958  ABC transporter periplasmic-binding protein  22.39 
 
 
338 aa  59.3  0.0000001  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.0213047  hitchhiker  1.86869e-16 
 
 
-
 
NC_009376  Pars_1070  hypothetical protein  23.39 
 
 
475 aa  59.3  0.0000001  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_009376  Pars_2140  ABC transporter periplasmic-binding protein  27.51 
 
 
338 aa  59.3  0.0000001  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_009668  Oant_2833  extracellular solute-binding protein  22.07 
 
 
320 aa  58.9  0.0000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.235826  n/a   
 
 
-
 
NC_008262  CPR_0223  hypothetical protein  22.46 
 
 
339 aa  58.9  0.0000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2899  extracellular solute-binding protein  22.9 
 
 
345 aa  58.5  0.0000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  decreased coverage  0.00994055 
 
 
-
 
NC_008709  Ping_2746  ABC transporter periplasmic substrate-binding protein  29.58 
 
 
335 aa  58.5  0.0000002  Psychromonas ingrahamii 37  Bacteria  normal  0.553799  normal 
 
 
-
 
NC_011725  BCB4264_A1753  putative ABC transporter, substrate-binding protein  24.19 
 
 
341 aa  58.2  0.0000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2025  extracellular solute-binding protein family 1  24.38 
 
 
296 aa  57.4  0.0000004  Eggerthella lenta DSM 2243  Bacteria  normal  0.727103  hitchhiker  0.0000000026678 
 
 
-
 
NC_010184  BcerKBAB4_1611  extracellular solute-binding protein  24.44 
 
 
341 aa  57.4  0.0000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.257155  n/a   
 
 
-
 
NC_009620  Smed_3752  extracellular solute-binding protein  24.21 
 
 
342 aa  57.4  0.0000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.236177  normal 
 
 
-
 
NC_010524  Lcho_4317  extracellular solute-binding protein  31.58 
 
 
343 aa  57.4  0.0000005  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.362014 
 
 
-
 
NC_006274  BCZK1563  ABC transporter, substrate-binding protein  23.32 
 
 
341 aa  57  0.0000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1866  putative ABC transporter, substrate-binding protein  23.72 
 
 
341 aa  57  0.0000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1812  ABC transporter, substrate-binding protein, putative  23.72 
 
 
341 aa  56.6  0.0000007  Bacillus cereus ATCC 10987  Bacteria  normal  0.98446  n/a   
 
 
-
 
NC_011772  BCG9842_B3590  putative ABC transporter, substrate-binding protein  24.19 
 
 
341 aa  56.6  0.0000007  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1762  extracellular solute-binding protein family 1  26.44 
 
 
340 aa  56.6  0.0000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.66245  normal  0.133818 
 
 
-
 
NC_013203  Apar_0009  extracellular solute-binding protein family 1  22.39 
 
 
379 aa  55.8  0.000001  Atopobium parvulum DSM 20469  Bacteria  normal  0.892782  normal 
 
 
-
 
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