| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1196 |
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| Symbol | |
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| ID | 5538662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1544401 |
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| End bp | 1547415 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893328 |
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| Product | protein serine phosphatase with GAF(s) sensor(s) |
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| Protein accession | YP_001431311 |
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| Protein GI | 156741182 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.472848 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCGCG AACGGCGGCT CATCCTGTAT TGCCTGGTTG TGGGGGCAGT CGGCTGGACT
GCCCTCATTC TCAGCAGCCC CGGCGCTGCG CCCTGGGGCA TTCTGGCGTT ATTCATCATT
CTGGCGCTGC TGGTAGAAGC CGCAGCCTTT CGCGTGCCGC CAGCCGACCC TCACAGTCTG
ACCGGCATTG TGATCCTGGC GGCGGCGCTG GCGCTTGGTC CTGCCGATGG CGCGCTGATC
GCCGGGATTT CCGGTTTGAT CTTTGGCATC GCGCTGCCGC TAATATACCG CCGTCCACGT
ACCTTCTACC TGCTCGCGGC ACGACCGATC CTCCGCAGTG GTGTGCGCGC TGCCGCAGTG
CTGGCAGGTG GCGCGCTGGC GCGTCTTCTG GCCGATGGTC CGCCTGGAGG AGCGCTCGCG
TTGATGGCGT TCATCCTCTG CTACCCGACG ATGATCCAAC TGAATCGCGC GATCCGCGAA
TACATTCAGG GTGGCAAGAC CGGCGTGCTC ACATGGTGGC AATCGTCCTG GACGCCGGTT
CTGGCAGCCG AAATCGCACC TCTGCCGCTC GCCGCGCTGT TCGCCGCCAT TTATACGCGC
CTGGGGTCCG GGTATTTTGT GTTTGCCGCT GTCGGCTTGC TTGCCGCCAG TCTGGCAGTG
CGGCAGGCGG CGATGAACCT GCGCAACCAG GGCGCGTCCA TCCGTGAGTT GGGGTTGCTG
AACGAAGCCA GCCGCGAAAT CATTCGCGCC GAACTTGATG TCGAGGCGCT GAGCGAGTTG
ATCTATCGCG CAGCAAGCAA AGTCGTCGAT ACCTCATCGT TCCACCTGGG ATTGTTCGAC
CCGGAGAGTG ACCGGTACAC GCTGGTGGTG CGCGTTCAGG ATCGGGTGCG CCTGCCGCCG
TTGACGGTCG ATCTGCCGAG CGGCGATGGG TTGGTTGGCT GGATGCGGCA AACGGGACGC
TCGTTGCTGG TCGAGGATTT CGCCACTGAG ATGGATCGCC TGCCGGCGCG TCCGCGGTAT
CAGAGCGAGC GTCCGCCCCG TTCTGGAATC TATGTGCCGC TGCTCGATGG CGGCAGGGTG
ATCGGGACCA TTTCTATCCA GAGTTATCAA CCGTATGCGT TCGATGCCGA CGATCTGCGG
ATGCTCTCGC TCCTGGCGGA TCAGGCGGCT GTTGCGATTT CGAAGGCGCG CGCCTTTGCC
GCCGCTAATG AGCGCGCGGT GCAACTCCAG GCGATCCAGG ACGTCAGTGA GCGCATTACG
GCGATACTCG ACCTGGATCA ACTCCTCCCG TCGGTTGTCC GTTTGATTCG CGAACGGTTC
GGCTACCATA CGGTCCATAT TTTTCTGATG GGAGAAGATG GGCGCCTGCA TTTCAGCGCC
AGCACACTCG AAGGCGAGGC GCTCGAACGT TTGCGCCAGA TGGTCGTGAA CCCTGGCGAG
GGGATCGTCG GCAATGTGGT GCTGATTGAT CAACCGTTGC TGGTGAACGA TGTCCGTGCC
GATCCGCGCT ATATCGGCGA CGACTCGATC ACGCGCGCCG AGCTTGCCGT GCCGCTGCGC
TATGCCGATC ATGTTATTGG CGTGCTCGAT ATTCAAAGCA CAGAGGCTGG TCGCTTTCAG
CGCAGCGACC TGTTCGTCGC TCGTACTCTC GCCGATCAGG TCGCCGTTGC CGTCAAGAGC
GCGCGCGCGT TTCAGGCGCA GCGTGAGGAA GCGTGGACGC TCAATGCGCT CCTTCAGGTC
