294 homologs were found in PanDaTox collection
for query gene Pden_4658 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4658  extracellular solute-binding protein  100 
 
 
440 aa  894    Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4801  extracellular solute-binding protein  48.69 
 
 
442 aa  388  1e-106  Delftia acidovorans SPH-1  Bacteria  normal  0.433474  normal 
 
 
-
 
NC_007947  Mfla_1990  putative regulatory lipoprotein  32.68 
 
 
419 aa  220  3e-56  Methylobacillus flagellatus KT  Bacteria  normal  0.307134  normal 
 
 
-
 
NC_010581  Bind_2968  extracellular solute-binding protein  33 
 
 
445 aa  205  1e-51  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.812096 
 
 
-
 
NC_008322  Shewmr7_2751  putative phosphoglycerate transport regulatory protein PgtC  30.28 
 
 
437 aa  196  5.000000000000001e-49  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2683  putative phosphoglycerate transport regulatory protein PgtC  29.85 
 
 
437 aa  194  2e-48  Shewanella sp. MR-4  Bacteria  normal  0.322745  normal  0.30829 
 
 
-
 
NC_008700  Sama_3241  phosphoglycerate transport regulatory protein PgtC, putative  32.32 
 
 
419 aa  195  2e-48  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.560629 
 
 
-
 
NC_012560  Avin_52130  periplasmic binding protein  30.71 
 
 
388 aa  184  2.0000000000000003e-45  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4655  putative regulatory lipoprotein  31.66 
 
 
395 aa  183  6e-45  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2539  phosphoglycerate transport: protein for signal transmission  29.29 
 
 
436 aa  166  6.9999999999999995e-40  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2628  phosphoglycerate transport: protein for signal transmission  29.29 
 
 
436 aa  166  6.9999999999999995e-40  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2651  phosphoglycerate transport: protein for signal transmission  29.29 
 
 
407 aa  166  8e-40  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0959912  hitchhiker  0.000467532 
 
 
-
 
NC_011080  SNSL254_A2587  phosphoglycerate transport: protein for signal transmission  29.16 
 
 
436 aa  164  2.0000000000000002e-39  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.259528  normal 
 
 
-
 
NC_008554  Sfum_3495  extracellular solute-binding protein  28.03 
 
 
375 aa  147  4.0000000000000006e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0500866  normal  0.246878 
 
 
-
 
NC_009456  VC0395_0644  putative phosphoglycerate transport regulatory protein PgtC  28.07 
 
 
440 aa  144  3e-33  Vibrio cholerae O395  Bacteria  normal  0.788627  n/a   
 
 
-
 
NC_009376  Pars_1168  extracellular solute-binding protein  29.33 
 
 
516 aa  129  1.0000000000000001e-28  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  0.731614  normal  0.0353149 
 
 
-
 
NC_008701  Pisl_0075  extracellular solute-binding protein  30.77 
 
 
498 aa  121  3e-26  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.735503  normal 
 
 
-
 
NC_010525  Tneu_1007  extracellular solute-binding protein  27.6 
 
 
485 aa  121  3e-26  Thermoproteus neutrophilus V24Sta  Archaea  normal  0.256846  decreased coverage  0.000168852 
 
 
-
 
NC_009667  Oant_1463  extracellular solute-binding protein  31.85 
 
 
326 aa  120  4.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.512158  n/a   
 
 
-
 
NC_008698  Tpen_1485  extracellular solute-binding protein  25.83 
 
 
470 aa  119  9.999999999999999e-26  Thermofilum pendens Hrk 5  Archaea  normal  0.0472403  n/a   
 
 
-
 
NC_011769  DvMF_1586  extracellular solute-binding protein family 1  29.04 
 
 
333 aa  118  1.9999999999999998e-25  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007643  Rru_A3199  extracellular solute-binding protein  32.56 
 
 
338 aa  115  2.0000000000000002e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.680045  n/a   
 
 
-
 
NC_009636  Smed_1948  extracellular solute-binding protein  33.45 
 
 
326 aa  112  1.0000000000000001e-23  Sinorhizobium medicae WSM419  Bacteria  normal  0.113804  normal  0.383853 
 
