| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1133 |
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| Symbol | |
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| ID | 5613768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1353349 |
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| End bp | 1355583 |
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| Gene Length | 2235 bp |
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| Protein Length | 744 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931982 |
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| Product | phosphoenolpyruvate-protein phosphotransferase PtsP |
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| Protein accession | YP_001472872 |
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| Protein GI | 157374272 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3605] Signal transduction protein containing GAF and PtsI domains |
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| TIGRFAM ID | [TIGR01417] phosphoenolpyruvate-protein phosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000186405 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTAAAA CACTAAGAGA TATTACTCAG GCCGTTGCGG CGGCTCAAGA TCTCCATTCT
TCGCTCGAGT TACTCGTTTC TCAAACTAAA TCAGCGATGG CGACTCAATG CTGCTCTATC
TACCTATTAG AGGGGCAGGA ACTCATATTA TCAGCAACTG ATGGTTTAGA TACTGATGCC
GTTGGCCAGG TAAGAATGCC CCTTTCTGAA GGTTTGGTTG GTTTGGTGGC CGAACGCGAA
GAACCTATCA ATCTGGCGGA CGCTAACCAA CACCCTAGAT TTAAAAAATT TGTTGAAGCC
GAAGAGGAGA GCTTTAGAGC TTTTCTGGCT GTACCGATAA TATATCAAAA AAATGTTCTG
GGGGTTTTAG TCGTTCAGCA AGCCGATACT CGTCAATTTG ATGAAGGTGA AGAGGCTTTT
CTGATGACTT TAGCGGCGCA GCTCGCTATG GCGATAAGGC ACCTGAAGAT TAAAGCCGAA
GTGAAGTGTT CTCCCGACCT TCTTCACTTT ACCGGTACAT CGGCTGCTAA TGGTGTTGCC
ATCGCGCACG CATTGGTACT CGGTGGTCAG ATTGCACTGG AGCAACCTCA AAATCGAACT
TCTGATGTTG GCCATGAAGA GTCGAGGTTG AATTCGGCGA TTGAAGCTTG TAAAGATACT
CTGACTTCAT TGTCACAACG TTTCGATCAG GAGCAAGATA ACGAAGTCGT TTCCATATTT
TCTGCACTGC AACAGCTACT CGATAATGCC AGTCTTGGTG GCGAATACAT TAAAGAGGTT
CGTGAAGGCT GGTGTGCCGT ATCGGCGGTG AGTCGAGTCT CACTAAGATA CATTGAACAG
TTTACCCAGA TGCAGGATCT TTATCTAAAG GAGCGTGCGG GCGATATTCG CGATCTGGGA
TTGCGGGTGC TGAGGCTGCT GATTGAGCCT CAGAGGATGG AGCTAGAGCC CGATGTGCCA
GTTATTCTTG TTACCAAAGA AGCCGACGCT ACGATGCTTG CCGAGTTTCC GAGGCACAAG
TTAGTCGGTA TTGTCACCGA GCTCGGTGGC GTCAACTCTC ATGCCGCAAT TCTGGCCAGG
GCACTGGGTG TGCCGGCGAT TATCGGCGTC GAAGGGGTGC TTTCTGCCGG TATAGATAAG
AAGTTACTCA TCATTAATGC CAATCGTGGA CAACTGCTGG TTTCACCAAC ACCGCCACTG
ATTGCCGAAT ACCGAAACCT GATCTCGGCC GAAAAAGCCC TGCAGAACAA ATATGCTCAA
GAGTTAGATC TTCCGGCAGA AACTCTGGAC GGTAAAAGAA TTCACCTGTA TCTCAATGCC
GGTTTATTAA GTAGTTTGGC ATCGGAAATC GCCAATGGCG CAGATGGCGT CGGTCTATAT
CGCACCGAAA TTCCTTTCAT GTTACATCAA AGGTTTCCCA GCGAGTCTGA GCAGGTAAAA
GTTTATCAAC AGGTGCTGGA AGCTGCGAAT GACAGACCCG TTGTCATGCG CACCTTAGAC
GTTGGCGGTG ACAAGCCCTT GTCATATTTT CCTATTAACG AGGAAAACCC TTTTCTGGGC
TGGCGCGGCA TAAGACTCTC CCTAGATCAT CCGGAGCTGT TTCTTGTACA GCTCAGGGCG
ATGATACAGG CTGGAGATGA AAAAGAGCAG CTGCATATCT TGCTTCCTAT GGTCAGCAAC
CTAGAGGAGA TCGATCAGGC TATAGCCTAT CTTGAGCAAG CTTATAATGA ACTTAAAAGT
GATGTTAATA AGAATATCGT AAGACCCAAA CTTGGGATTA TGCTGGAAGT ACCCGCCCTC
CTGTATCAAC TTGCCGAGGT GGCAAGACGG GTTGATTTTG TTTCTGTAGG CTCTAATGAC
CTGACTCAAT ACCTGCTGGC GGTGGATAGA AATAACCCTC GAGTGAGCAC CCTGTATGAT
TGCTACCATC CAGGAATATT AAGGGCGCTG AAACGCGCAC GGTTTGATTG TTGGCAATAT
AATCTTCCCG TTAGTGTGTG TGGTGAGTTG GCTGGTGAGC CTATCGGTGT GATCTTACTC
GTTGCTATGG GATACGATCA GCTGAGTATG AATCAGGGGA GTTTAGCCAG GATCAATTAT
TTGCTTAGAA GGGTGTCTCA TTCCGATCTC AGTGAATTGC TTCAGATGGC CCTGACGCTA
ACTTCGGGGC AAGAGGTTAG GGAGTTGGTC AGGGAATATT TCGAATCTCG AGAGTTAGGA
GCAATTCTTA ACTAG
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| Protein sequence | MLKTLRDITQ AVAAAQDLHS SLELLVSQTK SAMATQCCSI YLLEGQELIL SATDGLDTDA
VGQVRMPLSE GLVGLVAERE EPINLADANQ HPRFKKFVEA EEESFRAFLA VPIIYQKNVL
GVLVVQQADT RQFDEGEEAF LMTLAAQLAM AIRHLKIKAE VKCSPDLLHF TGTSAANGVA
IAHALVLGGQ IALEQPQNRT SDVGHEESRL NSAIEACKDT LTSLSQRFDQ EQDNEVVSIF
SALQQLLDNA SLGGEYIKEV REGWCAVSAV SRVSLRYIEQ FTQMQDLYLK ERAGDIRDLG
LRVLRLLIEP QRMELEPDVP VILVTKEADA TMLAEFPRHK LVGIVTELGG VNSHAAILAR
ALGVPAIIGV EGVLSAGIDK KLLIINANRG QLLVSPTPPL IAEYRNLISA EKALQNKYAQ
ELDLPAETLD GKRIHLYLNA GLLSSLASEI ANGADGVGLY RTEIPFMLHQ RFPSESEQVK
VYQQVLEAAN DRPVVMRTLD VGGDKPLSYF PINEENPFLG WRGIRLSLDH PELFLVQLRA
MIQAGDEKEQ LHILLPMVSN LEEIDQAIAY LEQAYNELKS DVNKNIVRPK LGIMLEVPAL
LYQLAEVARR VDFVSVGSND LTQYLLAVDR NNPRVSTLYD CYHPGILRAL KRARFDCWQY
NLPVSVCGEL AGEPIGVILL VAMGYDQLSM NQGSLARINY LLRRVSHSDL SELLQMALTL
TSGQEVRELV REYFESRELG AILN
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