More than 300 homologs were found in PanDaTox collection
for query gene Bfae_30020 on replicon NC_013172
Organism: Brachybacterium faecium DSM 4810



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013172  Bfae_30020  ABC-type proline/glycine betaine transport system, permease component  100 
 
 
223 aa  422  1e-117  Brachybacterium faecium DSM 4810  Bacteria  normal  0.115362  n/a   
 
 
-
 
NC_008541  Arth_2840  binding-protein-dependent transport systems inner membrane component  56.16 
 
 
248 aa  211  4.9999999999999996e-54  Arthrobacter sp. FB24  Bacteria  decreased coverage  0.00306406  n/a   
 
 
-
 
NC_011886  Achl_2555  binding-protein-dependent transport systems inner membrane component  56.42 
 
 
248 aa  206  3e-52  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000304534 
 
 
-
 
NC_013595  Sros_8179  proline/glycine betaine ABC transporter  47.42 
 
 
223 aa  175  5e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3634  binding-protein-dependent transport systems inner membrane component  43.95 
 
 
229 aa  171  5.999999999999999e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  0.737383  n/a   
 
 
-
 
NC_013174  Jden_2260  binding-protein-dependent transport systems inner membrane component  52.63 
 
 
227 aa  159  3e-38  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.360102 
 
 
-
 
NC_013169  Ksed_26240  ABC-type proline/glycine betaine transport system, permease component  47.22 
 
 
230 aa  157  8e-38  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.408698  normal  0.833764 
 
 
-
 
NC_013093  Amir_6269  binding-protein-dependent transport systems inner membrane component  53.19 
 
 
243 aa  154  8e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5345  binding-protein-dependent transport systems inner membrane component  48.02 
 
 
264 aa  154  1e-36  Mycobacterium sp. JLS  Bacteria  normal  0.214986  normal 
 
 
-
 
NC_008146  Mmcs_4964  binding-protein-dependent transport systems inner membrane component  48.02 
 
 
264 aa  154  1e-36  Mycobacterium sp. MCS  Bacteria  normal  0.517846  n/a   
 
 
-
 
NC_008705  Mkms_5052  binding-protein-dependent transport systems inner membrane component  48.02 
 
 
264 aa  154  1e-36  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13788  osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system permease protein proZ  49.53 
 
 
239 aa  151  7e-36  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.991425 
 
 
-
 
NC_009664  Krad_1292  binding-protein-dependent transport systems inner membrane component  46.82 
 
 
251 aa  147  1.0000000000000001e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4289  binding-protein-dependent transport systems inner membrane component  46.54 
 
 
244 aa  143  2e-33  Salinispora tropica CNB-440  Bacteria  normal  0.729168  normal  0.839045 
 
 
-
 
NC_011989  Avi_0503  ABC transporter  42.47 
 
 
225 aa  142  3e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0399  binding-protein-dependent transport systems inner membrane component  45.99 
 
 
225 aa  140  9.999999999999999e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5598  binding-protein-dependent transport systems inner membrane component  47.94 
 
 
264 aa  140  9.999999999999999e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1210  binding-protein-dependent transport systems inner membrane component  47.42 
 
 
257 aa  140  1.9999999999999998e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1404  binding-protein-dependent transport systems inner membrane component  47.47 
 
 
258 aa  137  1e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.848892 
 
 
-
 
NC_012669  Bcav_2670  binding-protein-dependent transport systems inner membrane component  42.92 
 
 
230 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.538253  normal  0.0824918 
 
 
-
 
NC_013421  Pecwa_4555  binding-protein-dependent transport systems inner membrane component  40.83 
 
 
226 aa  137  2e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4724  binding-protein-dependent transport systems inner membrane component  44.7 
 
 
244 aa  136  3.0000000000000003e-31  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000283909 
 
 
-
 
NC_013131  Caci_3085  binding-protein-dependent transport systems inner membrane component  40.09 
 
 
225 aa  133  3e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.416296  normal  0.12861 
 
 
-
 
NC_013521  Sked_37580  ABC-type proline/glycine betaine transport system, permease component  42.2 
 
 
228 aa  129  3e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3263  binding-protein-dependent transport systems inner membrane component  38.55 
 
 
229 aa  122  3e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0142604 
 
 
-
 
NC_009487  SaurJH9_2474  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
211 aa  120  1.9999999999999998e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.13842  n/a   
 
 
-
 
NC_009632  SaurJH1_2522  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
211 aa  120  1.9999999999999998e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.241712  n/a   
 
 
-
 
NC_002976  SERP2030  amino acid ABC transporter, permease protein  32.29 
 
 
211 aa  119  3e-26  Staphylococcus epidermidis RP62A  Bacteria  normal  0.207242  n/a   
 
 
-
 
NC_013947  Snas_1035  binding-protein-dependent transport systems inner membrane component  36.7 
 
