Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1228 |
Symbol | |
ID | 6115463 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1566442 |
End bp | 1568676 |
Gene Length | 2235 bp |
Protein Length | 744 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641632712 |
Product | phosphoenolpyruvate-protein phosphotransferase PtsP |
Protein accession | YP_001759616 |
Protein GI | 170725590 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3605] Signal transduction protein containing GAF and PtsI domains |
TIGRFAM ID | [TIGR01417] phosphoenolpyruvate-protein phosphotransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0147001 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0051402 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTTAAAAA CACTAAGAGA TATTACACAG GCTGTTGCTG CGGCTCAGGA TCTCCACTCT GCATTAGCCC TATTGGTGTC TCAAACCAAG TCAGCCATGG CAACCCAGTG TTGCTCTATC TATATACTAG AGGGGCGAGA GCTTATTCTA TCGGCCACCG ATGGTCTGCT TACTGATGCG GTTGGTCAGG TGAAGATGTC ATTGAGTGAA GGCCTAGTTG GGCTAGTTGC CGAGCGGGAA GAGGCTGTTA ACCTTGCTGA TGCCCGTCAA CACCCTAGGT TTAAAGAGTT CTCTGAAGTT GAGGAGGAGA GCTTTCGCGC ATTTCTTGCA GTCCCTATTA TCTACCAAAA ACGCATTCTA GGTGTTCTAG TTGTTCAGCA GATCGAAGCT CGGCAGTTTA ATGAGGGTGA AGAGGCATTT CTGATGACCT TAGCGGCGCA GCTTGCGATG GCTATCAGAA ACCTGAGAAT GAAAGATGAG GTGAAAACCA GCTCTAACCA ACTGCATTTT ACCGGCACCT CAGCTGCTAA CGGTATCGCC ATCGCCCATG CTTTAGTACT TGGTGGCCAG ATAGATCTGG AACAGCCAGA GTCAAGAGCT CAAGATATTA CCTCCGAGGA GGCAAGGTTA CACACGGCGA TTAGTACCTG TAAAGATACG TTAACCTCTC TGTCGCAGCG ATTTGATCAA GAGCAGGATA ATGAAGTGGT CTCTATCTTC TCTGCTCTAT TACTTCTGCT TGATCACGCG AGTTTAGGGG GGGAGTACAT TAAAGAGGTC AGAGATGGCT GGTGTGCGGT TTCAGCTGTC AGTCGAGTTT CTCTGCGTTA CATCGAGCAG TTTACTCAGA TGCAAGATCT CTACTTGAAG GAGCGGGCCA GTGATATTCG CGATCTAGGT CAGCGGGTAT TACGTCTCTT GATTGAGCCT GAAAGGATGG AGGTTGATCC TGAGATCCCA GTGATTTTGG TCACTAAAGA AGCCGATGCC ACCATGTTAG CTGAGTTCCC CAGACAGAAA CTAGTGGGAA TTGTGACTGA GCAAGGGGGA GTCAACTCCC ATGCGGCTAT TTTAGCTCGA GCTTTAGGCG TCCCGGCGAT TATCGGTGTC GAGGGAGTGT TGACGGCAGG TATCGATAAT AAGCTGCTTA TTATCAATGC TAACCGCGGC CAACTCTTAG TCTCTCCTAC TCCTACATTG ATTAATGAGT ATCGCAACCT TATCTCTGCC GAAAAGGCGC TGCAAAAGCA GTATGCGATG GAGTTGAACC TGCCTGCAGA GACCATTGAT GGAAAGCGGA TCCATCTTTA TTTAAATGCT GGCTTGTTAA GCAGTTTAGC TTCCGAGATA GCCGATGGTT CAGACGGGGT TGGCCTGTAT CGTACTGAGA TCCCTTTTAT GTTGCACCAA AGATTCCCTA GCGAGTCAGA GCAAGTAAAG GTGTACAAAG AAGTTCTTGA CGCTGCCAGT GATAAGCCGG TGGTGATGCG TACCTTAGAT GTCGGTGGCG ATAAACCACT CTCCTATTTT CCTATTAATG AAGAAAACCC TTTTCTTGGT TGGCGAGGTA TTCGTCTTTC TCTTGATCAC CCTGAGCTGT TTCTTGTGCA GCTTAGGGCG ATGGTCCAAG CTGGGGGCGA AGGGGAGCAG CTGCATATCT TACTGCCAAT GGTGAGCAGT TTAGATGAGA TAGATCAGGC TAAAGCTTAC TTAGAGCAAG CCTATTTTGA GCTGAAAAAT GATGTGAACC CTAATATCGT CAGACCAAAA CTTGGGATCA TGCTTGAAGT ACCTGCACTA CTTTACCAAC TTGCAGAGGT CGCAAAACGG GTAGATTTTG TCTCCGTTGG CTCTAACGAC TTAACCCAAT ACCTGCTAGC TGTGGATAGA AATAACCCAA GGGTCAGCAC GCTTTATGAT TGTTATCACC CTGGAATACT TCGTGCTTTA AAGCGGGCAC GTTTTGACTG TTGGCAATAC CATCTGCCTG TCAGCGTATG TGGTGAACTT GCTGGAGAGC CTATCGGTGT TATTTTATTG GTTGCCATGG GTTATGATCA GTTAAGTATG AACCAGGGGA GTTTAGCTAA GGTGAACTAC CTACTTAGAC GAGTGTCTCA TTCTGATCTC AGCGAACTTT TGGAGATGGC ACTGACATTA AATAATGGCC GTCAAGTAAG GGAGTTGGTG AGAAGCTACT TTGAATCTCG CGAGCTGGGT GCTCTGCTTA ACTAA
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Protein sequence | MLKTLRDITQ AVAAAQDLHS ALALLVSQTK SAMATQCCSI YILEGRELIL SATDGLLTDA VGQVKMSLSE GLVGLVAERE EAVNLADARQ HPRFKEFSEV EEESFRAFLA VPIIYQKRIL GVLVVQQIEA RQFNEGEEAF LMTLAAQLAM AIRNLRMKDE VKTSSNQLHF TGTSAANGIA IAHALVLGGQ IDLEQPESRA QDITSEEARL HTAISTCKDT LTSLSQRFDQ EQDNEVVSIF SALLLLLDHA SLGGEYIKEV RDGWCAVSAV SRVSLRYIEQ FTQMQDLYLK ERASDIRDLG QRVLRLLIEP ERMEVDPEIP VILVTKEADA TMLAEFPRQK LVGIVTEQGG VNSHAAILAR ALGVPAIIGV EGVLTAGIDN KLLIINANRG QLLVSPTPTL INEYRNLISA EKALQKQYAM ELNLPAETID GKRIHLYLNA GLLSSLASEI ADGSDGVGLY RTEIPFMLHQ RFPSESEQVK VYKEVLDAAS DKPVVMRTLD VGGDKPLSYF PINEENPFLG WRGIRLSLDH PELFLVQLRA MVQAGGEGEQ LHILLPMVSS LDEIDQAKAY LEQAYFELKN DVNPNIVRPK LGIMLEVPAL LYQLAEVAKR VDFVSVGSND LTQYLLAVDR NNPRVSTLYD CYHPGILRAL KRARFDCWQY HLPVSVCGEL AGEPIGVILL VAMGYDQLSM NQGSLAKVNY LLRRVSHSDL SELLEMALTL NNGRQVRELV RSYFESRELG ALLN
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