| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0644 |
|---|
| Symbol | |
|---|
| ID | 5134362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 708730 |
|---|
| End bp | 710052 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640530966 |
|---|
| Product | putative phosphoglycerate transport regulatory protein PgtC |
|---|
| Protein accession | YP_001215483 |
|---|
| Protein GI | 147672123 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.788627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACGCAC AAAAACTAGG GATTTGCCTA ATGCCGCGAT GGATTTTTGC CTTTATTATG
CCCTGCCTCT TACTGAGTTT GGGCGTATCC ACTCAAGCTC AGGCTGCCGA GAGAGAGTTG
GTGATCCTCA CTACATTTTC ACGTGAGCCC TTACTGCCTT TGGTGGAGGA GTTCAGTCGC
CGTTATCAAG GCATTGAAGT GCAGATCATT CACCGCCGCG CGCAGTCGAG CGTGCAGCTG
CTCAACAAAA GCTATATTCA GAATATTGAT TTGGTGCTGA GTTCATCGCC ATATTTGATG
CAGAATTTGG CACAGAGCGG TAAGTTGGCC GCCTTACCAG AGCCGATGCA GACCCCAGAA
TGGTTGAAAC CTTACGCACT GCCGATGACC GAACATGTGG CGACGATCGG TTATTCAGGG
GCGGGATTAG TGTGGAATCA AGACTATCTC AAAACGCATC AATTGCCTGA GCCGAAGCAA
TTTAGCGATC TGGCGAAACC GGTCTATTTT GGGCATGTCA CCATGAGTAC ACCAGCACGC
TCTGGCACCA CGCAGATGAT GGTGGAAAGC ATACTGGCCA AATATGGCTG GCAAAAAGGA
TGGGAGATCT TGCTGCGCGT CGGTGCCAAT TTGGCGACGG CATCGGCCAG AAGTTTTGGC
GTGAGTGACT ATATCGCCAA TGGTCAGTTT GCGGTGGGCC CGACCATTGA CAGCTATGCC
CTGATCCTTG GTCGTAAACT CGACTACGTA CAGTTTGTTT ACGATGAAAG TTTTACCTTG
ATGCCGACGT ATGTTGCCCA AATTCGGCAA AATCACAACG ATCAGTACGC TAAAGCATTT
ATCGAACTTC TGATGTCCAG CGCTGTACAA ACTAACATGG AAGGCAACGA TTTTGCCAAA
CACAGCGTGC AAGATCAGTC TCTAGTCAAC GAGCGATTCA CCCGTTTGCC CATGGGCAGC
ATTATTCGCC GCGAAGAGTG CCTGAACGAT TTATTCGATT TGGCCATCAC CAAGCAACTG
CCGCAACTAA AAGATACGCT ACTTGCGGTA CTTGAAGCGA AGGCGCAGTT TGCACGTCGT
CCTTCTGTAT TGGCTAAAAT TGAGCAGATT GAACGCACGG TTTTTACCAT GCCGATTTCC
GAGCAAGAGG TTGATGCTTT AGCCATACAA ATCGCGCCAA ACTCGGCGCT GAGTGAAGAG
CAGCAAGCGG AATCTGCCAT GCTGCTTGCA GAAAAGGGGC ATGAATGGCA AATGCGTTTG
GAAAAACAGC TTGAGCAAGC TAACCAAGAA TTGAAAATCT TGCTGGCTGA GGAAGCGCAA
TGA
|
|---|
| Protein sequence | MNAQKLGICL MPRWIFAFIM PCLLLSLGVS TQAQAAEREL VILTTFSREP LLPLVEEFSR
RYQGIEVQII HRRAQSSVQL LNKSYIQNID LVLSSSPYLM QNLAQSGKLA ALPEPMQTPE
WLKPYALPMT EHVATIGYSG AGLVWNQDYL KTHQLPEPKQ FSDLAKPVYF GHVTMSTPAR
SGTTQMMVES ILAKYGWQKG WEILLRVGAN LATASARSFG VSDYIANGQF AVGPTIDSYA
LILGRKLDYV QFVYDESFTL MPTYVAQIRQ NHNDQYAKAF IELLMSSAVQ TNMEGNDFAK
HSVQDQSLVN ERFTRLPMGS IIRREECLND LFDLAITKQL PQLKDTLLAV LEAKAQFARR
PSVLAKIEQI ERTVFTMPIS EQEVDALAIQ IAPNSALSEE QQAESAMLLA EKGHEWQMRL
EKQLEQANQE LKILLAEEAQ
|
|---|
| |