145 homologs were found in PanDaTox collection
for query gene Dfer_0889 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_0889  putative transcriptional regulator, Crp/Fnr family  100 
 
 
217 aa  442  1e-123  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00205469  normal  0.913069 
 
 
-
 
NC_013037  Dfer_3750  putative transcriptional regulator, Crp/Fnr family  51.6 
 
 
201 aa  209  2e-53  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.44373  normal 
 
 
-
 
NC_013037  Dfer_2871  putative transcriptional regulator, Crp/Fnr family  30.38 
 
 
193 aa  82.8  0.000000000000004  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00453056  normal  0.032413 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  30.77 
 
 
189 aa  82.4  0.000000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  28 
 
 
187 aa  82.8  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  28.57 
 
 
196 aa  77.8  0.0000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  29.45 
 
 
190 aa  77  0.0000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  30.99 
 
 
201 aa  77  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  30.67 
 
 
193 aa  74.7  0.000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  32.16 
 
 
194 aa  73.9  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  28.21 
 
 
204 aa  71.6  0.000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_013730  Slin_2093  putative transcriptional regulator, Crp/Fnr family  28.24 
 
 
198 aa  71.6  0.000000000009  Spirosoma linguale DSM 74  Bacteria  normal  0.177732  normal  0.144661 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  29.88 
 
 
185 aa  70.5  0.00000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  30.72 
 
 
189 aa  70.5  0.00000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  30 
 
 
194 aa  68.9  0.00000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  29.23 
 
 
208 aa  68.2  0.00000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  24.52 
 
 
175 aa  67.4  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  25.45 
 
 
194 aa  67.8  0.0000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  23.66 
 
 
191 aa  67.8  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  29.19 
 
 
192 aa  67  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  28.3 
 
 
191 aa  67  0.0000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  29.11 
 
 
189 aa  66.6  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  29.61 
 
 
199 aa  65.9  0.0000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  24.71 
 
 
190 aa  65.9  0.0000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  24.53 
 
 
186 aa  65.9  0.0000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3294  cyclic nucleotide-binding protein  31.72 
 
 
187 aa  65.1  0.0000000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  26.92 
 
 
189 aa  65.1  0.0000000008  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  27.39 
 
 
191 aa  64.7  0.0000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  28.48 
 
 
208 aa  64.7  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  31.71 
 
 
192 aa  63.5  0.000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  25 
 
 
192 aa  63.5  0.000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013037  Dfer_1119  putative transcriptional regulator, Crp/Fnr family  25.15 
 
 
200 aa  63.9  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.301792  normal  0.283785 
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  26.9 
 
 
194 aa  63.5  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  31.49 
 
 
194 aa  63.5  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  25.14 
 
 
196 aa  63.2  0.000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_3164  cyclic nucleotide-binding protein  23.95 
 
 
199 aa  63.2  0.000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  27.75 
 
 
208 aa  63.2  0.000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  29.24 
 
 
198 aa  62.4  0.000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  24.38 
 
 
189 aa  62.4  0.000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  24.53 
 
 
194 aa  62.4  0.000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  27.59 
 
 
194 aa  62  0.000000007  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  26.83 
 
 
189 aa  60.8  0.00000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  27.78 
 
 
192 aa  61.2  0.00000001  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  24.71 
 
 
190 aa  60.8  0.00000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  27.55 
 
 
196 aa  60.1  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  26.51 
 
 
191 aa  59.7  0.00000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  26.74 
 
 
195 aa  60.1  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  24.42 
 
 
198 aa  59.3  0.00000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_013037  Dfer_0484  putative transcriptional regulator, Crp/Fnr family  25.7 
 
 
189 aa  59.3  0.00000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.46296  normal 
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  24.18 
 
 
188 aa  59.7  0.00000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2881  putative transcriptional regulator, Crp/Fnr family  24 
 
 
187 aa  59.3  0.00000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  25.49 
 
