More than 300 homologs were found in PanDaTox collection
for query gene Gbro_1556 on replicon NC_013441
Organism: Gordonia bronchialis DSM 43247



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_1556  binding-protein-dependent transport systems inner membrane component  100 
 
 
214 aa  403  1.0000000000000001e-112  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5181  binding-protein-dependent transport systems inner membrane component  53.52 
 
 
215 aa  224  1e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_4152  binding-protein-dependent transport systems inner membrane component  62.91 
 
 
214 aa  218  5e-56  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1636  binding-protein-dependent transport systems inner membrane component  49.52 
 
 
242 aa  193  1e-48  Salinispora tropica CNB-440  Bacteria  normal  normal  0.537762 
 
 
-
 
NC_009953  Sare_1623  binding-protein-dependent transport systems inner membrane component  49.04 
 
 
242 aa  193  2e-48  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.733782 
 
 
-
 
NC_009077  Mjls_2529  binding-protein-dependent transport systems inner membrane component  52.83 
 
 
217 aa  190  1e-47  Mycobacterium sp. JLS  Bacteria  normal  normal  0.194108 
 
 
-
 
NC_008146  Mmcs_2492  binding-protein-dependent transport systems inner membrane component  52.36 
 
 
217 aa  188  5e-47  Mycobacterium sp. MCS  Bacteria  normal  0.33067  n/a   
 
 
-
 
NC_008705  Mkms_2537  binding-protein-dependent transport systems inner membrane component  52.36 
 
 
217 aa  188  5e-47  Mycobacterium sp. KMS  Bacteria  normal  0.043837  normal  0.575038 
 
 
-
 
NC_009338  Mflv_3108  binding-protein-dependent transport systems inner membrane component  53.77 
 
 
215 aa  186  2e-46  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.915347 
 
 
-
 
NC_013159  Svir_00630  ABC-type proline/glycine betaine transport system, permease component  45.54 
 
 
215 aa  181  7e-45  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0471054  normal 
 
 
-
 
NC_013093  Amir_2052  binding-protein-dependent transport systems inner membrane component  43.66 
 
 
216 aa  159  2e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_15750  ABC-type proline/glycine betaine transport system, permease component  49.28 
 
 
213 aa  157  2e-37  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2357  amino acid ABC transporter, permease protein  31.9 
 
 
211 aa  125  3e-28  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0770  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
222 aa  125  4.0000000000000003e-28  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1202  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
212 aa  119  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0317  binding-protein-dependent transport systems inner membrane component  36.67 
 
 
519 aa  119  3e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.417886 
 
 
-
 
NC_009632  SaurJH1_2522  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
211 aa  118  7.999999999999999e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.241712  n/a   
 
 
-
 
NC_009487  SaurJH9_2474  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
211 aa  118  7.999999999999999e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.13842  n/a   
 
 
-
 
NC_002976  SERP2030  amino acid ABC transporter, permease protein  29.19 
 
 
211 aa  114  1.0000000000000001e-24  Staphylococcus epidermidis RP62A  Bacteria  normal  0.207242  n/a   
 
 
-
 
NC_004116  SAG0243  amino acid ABC transporter, permease protein  32 
 
 
211 aa  114  1.0000000000000001e-24  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4757  binding-protein-dependent transport systems inner membrane component  35.79 
 
 
228 aa  113  2.0000000000000002e-24  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_013037  Dfer_1250  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
525 aa  112  3e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.615651  normal  0.522042 
 
 
-
 
NC_010117  COXBURSA331_A0267  quaternary amine ABC transporter periplasmic substrate-binding protein  37.84 
 
 
526 aa  111  7.000000000000001e-24  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0118  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
216 aa  111  1.0000000000000001e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4725  binding-protein-dependent transport systems inner membrane component  38.35 
 
 
229 aa  110  1.0000000000000001e-23  Salinispora arenicola CNS-205  Bacteria  normal  0.949447  hitchhiker  0.000140912 
 
 
-
 
NC_009632  SaurJH1_0763  substrate-binding region of ABC-type glycine betaine transport system  36.46 
 
 
504 aa  110  2.0000000000000002e-23  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.458546  n/a   
 
 
-
 
NC_009487  SaurJH9_0746  substrate-binding region of ABC-type glycine betaine transport system  36.46 
 
 
504 aa  110  2.0000000000000002e-23  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0386  ABC transporter, permease protein  37.5 
 
 
504 aa  109  4.0000000000000004e-23  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1923  glycine betaine transport system permease protein  35.75 
 
 
526 aa  108  6e-23  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4290  binding-protein-dependent transport systems inner membrane component  39.81 
 
 
229 aa  108  7.000000000000001e-23  Salinispora tropica CNB-440  Bacteria  normal  0.918168  normal  0.593562 
 
