Gene PSPTO_4576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4576 
Symbol 
ID1186259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5172818 
End bp5173471 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content61% 
IMG OID637395915 
Productglycine betaine/choline OpuC ABC transporter, permease protein 
Protein accessionNP_794327 
Protein GI28871708 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1174] ABC-type proline/glycine betaine transport systems, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.28564 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTCT TGAGCGCCTT CTCCCATCTG GACTGGGCAC AAGTCCTGCA ACTGACCTGG 
CAGCACATCA CGCTGGTCGG CATCGCGGTG ACCCTGGCCA TCGTCGTCGG TGTCCCGCTG
GGCGTGTTGA TGACCCGCTT TCCGGCGCTG GCCGGCCCGC TGCAAGCCAG CGCCACCGTG
CTGCTGACCG TGCCGTCCAT TGCGTTGTTC GGCCTGTTGC TGCCGTTCTA CTCAAAGTTC
GGTCAGGGCC TTGGCCCGAT GCCTGCCATC ACTGCAGTGT TTCTCTATTC GCTGCTGCCG
ATCATGCGTA ATACCTACCT GGCCCTGACT GGCGTCGAGC CGGGCATTCG TGAAGCCGCC
AAAGGCATTG GCATGACCTT CGGCCAACGC CTGCGCATGG TTGAACTGCC CATTGCCGTG
CCGGTCATTC TCGCCGGTGT GCGCACCGCC GTGGTGATGA ACATCGGTGT CATGACCATC
GCCGCGACCA TCGGTGCCGG TGGCCTGGGT GTACTTATTC TTGCTTCTAT CAGCCGCAGC
GATATGTCGA TGCTGATCGT CGGCGCGGTC CTGGTCAGTA TTCTGGCCAT CATCGCCGAC
CTGCTTCTGC AATGGCTGCA ACGCACGCTG ACTCCAAAAG GATTACTGAA ATGA
 
Protein sequence
MSFLSAFSHL DWAQVLQLTW QHITLVGIAV TLAIVVGVPL GVLMTRFPAL AGPLQASATV 
LLTVPSIALF GLLLPFYSKF GQGLGPMPAI TAVFLYSLLP IMRNTYLALT GVEPGIREAA
KGIGMTFGQR LRMVELPIAV PVILAGVRTA VVMNIGVMTI AATIGAGGLG VLILASISRS
DMSMLIVGAV LVSILAIIAD LLLQWLQRTL TPKGLLK