 
-
 
NC_009635  Maeo_0333  extracellular solute-binding protein  28.14 
 
 
344 aa  111  2.0000000000000002e-23  Methanococcus aeolicus Nankai-3  Archaea  normal  0.853179  n/a   
 
 
-
 
NC_008698  Tpen_1808  extracellular solute-binding protein  25.95 
 
 
514 aa  108  3e-22  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_006274  BCZK1563  ABC transporter, substrate-binding protein  27.92 
 
 
341 aa  105  1e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1753  putative ABC transporter, substrate-binding protein  28.27 
 
 
341 aa  105  1e-21  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1611  extracellular solute-binding protein  28.96 
 
 
341 aa  105  2e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.257155  n/a   
 
 
-
 
NC_003909  BCE_1812  ABC transporter, substrate-binding protein, putative  27.92 
 
 
341 aa  104  3e-21  Bacillus cereus ATCC 10987  Bacteria  normal  0.98446  n/a   
 
 
-
 
NC_011658  BCAH187_A1866  putative ABC transporter, substrate-binding protein  27.92 
 
 
341 aa  104  3e-21  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3590  putative ABC transporter, substrate-binding protein  27.92 
 
 
341 aa  104  4e-21  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3281  extracellular solute-binding protein  26.44 
 
 
343 aa  103  5e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009073  Pcal_0248  extracellular solute-binding protein  27.81 
 
 
511 aa  103  6e-21  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.370696 
 
 
-
 
NC_012857  Rpic12D_4607  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.58 
 
 
341 aa  103  7e-21  Ralstonia pickettii 12D  Bacteria  normal  0.980284  normal 
 
 
-
 
NC_010678  Rpic_4473  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  29.58 
 
 
341 aa  103  7e-21  Ralstonia pickettii 12J  Bacteria  normal  normal  0.144148 
 
 
-
 
NC_009637  MmarC7_1107  extracellular solute-binding protein  29.92 
 
 
343 aa  103  8e-21  Methanococcus maripaludis C7  Archaea  normal  0.695758  normal 
 
 
-
 
NC_008686  Pden_1078  extracellular solute-binding protein  31.8 
 
 
322 aa  101  3e-20  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4877  extracellular solute-binding protein  28.47 
 
 
340 aa  100  4e-20  Sinorhizobium medicae WSM419  Bacteria  normal  0.713524  normal  0.38801 
 
 
-
 
NC_009135  MmarC5_1570  extracellular solute-binding protein  29.34 
 
 
350 aa  100  5e-20  Methanococcus maripaludis C5  Archaea  normal  0.840173  n/a   
 
 
-
 
NC_005957  BT9727_1572  ABC transporter, substrate-binding protein  28.87 
 
 
341 aa  100  6e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1611  ABC transporter substrate-binding protein  28.87 
 
 
341 aa  100  7e-20  Bacillus anthracis str. Sterne  Bacteria  normal  0.791321  n/a   
 
 
-
 
NC_011773  BCAH820_1786  putative ABC transporter, substrate-binding protein  28.87 
 
 
341 aa  100  7e-20  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_1735  ABC transporter substrate-binding protein  28.87 
 
 
341 aa  100  7e-20  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.313912  n/a   
 
 
-
 
NC_012880  Dd703_3231  extracellular solute-binding protein family 1  28.75 
 
 
325 aa  100  7e-20  Dickeya dadantii Ech703  Bacteria  normal  0.416701  n/a   
 
 
-
 
NC_011369  Rleg2_2481  extracellular solute-binding protein family 1  30 
 
 
330 aa  99.8  8e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.37214  normal  0.635435 
 
 
-
 
NC_010002  Daci_1282  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  26.07 
 
 
347 aa  99.8  9e-20  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2736  extracellular solute-binding protein family 1  29.45 
 
 
325 aa  98.2  3e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.288744  normal 
 
 
-
 
NC_008044  TM1040_0544  extracellular solute-binding protein  30.56 
 
 
322 aa  97.1  6e-19  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1545  extracellular solute-binding protein family 1  26.09 
 