 
-
 
NC_009832  Spro_1446  binding-protein-dependent transport systems inner membrane component  33.83 
 
 
386 aa  107  2e-22  Serratia proteamaculans 568  Bacteria  normal  0.706116  normal 
 
 
-
 
NC_013411  GYMC61_1174  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
209 aa  106  2e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_0352  binding-protein-dependent transport systems inner membrane component  33.83 
 
 
212 aa  106  3e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00133912  n/a   
 
 
-
 
NC_013132  Cpin_4963  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
522 aa  104  9e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0875398  normal  0.252786 
 
 
-
 
NC_009621  Smed_5106  binding-protein-dependent transport systems inner membrane component  29.68 
 
 
220 aa  104  1e-21  Sinorhizobium medicae WSM419  Bacteria  normal  0.485727  normal  0.10095 
 
 
-
 
NC_010465  YPK_2864  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
384 aa  104  1e-21  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2785  quaternary amine ABC transporter permease  32.32 
 
 
384 aa  103  1e-21  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1330  quaternary amine ABC transporter permease  32.32 
 
 
384 aa  104  1e-21  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0296  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
211 aa  103  2e-21  Geobacillus sp. WCH70  Bacteria  normal  0.4946  n/a   
 
 
-
 
NC_011830  Dhaf_2803  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
218 aa  103  2e-21  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000135531  n/a   
 
 
-
 
NC_007347  Reut_A2494  binding-protein dependent transport system inner membrane protein  33.03 
 
 
216 aa  102  4e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1156  binding-protein-dependent transport systems inner membrane component  35 
 
 
207 aa  102  4e-21  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0984  binding-protein-dependent transport systems inner membrane component  36.78 
 
 
236 aa  102  5e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.660466  n/a   
 
 
-
 
NC_011094  SeSA_A1596  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
236 aa  101  7e-21  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.82645  normal  0.733145 
 
 
-
 
NC_011149  SeAg_B1678  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
236 aa  101  7e-21  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.122529  n/a   
 
 
-
 
NC_011080  SNSL254_A1605  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
236 aa  101  7e-21  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1845  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
236 aa  101  7e-21  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.309897  normal 
 
 
-
 
NC_011083  SeHA_C1664  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
236 aa  101  7e-21  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0578  binding-protein-dependent transport systems inner membrane component  36.78 
 
 
235 aa  101  8e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0139749  n/a   
 
 
-
 
NC_013223  Dret_0769  binding-protein-dependent transport systems inner membrane component  38 
 
 
245 aa  101  9e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2979  binding-protein-dependent transport systems inner membrane component  38.31 
 
 
210 aa  101  9e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2353  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
220 aa  100  2e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1924  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
245 aa  100  2e-20  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1125  binding-protein-dependent transport systems inner membrane component  35.43 
 
 
218 aa  99.8  3e-20  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_37590  ABC-type proline/glycine betaine transport system, permease component  37.5 
 
 
238 aa  99.8  3e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1127  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
216 aa  99.4  3e-20  Petrotoga mobilis SJ95  Bacteria  normal  0.721959  n/a   
 
 
-
 
NC_008527  LACR_0914  choline ABC transporter permease and substrate binding protein  31.58 
 
 
500 aa  99.8  3e-20  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.222381  n/a   
 
 
-
 
NC_004578  PSPTO_4576  glycine betaine/choline OpuC ABC transporter, permease protein  35.96 
 
 
217 aa  99  5e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.28564  n/a   
 
 
-
 
NC_007005  Psyr_4250  binding-protein dependent transport system inner membrane protein  35.96 
 
 
217 aa  99  5e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3264  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
243 aa  98.6  6e-20  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0145709 
 
 
-
 
NC_007963  Csal_2944  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
400 aa  98.2  8e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.543286  n/a   
 
 
-
 
NC_013517  Sterm_1515  Substrate-binding region of ABC-type glycine betaine transport system  30.3 
 
 
526 aa  97.8  1e-19  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0692577  n/a   
 
 
-
 
NC_004310  BR0222  ABC transporter, permease protein  36.55 
 
 
248 aa  97.4  2e-19  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7552  ABC glycinebetaine/carnitine/choline transporter, inner membrane subunit  32.73 
 
 
217 aa  96.7  2e-19  Burkholderia sp. 383  Bacteria  normal  normal  0.542589 
 
 
-
 
NC_010512  Bcenmc03_6583  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
217 aa  97.1  2e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0902932  normal  0.0101515 
 
 
-
 
NC_007973  Rmet_0801  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
216 aa  97.1  2e-19  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.435209 
 
 
-
 
NC_008062  Bcen_5737  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
217 aa  96.7  2e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0213  ABC transporter, permease protein  36.55 
 
 
248 aa  97.4  2e-19  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1017  ABC-type proline/glycine betaine transport systems, permease and substrate binding protein  38.18 
 
