Gene Sfum_2899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_2899 
Symbol 
ID4458761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3576837 
End bp3577874 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content57% 
IMG OID639703673 
Productextracellular solute-binding protein 
Protein accessionYP_847011 
Protein GI116750324 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1840] ABC-type Fe3+ transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR03261] putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00994055 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCCGGCT ATGGAAAACA CGTCAGACTC ATCGCTGCAA CGCTTGCGGT ATTTGCCGCC 
GCGCTCGTCG CTCCATTTGC GCACGCCGAA GACCTCGTCG TCTACACGGC CCTTGAAGAC
GACGAATACC CTGCATACCT GGAACTCTTC AAGAAGGCGC ATCCGGATGT TAACGTGAAA
ATCGTCAGGG ATTCCACCGG TATTGTCACA GCCAAACTGA TGGCCGAAAA AGACAATCCT
CAGGCGGACG TGATCTGGGG CGTGGCGGCC ACGAGCCTCC TGGTCTGCGA TGCGGCGGGG
ATGCTGCAAG GATACGCCCC CGGGGATGTC GATAAAGTGA ATCCGAGTAT GAAAGACTCA
TCCGCACCTC CCCGCTGGGT TGGGATAAAG GCATGGGAAA CGGGCTTTTG CGTGAATACC
GTGGAAGCGA AATCGCAGAA TCTGCCGATT CCGAAATCCC TCGCCGACCT GGCAAAGCCC
TTGTACAAAG GTAAAATCGT CATGCCCAAC CCGGCGTCTT CCGGCACGGG TTTCCTTACC
GTCTCGGCGA TTCTGCAGAT GATGGGCGAG AGGCAGGGCT GGGAATACCT GGACAAATTG
CACGAGAACA TCGCGCAATA CACGCATTCC GGTTCCAAGC CCTGCAAGAT GGCCGGGGCG
GGTGAGTACC CCATCGGTAT TTCGTTCGGC TACCGCGGCA TCATCCAAAA GAAAAAGGGT
GAACCTGTTG AAACGGTCTT CCCGAGCGAA GGCTGCGGCT GGGACGTCGA AGCCAACGCT
CTCGTGAAAA AGACTCCGGT CAAGGAATCC GCGAAGAAAT TCCTGGATTG GGCTCTGAGC
CCTGAAGTGA TGAAGATGTA CGCCAGGGTC TATCCCGTTA CGGCATATCC GACCGGGGAG
CCGGTTCCCG AGGGATATCC GTCCGATCCG TTCAAGCAGC TTGTGAAAAA CGACCTTGCG
TGGGCGGCGA AAAATCGAGA CGCCATACTG ACGGAATGGA CCAGGCGATA CGACGGCAAA
AGCGAAGCCC GAAAGTAA
 
Protein sequence
MPGYGKHVRL IAATLAVFAA ALVAPFAHAE DLVVYTALED DEYPAYLELF KKAHPDVNVK 
IVRDSTGIVT AKLMAEKDNP QADVIWGVAA TSLLVCDAAG MLQGYAPGDV DKVNPSMKDS
SAPPRWVGIK AWETGFCVNT VEAKSQNLPI PKSLADLAKP LYKGKIVMPN PASSGTGFLT
VSAILQMMGE RQGWEYLDKL HENIAQYTHS GSKPCKMAGA GEYPIGISFG YRGIIQKKKG
EPVETVFPSE GCGWDVEANA LVKKTPVKES AKKFLDWALS PEVMKMYARV YPVTAYPTGE
PVPEGYPSDP FKQLVKNDLA WAAKNRDAIL TEWTRRYDGK SEARK