 
339 aa  96.7  7e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.061269  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1237  extracellular metal-binding protein  26.25 
 
 
358 aa  96.7  8e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000766  ABC transporter, periplasmic substrate-binding protein  25.35 
 
 
336 aa  96.3  9e-19  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1436  iron compound ABC transporter, iron compound-binding protein, putative  26.25 
 
 
346 aa  95.9  1e-18  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1235  iron compound ABC transporter iron compound-binding protein  26.25 
 
 
358 aa  95.9  1e-18  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1212  iron ABC transporter solute-binding protein  26.25 
 
 
358 aa  95.9  1e-18  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1411  putative iron compound ABC transporter, iron compound-binding protein  26.25 
 
 
358 aa  95.9  1e-18  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK1214  iron ABC transporter solute-binding protein  26.25 
 
 
358 aa  95.9  1e-18  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1337  iron compound ABC transporter iron compound-binding protein  26.25 
 
 
358 aa  95.9  1e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2833  extracellular solute-binding protein  29.21 
 
 
320 aa  95.1  2e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.235826  n/a   
 
 
-
 
NC_011772  BCG9842_B3970  putative iron compound ABC transporter, iron compound-binding protein  26.25 
 
 
358 aa  95.5  2e-18  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0545  ABC transporter, periplasmic substrate-binding protein  24.83 
 
 
339 aa  95.1  2e-18  Vibrio cholerae O395  Bacteria  hitchhiker  0.001131  n/a   
 
 
-
 
NC_009784  VIBHAR_04877  ABC-type Fe3+ transport system periplasmic component  25.35 
 
 
336 aa  94  4e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_0120  extracellular solute-binding protein  28.03 
 
 
340 aa  94  4e-18  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2899  extracellular solute-binding protein  26.58 
 
 
345 aa  94.4  4e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  decreased coverage  0.00994055 
 
 
-
 
NC_011658  BCAH187_A1476  putative iron compound ABC transporter, iron compound-binding protein  25.91 
 
 
358 aa  94  5e-18  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2917  extracellular solute-binding protein family 1  26.07 
 
 
339 aa  92.8  1e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1374  putative iron compound ABC transporter, iron compound-binding protein  25.91 
 
 
358 aa  92.4  1e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5525  extracellular solute-binding protein  26.98 
 
 
340 aa  91.7  2e-17  Ralstonia eutropha JMP134  Bacteria  normal  0.655164  n/a   
 
 
-
 
NC_011313  VSAL_II0811  extracellular solute-binding protein  25.26 
 
 
351 aa  92  2e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_04090  ABC-type Fe3+ transport system, periplasmic component  28.31 
 
 
367 aa  91.7  3e-17  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.510256 
 
 
-
 
NC_009674  Bcer98_1048  extracellular solute-binding protein  25.91 
 
 
356 aa  91.7  3e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1097  extracellular solute-binding protein family 1  27.24 
 
 
337 aa  90.5  6e-17  Variovorax paradoxus S110  Bacteria  normal  0.0890714  n/a   
 
 
-
 
NC_014212  Mesil_1991  extracellular solute-binding protein family 1  26.25 
 
 
342 aa  90.1  8e-17  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000248153  normal 
 
 
-
 
NC_008709  Ping_2746  ABC transporter periplasmic substrate-binding protein  25.09 
 
 
335 aa  90.1  8e-17  Psychromonas ingrahamii 37  Bacteria  normal  0.553799  normal 
 
 
-
 
NC_008786  Veis_0970  extracellular solute-binding protein  23.79 
 
 
340 aa  88.6  2e-16  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00000273849  normal 
 
 
-
 
NC_007348  Reut_B5874  extracellular solute-binding protein  26.06 
 
 
341 aa  86.7  8e-16  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0051  extracellular solute-binding protein family 1  25.32 
 
 
378 aa  86.7  8e-16  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.115612  n/a   
 
 
-
 
NC_002967  TDE0386  ABC transporter, periplasmic substrate-binding protein  26.82 
 
