Gene Rcas_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1196 
Symbol 
ID5538662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1544401 
End bp1547415 
Gene Length3015 bp 
Protein Length1004 aa 
Translation table11 
GC content63% 
IMG OID640893328 
Productprotein serine phosphatase with GAF(s) sensor(s) 
Protein accessionYP_001431311 
Protein GI156741182 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.472848 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATCGCG AACGGCGGCT CATCCTGTAT TGCCTGGTTG TGGGGGCAGT CGGCTGGACT 
GCCCTCATTC TCAGCAGCCC CGGCGCTGCG CCCTGGGGCA TTCTGGCGTT ATTCATCATT
CTGGCGCTGC TGGTAGAAGC CGCAGCCTTT CGCGTGCCGC CAGCCGACCC TCACAGTCTG
ACCGGCATTG TGATCCTGGC GGCGGCGCTG GCGCTTGGTC CTGCCGATGG CGCGCTGATC
GCCGGGATTT CCGGTTTGAT CTTTGGCATC GCGCTGCCGC TAATATACCG CCGTCCACGT
ACCTTCTACC TGCTCGCGGC ACGACCGATC CTCCGCAGTG GTGTGCGCGC TGCCGCAGTG
CTGGCAGGTG GCGCGCTGGC GCGTCTTCTG GCCGATGGTC CGCCTGGAGG AGCGCTCGCG
TTGATGGCGT TCATCCTCTG CTACCCGACG ATGATCCAAC TGAATCGCGC GATCCGCGAA
TACATTCAGG GTGGCAAGAC CGGCGTGCTC ACATGGTGGC AATCGTCCTG GACGCCGGTT
CTGGCAGCCG AAATCGCACC TCTGCCGCTC GCCGCGCTGT TCGCCGCCAT TTATACGCGC
CTGGGGTCCG GGTATTTTGT GTTTGCCGCT GTCGGCTTGC TTGCCGCCAG TCTGGCAGTG
CGGCAGGCGG CGATGAACCT GCGCAACCAG GGCGCGTCCA TCCGTGAGTT GGGGTTGCTG
AACGAAGCCA GCCGCGAAAT CATTCGCGCC GAACTTGATG TCGAGGCGCT GAGCGAGTTG
ATCTATCGCG CAGCAAGCAA AGTCGTCGAT ACCTCATCGT TCCACCTGGG ATTGTTCGAC
CCGGAGAGTG ACCGGTACAC GCTGGTGGTG CGCGTTCAGG ATCGGGTGCG CCTGCCGCCG
TTGACGGTCG ATCTGCCGAG CGGCGATGGG TTGGTTGGCT GGATGCGGCA AACGGGACGC
TCGTTGCTGG TCGAGGATTT CGCCACTGAG ATGGATCGCC TGCCGGCGCG TCCGCGGTAT
CAGAGCGAGC GTCCGCCCCG TTCTGGAATC TATGTGCCGC TGCTCGATGG CGGCAGGGTG
ATCGGGACCA TTTCTATCCA GAGTTATCAA CCGTATGCGT TCGATGCCGA CGATCTGCGG
ATGCTCTCGC TCCTGGCGGA TCAGGCGGCT GTTGCGATTT CGAAGGCGCG CGCCTTTGCC
GCCGCTAATG AGCGCGCGGT GCAACTCCAG GCGATCCAGG ACGTCAGTGA GCGCATTACG
GCGATACTCG ACCTGGATCA ACTCCTCCCG TCGGTTGTCC GTTTGATTCG CGAACGGTTC
GGCTACCATA CGGTCCATAT TTTTCTGATG GGAGAAGATG GGCGCCTGCA TTTCAGCGCC
AGCACACTCG AAGGCGAGGC GCTCGAACGT TTGCGCCAGA TGGTCGTGAA CCCTGGCGAG
GGGATCGTCG GCAATGTGGT GCTGATTGAT CAACCGTTGC TGGTGAACGA TGTCCGTGCC
GATCCGCGCT ATATCGGCGA CGACTCGATC ACGCGCGCCG AGCTTGCCGT GCCGCTGCGC
TATGCCGATC ATGTTATTGG CGTGCTCGAT ATTCAAAGCA CAGAGGCTGG TCGCTTTCAG
CGCAGCGACC TGTTCGTCGC TCGTACTCTC GCCGATCAGG TCGCCGTTGC CGTCAAGAGC
GCGCGCGCGT TTCAGGCGCA GCGTGAGGAA GCGTGGACGC TCAATGCGCT CCTTCAGGTC
GCCGAGAACC TCTCGCGCGC GACATCGCTT GATACGCTGC TGCCGGCTGT GGTGCGCCTG