 
508 aa  96.7  2e-19  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  unclonable  0.00355742  n/a   
 
 
-
 
NC_008544  Bcen2424_6101  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
217 aa  96.7  2e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5138  binding-protein-dependent transport systems inner membrane component  37.79 
 
 
255 aa  96.3  3e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.316717  normal 
 
 
-
 
NC_008061  Bcen_3223  binding-protein-dependent transport systems inner membrane component  37.79 
 
 
255 aa  95.9  4e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.362528  n/a   
 
 
-
 
NC_008543  Bcen2424_5144  binding-protein-dependent transport systems inner membrane component  37.79 
 
 
255 aa  95.9  4e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0793163  normal 
 
 
-
 
NC_004116  SAG2130  amino acid ABC transporter, amino acid-binding protein/permease protein  36.71 
 
 
504 aa  95.1  6e-19  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0215  ABC transporter, permease protein  30.14 
 
 
386 aa  95.5  6e-19  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0843  ABC transporter, quaternary amine uptake (QAT) family, permease protein  33.83 
 
 
385 aa  95.5  6e-19  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_5735  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
238 aa  95.1  7e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.224143  n/a   
 
 
-
 
NC_008544  Bcen2424_6099  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
238 aa  95.1  7e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  0.840273  normal 
 
 
-
 
CP001509  ECD_02060  predicted transporter subunit: membrane component of ABC superfamily  33.83 
 
 
385 aa  95.1  8e-19  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2265  quaternary amine ABC transporter permease  33.83 
 
 
385 aa  95.1  8e-19  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02018  hypothetical protein  33.83 
 
 
385 aa  95.1  8e-19  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3510  binding-protein-dependent transport systems inner membrane component  37.21 
 
 
263 aa  95.1  8e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4640  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
246 aa  94.7  9e-19  Sinorhizobium medicae WSM419  Bacteria  normal  0.0951209  normal  0.118631 
 
 
-
 
NC_008530  LGAS_0705  ABC-type proline/glycine betaine transport system, permease and substrate binding protein  34.76 
 
 
516 aa  94.7  9e-19  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.000153769  normal 
 
 
-
 
NC_007511  Bcep18194_B0496  ABC proline/glycine betaine transporter, inner membrane subunit  37.21 
 
 
255 aa  94.7  1e-18  Burkholderia sp. 383  Bacteria  normal  0.792199  normal 
 
 
-
 
NC_009801  EcE24377A_2419  quaternary amine ABC transporter permease  33.33 
 
 
385 aa  94  2e-18  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0804  binding-protein dependent transport system inner membrane protein  33.17 
 
 
217 aa  93.2  2e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.141523  normal  0.643445 
 
 
-
 
NC_010512  Bcenmc03_6581  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
238 aa  94  2e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.191415  normal  0.0371863 
 
 
-
 
NC_011353  ECH74115_3255  ABC transporter, quaternary amine uptake (QAT) family, permease protein  33.33 
 
 
385 aa  93.6  2e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000687244 
 
 
-
 
NC_011898  Ccel_3333  Substrate-binding region of ABC-type glycine betaine transport system  37.24 
 
 
524 aa  93.6  2e-18  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000937167  n/a   
 
 
-
 
NC_008699  Noca_0453  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
235 aa  93.2  2e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1527  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
385 aa  93.2  3e-18  Escherichia coli DH1  Bacteria  normal  0.782089  n/a   
 
 
-
 
NC_010468  EcolC_1517  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
385 aa  92.8  3e-18  Escherichia coli ATCC 8739  Bacteria  normal  0.89368  normal 
 
 
-
 
NC_008786  Veis_2912  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
250 aa  92.8  3e-18  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.105441 
 
 
-
 
NC_010498  EcSMS35_0914  quaternary amine ABC transporter permease  33.33 
 
 
385 aa  92.8  3e-18  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.664933 
 
 
-
 
NC_011149  SeAg_B1680  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
215 aa  92.8  3e-18  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0615748  n/a   
 
 
-
 
NC_008148  Rxyl_0983  binding-protein-dependent transport systems inner membrane component  37.82 
 
 
217 aa  93.2  3e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.762927  n/a   
 
 
-
 
NC_012669  Bcav_2669  binding-protein-dependent transport systems inner membrane component  37.06 
 
 
234 aa  92.4  4e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.225849  normal  0.0541787 
 
 
-
 
NC_010552  BamMC406_5062  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
255 aa  92.8  4e-18  Burkholderia ambifaria MC40-6  Bacteria  normal  0.646466  normal 
 
 
-
 
NC_008786  Veis_2914  binding-protein-dependent transport systems inner membrane component  28.65 
 
 
220 aa  92.4  4e-18  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.208767 
 
 
-
 
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