 
236 aa  119  3e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.163683 
 
 
-
 
NC_014151  Cfla_1339  binding-protein-dependent transport systems inner membrane component  40.09 
 
 
255 aa  117  1.9999999999999998e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.889629  hitchhiker  0.000819014 
 
 
-
 
NC_002976  SERP2357  amino acid ABC transporter, permease protein  33.68 
 
 
211 aa  115  5e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0317  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
519 aa  115  5e-25  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.417886 
 
 
-
 
NC_010320  Teth514_1202  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
212 aa  113  3e-24  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3032  Substrate-binding region of ABC-type glycine betaine transport system  27.84 
 
 
531 aa  110  2.0000000000000002e-23  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.367999  n/a   
 
 
-
 
NC_013037  Dfer_1250  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
525 aa  108  9.000000000000001e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.615651  normal  0.522042 
 
 
-
 
NC_010001  Cphy_0119  substrate-binding region of ABC-type glycine betaine transport system  32.53 
 
 
523 aa  107  1e-22  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000124345  n/a   
 
 
-
 
NC_008254  Meso_2980  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
211 aa  107  1e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0624  binding-protein-dependent transport systems inner membrane component  44.15 
 
 
243 aa  107  2e-22  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3333  Substrate-binding region of ABC-type glycine betaine transport system  32.28 
 
 
524 aa  106  3e-22  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000937167  n/a   
 
 
-
 
NC_013457  VEA_001529  probable inner-membrane permease  33.84 
 
 
199 aa  105  6e-22  Vibrio sp. Ex25  Bacteria  normal  0.90895  n/a   
 
 
-
 
NC_013517  Sterm_1515  Substrate-binding region of ABC-type glycine betaine transport system  32.57 
 
 
526 aa  105  8e-22  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0692577  n/a   
 
 
-
 
NC_011830  Dhaf_2803  binding-protein-dependent transport systems inner membrane component  33.71 
 
 
218 aa  104  1e-21  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000135531  n/a   
 
 
-
 
NC_010003  Pmob_1127  binding-protein-dependent transport systems inner membrane component  30.23 
 
 
216 aa  103  3e-21  Petrotoga mobilis SJ95  Bacteria  normal  0.721959  n/a   
 
 
-
 
NC_009621  Smed_5106  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
220 aa  100  1e-20  Sinorhizobium medicae WSM419  Bacteria  normal  0.485727  normal  0.10095 
 
 
-
 
NC_010003  Pmob_1125  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
218 aa  101  1e-20  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0296  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
211 aa  100  2e-20  Geobacillus sp. WCH70  Bacteria  normal  0.4946  n/a   
 
 
-
 
NC_013411  GYMC61_1174  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
209 aa  100  3e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007963  Csal_2944  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
400 aa  99.8  3e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.543286  n/a   
 
 
-
 
NC_009523  RoseRS_1817  binding-protein-dependent transport systems inner membrane component  40.29 
 
 
217 aa  99  5e-20  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0299279 
 
 
-
 
NC_013204  Elen_0084  Substrate-binding region of ABC-type glycine betaine transport system  30.65 
 
 
528 aa  98.6  7e-20  Eggerthella lenta DSM 2243  Bacteria  normal  0.689632  normal 
 
 
-
 
NC_013223  Dret_0770  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
222 aa  97.4  1e-19  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1156  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
207 aa  97.4  1e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4963  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
522 aa  97.8  1e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0875398  normal  0.252786 
 
 
-
 
NC_004116  SAG0243  amino acid ABC transporter, permease protein  30.39 
 
 
211 aa  96.7  2e-19  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1636  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
242 aa  95.9  4e-19  Salinispora tropica CNB-440  Bacteria  normal  normal  0.537762 
 
 
-
 
NC_007963  Csal_2353  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
220 aa  94.7  9e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0349  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
217 aa  94.7  9e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000441273  n/a   
 
 
-
 
NC_012803  Mlut_15730  ABC-type proline/glycine betaine transport system, permease component  32.47 
 
 
251 aa  94.4  1e-18  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0386  ABC transporter, permease protein  31.72 
 
 
504 aa  93.6  2e-18  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2494  binding-protein dependent transport system inner membrane protein  34.43 
 
 
216 aa  93.6  2e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4755  binding-protein-dependent transport systems inner membrane component  29.14 
 
 
224 aa  93.6  2e-18  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_013530  Xcel_1079  binding-protein-dependent transport systems inner membrane component  44.29 
 
 
225 aa  94  2e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.663107  n/a   
 
 
-
 
NC_013159  Svir_00630  ABC-type proline/glycine betaine transport system, permease component  32.26 
 
 
215 aa  92.8  4e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0471054  normal 
 
 
-
 
NC_009953  Sare_1623  binding-protein-dependent transport systems inner membrane component  35.94 
 
