More than 300 homologs were found in PanDaTox collection
for query gene Franean1_1695 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  100 
 
 
188 aa  346  1e-94  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  76 
 
 
202 aa  206  2e-52  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  57.93 
 
 
175 aa  146  2.0000000000000003e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  58.11 
 
 
169 aa  142  2e-33  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  58.11 
 
 
169 aa  142  2e-33  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  54.55 
 
 
151 aa  142  4e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  54.55 
 
 
163 aa  141  4e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  55.17 
 
 
175 aa  142  4e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.454353 
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  57.43 
 
 
169 aa  141  6e-33  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_014151  Cfla_1819  Holliday junction resolvase YqgF  57.82 
 
 
190 aa  138  4.999999999999999e-32  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0503115  normal 
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  57.53 
 
 
163 aa  137  6e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  55.26 
 
 
153 aa  136  2e-31  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  54.9 
 
 
153 aa  135  3.0000000000000003e-31  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_014165  Tbis_2046  Holliday junction resolvase YqgF  56.1 
 
 
163 aa  135  5e-31  Thermobispora bispora DSM 43833  Bacteria  normal  0.0425259  normal 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  59.44 
 
 
173 aa  132  1.9999999999999998e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  48.45 
 
 
199 aa  129  2.0000000000000002e-29  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  54.9 
 
 
156 aa  129  2.0000000000000002e-29  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_013235  Namu_3296  Holliday junction resolvase YqgF  52.17 
 
 
169 aa  128  6e-29  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000134676  normal  0.0641237 
 
 
-
 
NC_013093  Amir_5264  Holliday junction resolvase YqgF  54.86 
 
 
170 aa  128  6e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1690  Holliday junction resolvase YqgF  51.97 
 
 
184 aa  127  1.0000000000000001e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.480738  n/a   
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  50 
 
 
161 aa  123  2e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.459764 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  49.64 
 
 
222 aa  122  3e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  46.41 
 
 
207 aa  120  9e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_009565  TBFG_12575  Holliday junction resolvase-like protein  51.72 
 
 
170 aa  119  1.9999999999999998e-26  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00396279  normal  0.126571 
 
 
-
 
NC_013521  Sked_17700  conserved hypothetical protein TIGR00250  55.33 
 
 
167 aa  118  6e-26  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00726332  normal  0.269027 
 
 
-
 
NC_013159  Svir_15280  conserved hypothetical protein TIGR00250  52.48 
 
 
154 aa  117  7e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0307172  normal  0.652486 
 
 
-
 
NC_013174  Jden_1350  Holliday junction resolvase YqgF  45.34 
 
 
167 aa  117  9e-26  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2321  Holliday junction resolvase YqgF  50.35 
 
 
143 aa  115  5e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1976  Holliday junction resolvase YqgF  47.95 
 
 
161 aa  115  5e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.133397  n/a   
 
 
-
 
NC_013131  Caci_2379  Holliday junction resolvase-like protein  51.72 
 
 
171 aa  112  3e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  46.11 
 
 
181 aa  112  4.0000000000000004e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2136  Holliday junction resolvase YqgF  51.18 
 
 
152 aa  111  8.000000000000001e-24  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000271405  n/a   
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  49.64 
 
 
161 aa  105  3e-22  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  39.87 
 
 
152 aa  99.8  2e-20  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_009664  Krad_3031  Holliday junction resolvase YqgF  50.97 
 
 
188 aa  98.2  6e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  45.52 
 
 
140 aa  94  1e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_007333  Tfu_2069  Holliday junction resolvase-like protein  48.12 
 
 
159 aa  93.2  2e-18  Thermobifida fusca YX  Bacteria  normal  0.0705886  n/a   
 
 
-
 
NC_009513  Lreu_0535  Holliday junction resolvase-like protein  38.52 
 
 
147 aa  93.2  2e-18  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000331559  n/a   
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  35.95 
 
 
152 aa  92.8  2e-18  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  39.86 
 
 
144 aa  92.8  3e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_008531  LEUM_0558  Holliday junction resolvase-like protein  38.69 
 
 
143 aa  92  4e-18  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  43.06 
 
 
149 aa  90.5  1e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_2031  Holliday junction resolvase-like protein  37.31 
 
 
137 aa  89.7  2e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1748  Holliday junction resolvase-like protein  37.31 
 
 
137 aa  89.7  2e-17  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  44.85 
 
 
137 aa  88.6  5e-17  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_008528  OEOE_1165  RNase H-like ribonuclease  37.96 
 
 
144 aa  88.6  5e-17  Oenococcus oeni PSU-1  Bacteria  normal  0.345189  n/a   
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  35.71 
 
 
139 aa  88.2  7e-17  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  44.85 
 
