Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4576 |
Symbol | |
ID | 1186259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5172818 |
End bp | 5173471 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395915 |
Product | glycine betaine/choline OpuC ABC transporter, permease protein |
Protein accession | NP_794327 |
Protein GI | 28871708 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.28564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTCT TGAGCGCCTT CTCCCATCTG GACTGGGCAC AAGTCCTGCA ACTGACCTGG CAGCACATCA CGCTGGTCGG CATCGCGGTG ACCCTGGCCA TCGTCGTCGG TGTCCCGCTG GGCGTGTTGA TGACCCGCTT TCCGGCGCTG GCCGGCCCGC TGCAAGCCAG CGCCACCGTG CTGCTGACCG TGCCGTCCAT TGCGTTGTTC GGCCTGTTGC TGCCGTTCTA CTCAAAGTTC GGTCAGGGCC TTGGCCCGAT GCCTGCCATC ACTGCAGTGT TTCTCTATTC GCTGCTGCCG ATCATGCGTA ATACCTACCT GGCCCTGACT GGCGTCGAGC CGGGCATTCG TGAAGCCGCC AAAGGCATTG GCATGACCTT CGGCCAACGC CTGCGCATGG TTGAACTGCC CATTGCCGTG CCGGTCATTC TCGCCGGTGT GCGCACCGCC GTGGTGATGA ACATCGGTGT CATGACCATC GCCGCGACCA TCGGTGCCGG TGGCCTGGGT GTACTTATTC TTGCTTCTAT CAGCCGCAGC GATATGTCGA TGCTGATCGT CGGCGCGGTC CTGGTCAGTA TTCTGGCCAT CATCGCCGAC CTGCTTCTGC AATGGCTGCA ACGCACGCTG ACTCCAAAAG GATTACTGAA ATGA
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Protein sequence | MSFLSAFSHL DWAQVLQLTW QHITLVGIAV TLAIVVGVPL GVLMTRFPAL AGPLQASATV LLTVPSIALF GLLLPFYSKF GQGLGPMPAI TAVFLYSLLP IMRNTYLALT GVEPGIREAA KGIGMTFGQR LRMVELPIAV PVILAGVRTA VVMNIGVMTI AATIGAGGLG VLILASISRS DMSMLIVGAV LVSILAIIAD LLLQWLQRTL TPKGLLK
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