Gene Smed_5106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5106 
Symbol 
ID5319408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp53429 
End bp54091 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content61% 
IMG OID640776884 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001313816 
Protein GI150377221 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1174] ABC-type proline/glycine betaine transport systems, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.485727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.10095 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGATAA TCGGGTTCAT CATCGACAAT CTGCACATCA TCGGGGCGCG GACGATCGAG 
CATATTTCAA TCGTCTTCCT GGCGGTCGGC ATTGCGATCG CCACCGCCGT GCCGATCGGG
ATCGCCATCA CGCAATCGAA GAGCACGGCC GATACCATAC TCTATCTTGC GTCGATGATG
ATAACCGTTC CCTCGATTGC GTTGTTCGGC CTGATGATCC CGCTGCTTTC GCCGATCGGA
CACGGCATCG GTTATGTCCC GGCTGTCGTC GCCGTCATTC TCTATTCCCA GCTCCCCATC
ATCCGAAACA CCTATACCGC CATCACCAAT GTCGATCCGG CTCTTCGCGA GGCGGCCAAG
GGCATGGGAA TGAGCACCTG GCAGCGTCTG CGGCAGGTGG AGATCCCGCT CGCCATTCCG
GTCATCATGG CCGGGGTCAG GACTGCCGTC GTCATGAATA TCGGCGTAAC AGCCATTGCT
GCCTATATCG GCGCGGGCGG CCTCGGCACC TTCATCTCGC GCGGCATCAG CCAATCCGAT
CCGCGTCAGC TGGTGACCGG CGCACTTGCG GTCTCGCTGC TGGCGATCGC AGCCGACCTC
TTCCTCGCGC TCGTGCAGCG CCTTCTCACG TCACGCGGTA TTCAGGGGGA GGTCACGCCA
TGA
 
Protein sequence
MEIIGFIIDN LHIIGARTIE HISIVFLAVG IAIATAVPIG IAITQSKSTA DTILYLASMM 
ITVPSIALFG LMIPLLSPIG HGIGYVPAVV AVILYSQLPI IRNTYTAITN VDPALREAAK
GMGMSTWQRL RQVEIPLAIP VIMAGVRTAV VMNIGVTAIA AYIGAGGLGT FISRGISQSD
PRQLVTGALA VSLLAIAADL FLALVQRLLT SRGIQGEVTP