 
242 aa  92.4  5e-18  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.733782 
 
 
-
 
NC_009727  CBUD_1923  glycine betaine transport system permease protein  30.39 
 
 
526 aa  92  6e-18  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2528  binding-protein-dependent transport systems inner membrane component  36.61 
 
 
217 aa  91.7  7e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00802547 
 
 
-
 
NC_007948  Bpro_1155  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
213 aa  91.7  7e-18  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0352  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
212 aa  91.3  1e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00133912  n/a   
 
 
-
 
NC_008786  Veis_2914  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
220 aa  90.5  2e-17  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.208767 
 
 
-
 
NC_009632  SaurJH1_0763  substrate-binding region of ABC-type glycine betaine transport system  31.72 
 
 
504 aa  89.4  4e-17  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.458546  n/a   
 
 
-
 
NC_009487  SaurJH9_0746  substrate-binding region of ABC-type glycine betaine transport system  31.72 
 
 
504 aa  89.4  4e-17  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0185  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
221 aa  89.4  5e-17  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1554  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
246 aa  89  6e-17  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0914  choline ABC transporter permease and substrate binding protein  27.72 
 
 
500 aa  89  6e-17  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.222381  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0267  quaternary amine ABC transporter periplasmic substrate-binding protein  29.83 
 
 
526 aa  88.6  7e-17  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0486  ABC proline/glycine betaine transporter, inner membrane subunit  27.89 
 
 
203 aa  87.8  1e-16  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.00597716  n/a   
 
 
-
 
NC_004116  SAG2130  amino acid ABC transporter, amino acid-binding protein/permease protein  31.43 
 
 
504 aa  87.4  2e-16  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1814  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
213 aa  87  2e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.518824  normal  0.0107204 
 
 
-
 
NC_008148  Rxyl_0983  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
217 aa  87.4  2e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.762927  n/a   
 
 
-
 
NC_009656  PSPA7_1216  ABC transporter permease  33.87 
 
 
220 aa  87  2e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2244  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
229 aa  86.7  3e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.259993  normal 
 
 
-
 
NC_009767  Rcas_2531  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
213 aa  86.3  4e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.41546  hitchhiker  0.00151664 
 
 
-
 
NC_007644  Moth_1686  binding-protein dependent transport system inner membrane protein  26.9 
 
 
207 aa  85.9  5e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.038351  normal  0.407571 
 
 
-
 
NC_014158  Tpau_4150  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
259 aa  85.5  5e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.950523  n/a   
 
 
-
 
NC_013745  Htur_4757  binding-protein-dependent transport systems inner membrane component  29.19 
 
 
228 aa  85.5  6e-16  Haloterrigena turkmenica DSM 5511  Archaea  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3264  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
243 aa  85.5  6e-16  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0145709 
 
 
-
 
NC_008148  Rxyl_0578  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
235 aa  85.1  8e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0139749  n/a   
 
 
-
 
NC_008148  Rxyl_0984  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
236 aa  85.1  8e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.660466  n/a   
 
 
-
 
NC_002976  SERP2355  amino acid ABC transporter, permease protein  26.75 
 
 
215 aa  84.7  9e-16  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2785  quaternary amine ABC transporter permease  30.22 
 
 
384 aa  84.3  0.000000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1330  quaternary amine ABC transporter permease  30.22 
 
 
384 aa  84.7  0.000000000000001  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0579  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
217 aa  84.3  0.000000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.584474  n/a   
 
 
-
 
NC_010465  YPK_2864  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
384 aa  84.7  0.000000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_1070  substrate-binding region of ABC-type glycine betaine transport system  32.24 
 
 
525 aa  84.3  0.000000000000001  Maricaulis maris MCS10  Bacteria  normal  0.019749  normal 
 
 
-
 
NC_013515  Smon_0574  Substrate-binding region of ABC-type glycine betaine transport system  31.19 
 
 
503 aa  84.3  0.000000000000001  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_18430  binding-protein-dependent transport systems inner membrane component  28.16 
 
 
214 aa  84  0.000000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000175392  n/a   
 
 
-
 
NC_009380  Strop_1634  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
261 aa  83.6  0.000000000000002  Salinispora tropica CNB-440  Bacteria  normal  0.649793  normal  0.788807 
 
 
-
 
NC_013440  Hoch_5205  Substrate-binding region of ABC-type glycine betaine transport system  35.63 
 
 
537 aa  83.6  0.000000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.057164  normal 
 
 
-
 
NC_007973  Rmet_0801  binding-protein-dependent transport systems inner membrane component  33.16 
 
 
216 aa  84  0.000000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.435209 
 
 
-
 
NC_008530  LGAS_0705  ABC-type proline/glycine betaine transport system, permease and substrate binding protein  32.97 
 
 
516 aa  84  0.000000000000002  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.000153769  normal 
 
 
-
 
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