59 homologs were found in PanDaTox collection
for query gene Adeh_3048 on replicon NC_007760
Organism: Anaeromyxobacter dehalogenans 2CP-C



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011891  A2cp1_3247  putative phytochrome sensor protein  93.56 
 
 
466 aa  811    Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0419634  n/a   
 
 
-
 
NC_007760  Adeh_3048  putative GAF sensor protein  100 
 
 
467 aa  925    Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3146  putative phytochrome sensor protein  93.99 
 
 
466 aa  818    Anaeromyxobacter sp. K  Bacteria  normal  0.211727  n/a   
 
 
-
 
NC_009675  Anae109_2916  putative GAF sensor protein  70.41 
 
 
450 aa  600  1e-170  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.129198  normal  0.11422 
 
 
-
 
NC_007347  Reut_A0055  GAF:pyridoxamine 5'-phosphate oxidase-related, FMN-binding  43.82 
 
 
458 aa  325  2e-87  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3699  hypothetical protein  41.1 
 
 
445 aa  322  7e-87  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0630  putative GAF sensor protein  42.09 
 
 
473 aa  306  5.0000000000000004e-82  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0480  putative phytochrome sensor protein  42.55 
 
 
448 aa  300  4e-80  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3714  putative GAF sensor protein  42.4 
 
 
448 aa  294  2e-78  Acidovorax sp. JS42  Bacteria  normal  normal  0.865149 
 
 
-
 
NC_008254  Meso_0350  putative GAF sensor protein  41.07 
 
 
443 aa  288  2e-76  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1553  putative GAF sensor protein  36.34 
 
 
448 aa  236  7e-61  Novosphingobium aromaticivorans DSM 12444  Bacteria  decreased coverage  0.00827304  n/a   
 
 
-
 
NC_009831  Ssed_1133  phosphoenolpyruvate-protein phosphotransferase PtsP  26.47 
 
 
744 aa  53.5  0.000008  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000186405  normal 
 
 
-
 
NC_007955  Mbur_1657  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  26.67 
 
 
134 aa  52.8  0.00001  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2295  multi-sensor signal transduction histidine kinase  26.55 
 
 
905 aa  53.1  0.00001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3170  multi-sensor signal transduction histidine kinase  26.47 
 
 
911 aa  52.8  0.00001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4842  phosphoenolpyruvate-protein phosphotransferase  27.98 
 
 
759 aa  52  0.00002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5284  phosphoenolpyruvate-protein phosphotransferase PtsP  27.98 
 
 
759 aa  52  0.00002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4217  phosphoenolpyruvate-protein phosphotransferase PtsP  27.98 
 
 
759 aa  52.4  0.00002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1217  multi-sensor signal transduction histidine kinase  30.77 
 
 
1877 aa  52  0.00003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_1045  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  28.41 
 
 
134 aa  51.6  0.00003  Methanosaeta thermophila PT  Archaea  normal  0.0950451  n/a   
 
 
-
 
NC_008463  PA14_04410  phosphoenolpyruvate-protein phosphotransferase PtsP  27.38 
 
 
759 aa  50.8  0.00005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.210581  normal 
 
 
-
 
NC_009656  PSPA7_0430  phosphoenolpyruvate-protein phosphotransferase PtsP  27.38 
 
 
759 aa  50.8  0.00006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.871457  n/a   
 
 
-
 
NC_007492  Pfl01_5377  phosphoenolpyruvate-protein phosphotransferase PtsP  27.38 
 
 
759 aa  50.4  0.00007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.839628  normal  0.0308961 
 
 
-
 
NC_013525  Tter_0442  diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)  27.32 
 
 
1785 aa  50.1  0.00008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_5198  phosphoenolpyruvate-protein phosphotransferase PtsP  26.79 
 
 
759 aa  49.3  0.0001  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1228  phosphoenolpyruvate-protein phosphotransferase PtsP  23.6 
 
 
744 aa  49.7  0.0001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0147001  hitchhiker  0.0051402 
 
 
-
 
NC_010501  PputW619_0320  phosphoenolpyruvate-protein phosphotransferase PtsP  27.38 
 
 
759 aa  49.3  0.0001  Pseudomonas putida W619  Bacteria  normal  0.874945  normal  0.406154 
 
 
-
 
NC_009512  Pput_5052  phosphoenolpyruvate-protein phosphotransferase PtsP  26.79 
 
 
759 aa  49.3  0.0001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1039  phosphoenolpyruvate-protein phosphotransferase PtsP  26.47 
 
 
743 aa  49.7  0.0001  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00843837  normal 
 
 
-
 
NC_002947  PP_5145  PTSINtr with GAF domain, PtsP  26.79 
 
 
759 aa  49.3  0.0001  Pseudomonas putida KT2440  Bacteria  normal  0.498029  normal 
 
 
-
 
NC_009523  RoseRS_2162  protein serine phosphatase with GAF(s) sensor(s)  26.21 
 
 
1017 aa  48.9  0.0002  Roseiflexus sp. RS-1  Bacteria  normal  0.266871  normal 
 
 
-
 
NC_007954  Sden_2781  phosphoenolpyruvate-protein phosphotransferase  30.3 
 
 
774 aa  48.9  0.0002  Shewanella denitrificans OS217  Bacteria  normal  0.0331123  n/a   
 
