Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5106 |
Symbol | |
ID | 5319408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 53429 |
End bp | 54091 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640776884 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001313816 |
Protein GI | 150377221 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.485727 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.10095 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGATAA TCGGGTTCAT CATCGACAAT CTGCACATCA TCGGGGCGCG GACGATCGAG CATATTTCAA TCGTCTTCCT GGCGGTCGGC ATTGCGATCG CCACCGCCGT GCCGATCGGG ATCGCCATCA CGCAATCGAA GAGCACGGCC GATACCATAC TCTATCTTGC GTCGATGATG ATAACCGTTC CCTCGATTGC GTTGTTCGGC CTGATGATCC CGCTGCTTTC GCCGATCGGA CACGGCATCG GTTATGTCCC GGCTGTCGTC GCCGTCATTC TCTATTCCCA GCTCCCCATC ATCCGAAACA CCTATACCGC CATCACCAAT GTCGATCCGG CTCTTCGCGA GGCGGCCAAG GGCATGGGAA TGAGCACCTG GCAGCGTCTG CGGCAGGTGG AGATCCCGCT CGCCATTCCG GTCATCATGG CCGGGGTCAG GACTGCCGTC GTCATGAATA TCGGCGTAAC AGCCATTGCT GCCTATATCG GCGCGGGCGG CCTCGGCACC TTCATCTCGC GCGGCATCAG CCAATCCGAT CCGCGTCAGC TGGTGACCGG CGCACTTGCG GTCTCGCTGC TGGCGATCGC AGCCGACCTC TTCCTCGCGC TCGTGCAGCG CCTTCTCACG TCACGCGGTA TTCAGGGGGA GGTCACGCCA TGA
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Protein sequence | MEIIGFIIDN LHIIGARTIE HISIVFLAVG IAIATAVPIG IAITQSKSTA DTILYLASMM ITVPSIALFG LMIPLLSPIG HGIGYVPAVV AVILYSQLPI IRNTYTAITN VDPALREAAK GMGMSTWQRL RQVEIPLAIP VIMAGVRTAV VMNIGVTAIA AYIGAGGLGT FISRGISQSD PRQLVTGALA VSLLAIAADL FLALVQRLLT SRGIQGEVTP
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