More than 300 homologs were found in PanDaTox collection
for query gene Pden_2354 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  100 
 
 		 236 aa  476  1e-133  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal  1 
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  61.64 
 
 		 235 aa  274  1.0000000000000001e-72  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  60.73 
 
 		 235 aa  269  2e-71  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1932  two component LuxR family transcriptional regulator  60.73 
 
 		 236 aa  270  2e-71  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  41.04 
 
 		 229 aa  188  5.999999999999999e-47  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_2882  two component LuxR family transcriptional regulator  45.77 
 
 		 226 aa  166  2.9999999999999998e-40  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.533901  n/a   
 
 
-
 
NC_009049  Rsph17029_1528  two component LuxR family transcriptional regulator  45.77 
 
 		 226 aa  166  4e-40  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0620794 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  41.47 
 
 		 239 aa  163  3e-39  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  42.79 
 
 		 216 aa  159  4e-38  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  42.72 
 
 		 216 aa  157  1e-37  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009952  Dshi_2674  two component transcriptional regulator  42.23 
 
 		 228 aa  157  1e-37  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00219271  normal  1 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  42.72 
 
 		 216 aa  157  1e-37  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  42.79 
 
 		 216 aa  156  3e-37  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  45.37 
 
 		 215 aa  154  1e-36  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  38.65 
 
 		 209 aa  152  2.9999999999999998e-36  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009428  Rsph17025_1138  two component LuxR family transcriptional regulator  44.78 
 
 		 226 aa  152  4e-36  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.914207  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  44.02 
 
 		 215 aa  152  5.9999999999999996e-36  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  41.15 
 
 		 216 aa  151  8e-36  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  43.41 
 
 		 217 aa  150  1e-35  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  43.41 
 
 		 217 aa  150  1e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  39.13 
 
 		 211 aa  150  1e-35  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  40.1 
 
 		 209 aa  149  3e-35  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  39.05 
 
 		 252 aa  148  7e-35  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  40.69 
 
 		 215 aa  145  5e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  41.15 
 
 		 215 aa  144  9e-34  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  39.13 
 
 		 209 aa  142  6e-33  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  37.81 
 
 		 215 aa  140  9.999999999999999e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  34.74 
 
 		 220 aa  140  1.9999999999999998e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  38.73 
 
 		 219 aa  135  4e-31  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  39.6 
 
 		 219 aa  135  4e-31  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  37.31 
 
 		 215 aa  135  6.0000000000000005e-31  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  37.02 
 
 		 221 aa  135  6.0000000000000005e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  36.54 
 
 		 221 aa  135  7.000000000000001e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  35.1 
 
 		 211 aa  133  1.9999999999999998e-30  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  37.62 
 
 		 219 aa  134  1.9999999999999998e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.93 
 
 		 241 aa  132  3.9999999999999996e-30  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  36.63 
 
 		 220 aa  132  3.9999999999999996e-30  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  35.58 
 
 		 224 aa  132  5e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  38.12 
 
 		 219 aa  132  6.999999999999999e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  33.83 
 
 		 213 aa  132  6.999999999999999e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  38.39 
 
 		 216 aa  130  2.0000000000000002e-29  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal  1 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  36.36 
 
 		 224 aa  129  3e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  36.49 
 
 		 218 aa  129  3e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011369  Rleg2_0190  two component transcriptional regulator, LuxR family  37.81 
 
 		 215 aa  129  3e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  37.62 
 
 		 220 aa  128  7.000000000000001e-29  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  34.78 
 
 		 224 aa  128  9.000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  37.44 
 
 		 220 aa  128  9.000000000000001e-29  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  32.24 
 
 		 221 aa  128  9.000000000000001e-29  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  37.62 
 
 		 220 aa  127  1.0000000000000001e-28  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  37.62 
 
 		 220 aa  128  1.0000000000000001e-28  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  37.62 
 
 		 220 aa  127  1.0000000000000001e-28  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  37.44 
 