 
137 aa  87.4  1e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  45.99 
 
 
137 aa  87  1e-16  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  38.3 
 
 
146 aa  86.3  3e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_008527  LACR_0138  Holliday junction resolvase-like protein  39.55 
 
 
143 aa  86.3  3e-16  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  39.57 
 
 
143 aa  85.9  3e-16  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  43.57 
 
 
158 aa  85.9  3e-16  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  37.24 
 
 
151 aa  85.5  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  36.43 
 
 
149 aa  85.5  4e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_008532  STER_1938  Holliday junction resolvase-like protein  37.96 
 
 
139 aa  85.1  5e-16  Streptococcus thermophilus LMD-9  Bacteria  unclonable  0.0000000471473  n/a   
 
 
-
 
NC_004116  SAG2090  Holliday junction resolvase-like protein  37.78 
 
 
136 aa  84.3  0.000000000000001  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.000724166  n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  34.33 
 
 
141 aa  84  0.000000000000001  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  42.03 
 
 
137 aa  83.6  0.000000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_009012  Cthe_0153  Holliday junction resolvase-like protein  35.29 
 
 
141 aa  84  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0185653  n/a   
 
 
-
 
NC_002976  SERP1180  Holliday junction resolvase-like protein  35.77 
 
 
142 aa  83.2  0.000000000000002  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  33.8 
 
 
146 aa  83.6  0.000000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  38.41 
 
 
151 aa  82.4  0.000000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  38.13 
 
 
160 aa  82.4  0.000000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  37.96 
 
 
141 aa  82  0.000000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  36.5 
 
 
139 aa  80.9  0.000000000000009  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  36.5 
 
 
139 aa  80.9  0.000000000000009  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011830  Dhaf_3562  Holliday junction resolvase-like protein  33.57 
 
 
142 aa  79.7  0.00000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000000000329746  n/a   
 
 
-
 
NC_011206  Lferr_2668  Holliday junction resolvase YqgF  38.35 
 
 
143 aa  79.7  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.933138  normal 
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  38.06 
 
 
157 aa  80.1  0.00000000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  37.96 
 
 
142 aa  80.1  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  39.13 
 
 
150 aa  80.1  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_011761  AFE_3061  hypothetical protein  38.35 
 
 
143 aa  79.7  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  35.34 
 
 
158 aa  79.7  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3099  Holliday junction resolvase-like protein  36.57 
 
 
137 aa  79.3  0.00000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00212776  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0474  Holliday junction resolvase YqgF  31.85 
 
 
145 aa  79.3  0.00000000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00800439  n/a   
 
 
-
 
NC_009632  SaurJH1_1707  Holliday junction resolvase-like protein  35.77 
 
 
142 aa  79  0.00000000000004  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.24342  n/a   
 
 
-
 
NC_009487  SaurJH9_1673  Holliday junction resolvase-like protein  35.77 
 
 
142 aa  79  0.00000000000004  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.514842  n/a   
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  39.13 
 
 
168 aa  79  0.00000000000004  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_011898  Ccel_2239  Holliday junction resolvase-like protein  32.59 
 
 
142 aa  79  0.00000000000004  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000140275  n/a   
 
 
-
 
NC_012793  GWCH70_2488  Holliday junction resolvase YqgF  33.58 
 
 
138 aa  78.6  0.00000000000005  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000680199  n/a   
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  36.69 
 
 
160 aa  78.6  0.00000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  41.55 
 
 
139 aa  78.2  0.00000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  40.29 
 
 
161 aa  78.2  0.00000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  33.33 
 
 
141 aa  77.8  0.00000000000008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  39.19 
 
 
160 aa  77.8  0.00000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  37.23 
 
 
150 aa  77.8  0.00000000000009  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  39.19 
 
 
160 aa  77.8  0.00000000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  38.06 
 
 
142 aa  77.4  0.0000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  37.5 
 
 
153 aa  77.4  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_010718  Nther_1778  Holliday junction resolvase YqgF  31.34 
 
 
141 aa  76.3  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.140554 
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  38.69 
 
 
160 aa  76.3  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal 
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  37.23 
 
 
158 aa  75.9  0.0000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  40.44 
 
 
163 aa  75.9  0.0000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  41.43 
 
 
163 aa  76.3  0.0000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  31.34 
 
 
137 aa  75.1  0.0000000000005  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  42.45 
 
 
170 aa  74.7  0.0000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  34.33 
 
 
137 aa  75.1  0.0000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_002950  PG2202  Holliday junction resolvase-like protein  38.03 
 
 
138 aa  74.3  0.0000000000009  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  38.3 
 
 
163 aa  74.3  0.0000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal 
 
 
-
 
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