CCGCCGCTCC TCCTCGGATG CGACCGCTGC TACTGCCTGA TCTGGGATCG TCCTGCCGCT
TCCTTTACGC CTCTCGCAGC CTATGGGTTG CCCGCTGCCG ACCGCGCCAC GTTCGTCGGT
TGTCCGATTG CCGAGCATGA TGCACCGCTC CTGGCTGAGG TGGTCCGCAC GGTTGTGCCG
CTGGCGCTCG ACTCCGCTGG CGGGCATGGT CATCTCTGCG CCCCGATCAT CGAACGCTTT
GGCAGCGCGT CGCTGCTGGC GACGCCCCTC TGGACACGTG GCGCGGCGTT GGGTGTCCTG
GTGCTCGATT ATGGTCCATC ACCCCATCAG TTCACCGCGC GTGATGTGAT CCTGGCGAAC
GGGTTCGCTG CGCAGATCGC CGGAGCGCTC GAAAGCGCAC TGCTGGCGCA GGAGGCAGCG
CAGGCAGCGC GGCTTGAGGA AGAACTGCGG GTGGCGCGCG ATATTCAGCG CACCCTGTTG
CCATCGCGCG CGCCAGATCT GCCGGGTTGG GACACGGCTG CCGATTGGCG GTCGGCGCGG
ATGGTCGGCG GGGATTTTTT CGATTACTGG TATCTTCCTG TGCCGCGACC ATTTGACAGA
AATGATGATC CCTCAGCTAC AGACGGCTTT GCCCGCCAAC CGCTGGGATT TGTCATCGCT
GATGTGAGCG ACAAAGGCGT GCCTGCGGCG CTGTTCATGG CGCTGGCGCG CAGCCTGGTG
CGCGCGGCGG CGCTCGACGG ATCAACGCCG GCGGCGGCGT TGACCCGCGC CAATCGCTGG
ATCACTCGCG ACACCGAAGC CGGGATGTTC GTGACTGTTT TCTACGGCAT CATCGAACCG
CATACCGGGC ATATGCGTTA CTGCTGCGCC GGGCATAACC CGCCGCTCCT GTTTCGCGCC
GATGGTGAGG TCGAAACGCT TCATACTCCC GGTATTGCGC TTGGCGTGCT TGAAAATATC
GCATTGGAGG AACGTGAGGT GTGCATCGCC CCCGGCGATG TCGTCGTCTG TTATACCGAC
GGCGTCACCG AAGCGATCAA TGCCGCAGAA GAACCGTTTG GCGTCGAACG CTTGAGCGCA
ACGGTTGCGG CAATGCGCAC CGGTCGCGCA CAGTCCATCC TGGAAGCCAT TACCGAGGCG
CTTGGTCGGC ATGCCGAAGG TCCGCTCTAT GACGATGTCA CACTGGTGAT CATCAAACGA
GAGGACCATG ACTGA
 
Protein sequence
MNRERRLILY CLVVGAVGWT ALILSSPGAA PWGILALFII LALLVEAAAF RVPPADPHSL 
TGIVILAAAL ALGPADGALI AGISGLIFGI ALPLIYRRPR TFYLLAARPI LRSGVRAAAV
LAGGALARLL ADGPPGGALA LMAFILCYPT MIQLNRAIRE YIQGGKTGVL TWWQSSWTPV
LAAEIAPLPL AALFAAIYTR LGSGYFVFAA VGLLAASLAV RQAAMNLRNQ GASIRELGLL
NEASREIIRA ELDVEALSEL IYRAASKVVD TSSFHLGLFD PESDRYTLVV RVQDRVRLPP
LTVDLPSGDG LVGWMRQTGR SLLVEDFATE MDRLPARPRY QSERPPRSGI YVPLLDGGRV
IGTISIQSYQ PYAFDADDLR MLSLLADQAA VAISKARAFA AANERAVQLQ AIQDVSERIT
AILDLDQLLP SVVRLIRERF GYHTVHIFLM GEDGRLHFSA STLEGEALER LRQMVVNPGE
GIVGNVVLID QPLLVNDVRA DPRYIGDDSI TRAELAVPLR YADHVIGVLD IQSTEAGRFQ
RSDLFVARTL ADQVAVAVKS ARAFQAQREE AWTLNALLQV AENLSRATSL DTLLPAVVRL
PPLLLGCDRC YCLIWDRPAA SFTPLAAYGL PAADRATFVG CPIAEHDAPL LAEVVRTVVP
LALDSAGGHG HLCAPIIERF GSASLLATPL WTRGAALGVL VLDYGPSPHQ FTARDVILAN
GFAAQIAGAL ESALLAQEAA QAARLEEELR VARDIQRTLL PSRAPDLPGW DTAADWRSAR
MVGGDFFDYW YLPVPRPFDR NDDPSATDGF ARQPLGFVIA DVSDKGVPAA LFMALARSLV
RAAALDGSTP AAALTRANRW ITRDTEAGMF VTVFYGIIEP HTGHMRYCCA GHNPPLLFRA
DGEVETLHTP GIALGVLENI ALEEREVCIA PGDVVVCYTD GVTEAINAAE EPFGVERLSA
TVAAMRTGRA QSILEAITEA LGRHAEGPLY DDVTLVIIKR EDHD