 
338 aa  86.7  9e-16  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.00000551212  n/a   
 
 
-
 
NC_010508  Bcenmc03_3159  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  25.19 
 
 
351 aa  86.3  9e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.451295  normal  0.0280644 
 
 
-
 
NC_012852  Rleg_6060  extracellular solute-binding protein family 1  26.76 
 
 
340 aa  85.1  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1201  extracellular solute-binding protein family 1  28.21 
 
 
320 aa  84.7  0.000000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.941139  normal  0.523727 
 
 
-
 
NC_009073  Pcal_0214  ABC transporter periplasmic-binding protein  29.78 
 
 
337 aa  83.6  0.000000000000006  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  0.308816 
 
 
-
 
NC_008346  Swol_2479  ABC transporter, periplasmic substrate-binding protein  24.38 
 
 
347 aa  83.6  0.000000000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6494  ABC Fe3+ siderophore transporter, periplasmic ligand binding protein  24.42 
 
 
351 aa  82.4  0.00000000000001  Burkholderia sp. 383  Bacteria  decreased coverage  0.000128013  normal  0.750448 
 
 
-
 
NC_010084  Bmul_3135  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  24.42 
 
 
351 aa  80.9  0.00000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.0000124491 
 
 
-
 
NC_009436  Ent638_0833  extracellular solute-binding protein  30.05 
 
 
343 aa  80.9  0.00000000000004  Enterobacter sp. 638  Bacteria  normal  normal  0.752683 
 
 
-
 
NC_012917  PC1_1221  extracellular solute-binding protein family 1  24.57 
 
 
326 aa  80.1  0.00000000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.141693  n/a   
 
 
-
 
NC_002947  PP_5135  ABC transporter, periplasmic binding protein  24.38 
 
 
341 aa  79.3  0.0000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.659918  normal 
 
 
-
 
NC_010501  PputW619_0330  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  24.16 
 
 
341 aa  79.3  0.0000000000001  Pseudomonas putida W619  Bacteria  normal  normal  0.631264 
 
 
-
 
NC_008701  Pisl_1958  ABC transporter periplasmic-binding protein  27.09 
 
 
338 aa  78.6  0.0000000000002  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.0213047  hitchhiker  1.86869e-16 
 
 
-
 
NC_004311  BRA0720  ABC transporter, periplasmic substrate-binding protein  24.83 
 
 
341 aa  79  0.0000000000002  Brucella suis 1330  Bacteria  normal  0.631762  n/a   
 
 
-
 
NC_009504  BOV_A0676  ABC transporter, periplasmic substrate-binding protein  24.83 
 
 
341 aa  79  0.0000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5367  extracellular solute-binding protein  23.83 
 
 
341 aa  78.6  0.0000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008698  Tpen_1554  extracellular solute-binding protein  27.85 
 
 
354 aa  79  0.0000000000002  Thermofilum pendens Hrk 5  Archaea  normal  0.202841  n/a   
 
 
-
 
NC_009512  Pput_5008  extracellular solute-binding protein  24.53 
 
 
341 aa  78.2  0.0000000000003  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010525  Tneu_1089  ABC transporter periplasmic-binding protein  29 
 
 
338 aa  78.2  0.0000000000003  Thermoproteus neutrophilus V24Sta  Archaea  normal  0.167186  normal  0.0159055 
 
 
-
 
NC_009767  Rcas_3171  extracellular solute-binding protein  28.32 
 
 
382 aa  77  0.0000000000006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3115  extracellular solute-binding protein  25.93 
 
 
342 aa  77  0.0000000000006  Serratia proteamaculans 568  Bacteria  normal  0.0701659  normal 
 
 
-
 
NC_013205  Aaci_0041  extracellular solute-binding protein family 1  28.37 
 
 
336 aa  76.6  0.0000000000008  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0435  extracellular solute-binding protein, family 1  29.44 
 
 
343 aa  76.6  0.0000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6061  extracellular solute-binding protein family 1  25.74 
 
 
342 aa  75.9  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
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