GCCGAGAACC TCTCGCGCGC GACATCGCTT GATACGCTGC TGCCGGCTGT GGTGCGCCTG
CCGCCGCTCC TCCTCGGATG CGACCGCTGC TACTGCCTGA TCTGGGATCG TCCTGCCGCT
TCCTTTACGC CTCTCGCAGC CTATGGGTTG CCCGCTGCCG ACCGCGCCAC GTTCGTCGGT
TGTCCGATTG CCGAGCATGA TGCACCGCTC CTGGCTGAGG TGGTCCGCAC GGTTGTGCCG
CTGGCGCTCG ACTCCGCTGG CGGGCATGGT CATCTCTGCG CCCCGATCAT CGAACGCTTT
GGCAGCGCGT CGCTGCTGGC GACGCCCCTC TGGACACGTG GCGCGGCGTT GGGTGTCCTG
GTGCTCGATT ATGGTCCATC ACCCCATCAG TTCACCGCGC GTGATGTGAT CCTGGCGAAC
GGGTTCGCTG CGCAGATCGC CGGAGCGCTC GAAAGCGCAC TGCTGGCGCA GGAGGCAGCG
CAGGCAGCGC GGCTTGAGGA AGAACTGCGG GTGGCGCGCG ATATTCAGCG CACCCTGTTG
CCATCGCGCG CGCCAGATCT GCCGGGTTGG GACACGGCTG CCGATTGGCG GTCGGCGCGG
ATGGTCGGCG GGGATTTTTT CGATTACTGG TATCTTCCTG TGCCGCGACC ATTTGACAGA
AATGATGATC CCTCAGCTAC AGACGGCTTT GCCCGCCAAC CGCTGGGATT TGTCATCGCT
GATGTGAGCG ACAAAGGCGT GCCTGCGGCG CTGTTCATGG CGCTGGCGCG CAGCCTGGTG
CGCGCGGCGG CGCTCGACGG ATCAACGCCG GCGGCGGCGT TGACCCGCGC CAATCGCTGG
ATCACTCGCG ACACCGAAGC CGGGATGTTC GTGACTGTTT TCTACGGCAT CATCGAACCG
CATACCGGGC ATATGCGTTA CTGCTGCGCC GGGCATAACC CGCCGCTCCT GTTTCGCGCC
GATGGTGAGG TCGAAACGCT TCATACTCCC GGTATTGCGC TTGGCGTGCT TGAAAATATC
GCATTGGAGG AACGTGAGGT GTGCATCGCC CCCGGCGATG TCGTCGTCTG TTATACCGAC
GGCGTCACCG AAGCGATCAA TGCCGCAGAA GAACCGTTTG GCGTCGAACG CTTGAGCGCA
ACGGTTGCGG CAATGCGCAC CGGTCGCGCA CAGTCCATCC TGGAAGCCAT TACCGAGGCG
CTTGGTCGGC ATGCCGAAGG TCCGCTCTAT GACGATGTCA CACTGGTGAT CATCAAACGA
GAGGACCATG ACTGA
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| Protein sequence | MNRERRLILY CLVVGAVGWT ALILSSPGAA PWGILALFII LALLVEAAAF RVPPADPHSL
TGIVILAAAL ALGPADGALI AGISGLIFGI ALPLIYRRPR TFYLLAARPI LRSGVRAAAV
LAGGALARLL ADGPPGGALA LMAFILCYPT MIQLNRAIRE YIQGGKTGVL TWWQSSWTPV
LAAEIAPLPL AALFAAIYTR LGSGYFVFAA VGLLAASLAV RQAAMNLRNQ GASIRELGLL
NEASREIIRA ELDVEALSEL IYRAASKVVD TSSFHLGLFD PESDRYTLVV RVQDRVRLPP
LTVDLPSGDG LVGWMRQTGR SLLVEDFATE MDRLPARPRY QSERPPRSGI YVPLLDGGRV
IGTISIQSYQ PYAFDADDLR MLSLLADQAA VAISKARAFA AANERAVQLQ AIQDVSERIT
AILDLDQLLP SVVRLIRERF GYHTVHIFLM GEDGRLHFSA STLEGEALER LRQMVVNPGE
GIVGNVVLID QPLLVNDVRA DPRYIGDDSI TRAELAVPLR YADHVIGVLD IQSTEAGRFQ
RSDLFVARTL ADQVAVAVKS ARAFQAQREE AWTLNALLQV AENLSRATSL DTLLPAVVRL
PPLLLGCDRC YCLIWDRPAA SFTPLAAYGL PAADRATFVG CPIAEHDAPL LAEVVRTVVP
LALDSAGGHG HLCAPIIERF GSASLLATPL WTRGAALGVL VLDYGPSPHQ FTARDVILAN
GFAAQIAGAL ESALLAQEAA QAARLEEELR VARDIQRTLL PSRAPDLPGW DTAADWRSAR
MVGGDFFDYW YLPVPRPFDR NDDPSATDGF ARQPLGFVIA DVSDKGVPAA LFMALARSLV
RAAALDGSTP AAALTRANRW ITRDTEAGMF VTVFYGIIEP HTGHMRYCCA GHNPPLLFRA
DGEVETLHTP GIALGVLENI ALEEREVCIA PGDVVVCYTD GVTEAINAAE EPFGVERLSA
TVAAMRTGRA QSILEAITEA LGRHAEGPLY DDVTLVIIKR EDHD
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