 		 220 aa  127  1.0000000000000001e-28  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  37.56 
 
 		 220 aa  127  2.0000000000000002e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  33.97 
 
 		 212 aa  126  2.0000000000000002e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  37.62 
 
 		 220 aa  127  2.0000000000000002e-28  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  36.14 
 
 		 238 aa  126  2.0000000000000002e-28  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  38.03 
 
 		 219 aa  126  3e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  35.55 
 
 		 219 aa  126  4.0000000000000003e-28  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  30.67 
 
 		 251 aa  125  4.0000000000000003e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  31.68 
 
 		 251 aa  125  4.0000000000000003e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  33.82 
 
 		 225 aa  125  5e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_012850  Rleg_0219  two component transcriptional regulator, LuxR family  37.81 
 
 		 215 aa  125  6e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.463895 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  35.98 
 
 		 222 aa  125  6e-28  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  35.92 
 
 		 210 aa  125  6e-28  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  37.5 
 
 		 223 aa  125  6e-28  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  35.92 
 
 		 210 aa  125  8.000000000000001e-28  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  34.3 
 
 		 224 aa  124  9e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  34.3 
 
 		 221 aa  123  2e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  33.17 
 
 		 219 aa  124  2e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  34.91 
 
 		 214 aa  123  2e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_011757  Mchl_4590  two component transcriptional regulator, LuxR family  33.04 
 
 		 244 aa  122  4e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.590508  normal  0.147521 
 
 
-
 
NC_010172  Mext_4220  response regulator receiver  33.04 
 
 		 244 aa  122  4e-27  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.89842 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  36.67 
 
 		 217 aa  122  5e-27  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  34.15 
 
 		 209 aa  122  5e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  33.33 
 
 		 223 aa  122  5e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  37.13 
 
 		 220 aa  122  6e-27  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  34.62 
 
 		 223 aa  120  1.9999999999999998e-26  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  34.62 
 
 		 223 aa  119  3e-26  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  34.62 
 
 		 223 aa  120  3e-26  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008228  Patl_1870  two component LuxR family transcriptional regulator  28.08 
 
 		 218 aa  119  4.9999999999999996e-26  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  34.95 
 
 		 216 aa  119  4.9999999999999996e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  37.56 
 
 		 231 aa  119  6e-26  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1932  DNA-binding response regulator  29.41 
 
 		 219 aa  117  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  decreased coverage  0.00601791  n/a   
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  35.38 
 
 		 222 aa  116  3e-25  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  36.89 
 
 		 214 aa  115  6.9999999999999995e-25  Acidovorax sp. JS42  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  36.89 
 
 		 214 aa  115  6.9999999999999995e-25  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  33.66 
 
 		 209 aa  114  8.999999999999998e-25  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_008709  Ping_2536  two component transcriptional regulator, LuxR family protein  33 
 
 		 216 aa  113  2.0000000000000002e-24  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  33.8 
 
 		 212 aa  113  3e-24  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  35.07 
 
 		 214 aa  113  3e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_009505  BOV_0331  LuxR family DNA-binding response regulator  34.98 
 
 		 213 aa  113  3e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.338839  n/a   
 
 
-
 
NC_010002  Daci_2921  two component LuxR family transcriptional regulator  37.86 
 
 		 229 aa  113  3e-24  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.190475 
 
 
-
 
NC_008254  Meso_0091  two component LuxR family transcriptional regulator  39.41 
 
 		 218 aa  112  4.0000000000000004e-24  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0315  LuxR family DNA-binding response regulator  34.3 
 
 		 213 aa  112  5e-24  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  32.74 
 
 		 222 aa  112  5e-24  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  32.38 
 
 		 216 aa  111  1.0000000000000001e-23  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  33.97 
 
 		 204 aa  110  1.0000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  34.26 
 
 		 219 aa  110  1.0000000000000001e-23  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  32.23 
 
 		 221 aa  110  2.0000000000000002e-23  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  32.41 
 
 		 221 aa  110  2.0000000000000002e-23  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
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