 
-
 
NC_011831  Cagg_0341  GAF sensor signal transduction histidine kinase  23.61 
 
 
725 aa  48.1  0.0003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0143238  hitchhiker  0.0051816 
 
 
-
 
NC_008700  Sama_0864  phosphoenolpyruvate-protein phosphotransferase PtsP  27.27 
 
 
744 aa  48.1  0.0004  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00610428  normal  0.087178 
 
 
-
 
NC_009051  Memar_1441  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25 
 
 
134 aa  47.4  0.0006  Methanoculleus marisnigri JR1  Archaea  normal  0.109181  n/a   
 
 
-
 
NC_012560  Avin_48230  Phosphoenolpyruvate-protein phosphotransferase  26.19 
 
 
759 aa  47.4  0.0006  Azotobacter vinelandii DJ  Bacteria  normal  0.492707  n/a   
 
 
-
 
NC_011146  Gbem_0353  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.97 
 
 
123 aa  46.6  0.001  Geobacter bemidjiensis Bem  Bacteria  normal  0.257976  n/a   
 
 
-
 
NC_009972  Haur_2740  anti-sigma-factor antagonist  37.5 
 
 
307 aa  46.2  0.001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3230  signal transduction histidine kinase  23.76 
 
 
636 aa  46.6  0.001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00732898  n/a   
 
 
-
 
NC_011312  VSAL_I2198  anaerobic nitric oxide reductase transcription regulator  24.84 
 
 
512 aa  45.8  0.002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3250  multi-sensor signal transduction histidine kinase  23.08 
 
 
880 aa  45.4  0.002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1332  phosphoenolpyruvate-protein phosphotransferase PtsP  28.74 
 
 
744 aa  45.4  0.002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_1108  GAF sensor signal transduction histidine kinase  26.04 
 
 
464 aa  44.7  0.003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1196  protein serine phosphatase with GAF(s) sensor(s)  26.13 
 
 
1004 aa  45.1  0.003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.472848  normal 
 
 
-
 
NC_009972  Haur_1421  protein serine phosphatase with GAF(s) sensor(s)  38.81 
 
 
995 aa  44.3  0.005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3042  phosphoenolpyruvate-protein phosphotransferase PtsP  28.16 
 
 
744 aa  44.3  0.005  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00619839  normal  0.738534 
 
 
-
 
NC_011831  Cagg_2013  multi-sensor hybrid histidine kinase  26.95 
 
 
801 aa  44.3  0.005  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2528  transcriptional regulator, NifA subfamily, Fis Family  29.67 
 
 
579 aa  44.3  0.005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011663  Sbal223_3128  PTSINtr with GAF domain, PtsP  27.01 
 
 
744 aa  44.3  0.005  Shewanella baltica OS223  Bacteria  hitchhiker  0.000159427  normal 
 
 
-
 
NC_009665  Shew185_1229  phosphoenolpyruvate-protein phosphotransferase PtsP  27.01 
 
 
744 aa  44.3  0.005  Shewanella baltica OS185  Bacteria  hitchhiker  0.00679774  n/a   
 
 
-
 
NC_009997  Sbal195_1262  phosphoenolpyruvate-protein phosphotransferase PtsP  27.01 
 
 
744 aa  44.3  0.005  Shewanella baltica OS195  Bacteria  hitchhiker  0.00847446  normal  0.0851964 
 
 
-
 
NC_009052  Sbal_1185  phosphoenolpyruvate-protein phosphotransferase PtsP  27.01 
 
 
744 aa  43.9  0.006  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000619187  n/a   
 
 
-
 
NC_008322  Shewmr7_2946  phosphoenolpyruvate-protein phosphotransferase PtsP  28.16 
 
 
744 aa  43.9  0.006  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00960304  normal  0.595887 
 
 
-
 
NC_008321  Shewmr4_2864  phosphoenolpyruvate-protein phosphotransferase PtsP  28.16 
 
 
744 aa  43.9  0.006  Shewanella sp. MR-4  Bacteria  unclonable  0.00000439505  normal 
 
 
-
 
NC_008009  Acid345_4523  diguanylate cyclase with GAF sensor  23.56 
 
 
499 aa  43.9  0.006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.967133  normal  0.833222 
 
 
-
 
NC_012918  GM21_0334  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  29.51 
 
 
123 aa  43.5  0.007  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.47662e-22 
 
 
-
 
NC_011831  Cagg_0012  multi-sensor signal transduction histidine kinase  48.15 
 
 
2783 aa  43.5  0.008  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.296104 
 
 
-
 
NC_009438  Sputcn32_1143  phosphoenolpyruvate-protein phosphotransferase PtsP  27.01 
 
 
744 aa  43.5  0.008  Shewanella putrefaciens CN-32  Bacteria  normal  0.0190957  n/a   
 
 
-
 
NC_007413  Ava_4807  multi-sensor hybrid histidine kinase  31.46 
 
 
1287 aa  43.1  0.009  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00341781  normal  0.634217 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>