 
193 aa  58.9  0.00000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  24.85 
 
 
185 aa  58.5  0.00000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  25 
 
 
189 aa  58.5  0.00000007  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_013061  Phep_1779  cyclic nucleotide-binding  23.89 
 
 
192 aa  58.5  0.00000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.705859  normal  0.0224927 
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  23.72 
 
 
201 aa  58.5  0.00000008  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  26.58 
 
 
188 aa  58.5  0.00000008  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  30.41 
 
 
168 aa  57.8  0.0000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_009654  Mmwyl1_0503  cyclic nucleotide-binding protein  24.74 
 
 
197 aa  57.8  0.0000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  26.35 
 
 
196 aa  58.2  0.0000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  25.48 
 
 
190 aa  57.8  0.0000001  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_013061  Phep_3758  cyclic nucleotide-binding  29.44 
 
 
199 aa  57.8  0.0000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0935  cyclic nucleotide-binding protein  23.9 
 
 
166 aa  57  0.0000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0225021  n/a   
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  28.4 
 
 
189 aa  57  0.0000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  22.94 
 
 
194 aa  57  0.0000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  26.67 
 
 
187 aa  56.6  0.0000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  24.2 
 
 
192 aa  56.2  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  25.88 
 
 
192 aa  56.2  0.0000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  28.48 
 
 
192 aa  55.8  0.0000005  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  26.32 
 
 
189 aa  55.8  0.0000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_012803  Mlut_09560  cAMP-binding protein  29.57 
 
 
231 aa  55.5  0.0000006  Micrococcus luteus NCTC 2665  Bacteria  normal  0.348668  n/a   
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  26.63 
 
 
198 aa  55.5  0.0000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  28.96 
 
 
200 aa  55.1  0.0000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  23.39 
 
 
196 aa  55.1  0.0000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  28.96 
 
 
222 aa  54.7  0.000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3585  putative transcriptional regulator, Crp/Fnr family  26.97 
 
 
191 aa  54.7  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0241751 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  24.55 
 
 
202 aa  53.9  0.000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  25.68 
 
 
189 aa  53.9  0.000002  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  24.07 
 
 
193 aa  53.9  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  24.7 
 
 
191 aa  53.5  0.000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  27.78 
 
 
197 aa  52.4  0.000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013730  Slin_3259  putative transcriptional regulator, Crp/Fnr family  22.29 
 
 
194 aa  52  0.000006  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.948479 
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  24.39 
 
 
196 aa  52  0.000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_013132  Cpin_0260  putative transcriptional regulator, Crp/Fnr family  25.9 
 
 
216 aa  52  0.000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3150  Crp/FNR family transcriptional regulator  27.56 
 
 
252 aa  51.6  0.000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  30.67 
 
 
192 aa  51.6  0.000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  24.29 
 
 
193 aa  50.8  0.00001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  25.49 
 
 
191 aa  51.2  0.00001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  24.87 
 
 
239 aa  50.8  0.00001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013061  Phep_2769  cyclic nucleotide-binding  24.52 
 
 
192 aa  51.6  0.00001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.311339  normal 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  23.57 
 
 
191 aa  50.8  0.00002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  23.08 
 
 
187 aa  50.1  0.00002  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_009441  Fjoh_3814  cyclic nucleotide-binding protein  26.9 
 
 
195 aa  50.4  0.00002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  22.97 
 
 
194 aa  50.8  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3066  cyclic nucleotide-binding  26.77 
 
 
240 aa  49.7  0.00003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  26.97 
 
 
197 aa  49.7  0.00003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_013132  Cpin_6187  putative transcriptional regulator, Crp/Fnr family  25 
 
 
191 aa  49.3  0.00004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.138548 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  26.15 
 
 
223 aa  49.3  0.00004  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_013061  Phep_1652  hypothetical protein  28.74 
 
 
216 aa  49.3  0.00004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.177489 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  26.28 
 
 
175 aa  48.9  0.00006  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
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