| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2295 |
|---|
| Symbol | |
|---|
| ID | 5209262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 2834595 |
|---|
| End bp | 2837312 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640595900 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001276624 |
|---|
| Protein GI | 148656419 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCATA CAACGCCGAT CCATCTGACC CACTGGTTGA GCGCCAACCG CACGCACCTC
CTGCCGCGCT GGATCGCTGC GGGTGATGAT CTCTTCGCAC CTGAGCGCAC CTTATCGTCA
GGAAATGGTG GGAGTGTTCC TGTTCACCCC GATGAGCGCA AGATCGTTCT GACGACGCTG
TACGATGGTC TGATTGCCGC CGCAGGCGGT GATGAGAAGC CGCTCGATGA GTGCCTGAGC
ACGCTACGGG CGCTGCGAAG CAGCATCGGC GAAGACGACC TGCCGCGTCA GATTATGCTC
TTCCAGCGGC TGCGCAGCAT GGCTCGCCAC GACCTGTTTC AGGAGACGAT CGAAACAGGC
GCATCCCCAA CGCGAGAAGA AACCTTCTAC CACCTGTTTG ATGCGCTCGA TGATCTGATT
GATCGCGCCA TCACCATGCT GGTCGAACGA TGGGTCAATG CCGCGCACAA AGTGCTGCAC
GAGCTGAACG AAACCCGTCT GCTGGTCGAA AGCCTGTACC GCGATGCAGA AGTCACTGAC
CGCACCACCC TGCAGGTATC ACGTCTCAAC CAACTGGCGC GTGAACTGTC GTCCACCCTC
GATGATCGTG AAGCGCACCT GAAACAGATC TGCATCTCTC TGGCGGAAGT GCTTGCCCCG
GTGGTCGTCG ATATCTGGTT GCTCAAGCCG GATTCCACCG CTCTTGAACT GGCGTGGCGT
CACGGCGCCG AACTGCCGGA CACCCGCGAC ATGCCGCTGG ATGCGCAGAA CGATCTGGTG
GTGCAGACAT TCACGCAGGG GGAAACGATC TTCACGACCG ACATTCCTGC ATCGTTGCAG
AGCGACTGGC GAATTGCAAA CCTTGCGGTT CTGACTGCGC CGCTTGTAAC GCAACGCGGT
ATTGCGGGCA TCATCGTCTG TCAGGGAGAC GATCACACGC TTGCAGACCG CTCCCAGCAA
GAGTTTGTGC GCTCGGTTGC GAGCCAGGCA GCCATTGCGC TGGAGAATGC ACGCCTGTAT
GCCGAAGTGC GCGCCTTCAA TGTAAAGCTG GAAGCGCGCA TCAACGAGCG TACCCAGGAA
CTCCGCACGC TCAACGAAAT TGCGCTGGAA GTCAACAGTT CGCTCGACAA CGATACCATT
ATGAACAACT CGCTCACCAG GCTGGCACAA TTGATCGGTG TCGAGCACGG GTCGATCATG
CTGCTTGATC GCGAGACCGA TCAGTTGATC AATTCCGCAG TGCTGGGACG GCACGGTAAT
GTCGGCAGTG TTCGCTTCCC GCTAGGAAAA GGGATCGTTG GCAAGGTGGC GCAGAATCGC
AAACCGTTGA ACGTGCCGGA TGTGACGACA GACCCGAACT GGGAGCCGCC ACCCGAAGAT
GATGCCTCGG CAAAGCGCAG CGGCTCGATG ATTGCTGTGC CACTGATCGC CCATCACGAA
TTGCTCGGCG TGCTCGTGCT GTCCCATGAG CAAACGGGAT ACTTCCGTGA CGAACATCTG
CGCCTGTTGA CCGCCGCTGC CAATCAGATT GCGATCGGCA TCTACAATGC GCAAATGTAT
CAACAGGTGG AACAGCAATA CTGGCGTCGC TACGAGATGC AGCAATTGCA GGAAAAGGCG
GTGAGCCAGA GCACGGCTAT TCTGCAAAGC CTCTCAGACG GAGTCATTGT GTGTGATCAG
AACGGTGCGG TGATCACGGT CAACCTGGCA GCCGAGAAGA TCCTCGACCG ACCGATCGAT
GAACTGGTCA CGTGGAACCT TGGCGATCTG CTGCGCCGTC TTCTGGGACG GCGCGTCAGT
GAGTTGCCGC TGGAAGATCT GCTGGCGCAT CCGTGGGACG AGCGCGCTCG ACCGCGCACT
CTCTCAACGA CGTTCCAGCT CGGACCGCGC ACGATCAGCG TGACGCTCGA TCCGGTGATT
TCGACCAAAG AAGAGTTGCT CGGCGCTGTT GCCGTATTTC GTGATCGCAC CCGCGAGGTT
GAATCGGACC GTCTCAAGAC CGAATTCATC GGCACCGTCT CGCACGAACT GCGCACCCCG
ATGACCTCGA TCAAGGGATT CACCCAACTG CTGGTGATGG GCAATCTTGG ACCGGTGAAC
GAGACCCAAA GAGAGTTTCT GAATATCATC CAGTCGAATG CCGAGCGAAT GATTGCCATC
ATCAACGATC TGCTCGACAT CACCAAGATC GAAACCGGCA GCGTCGAACT GGAGATTCGC
CCGATTCACG TCGCAGAGAC GCTGAGCAAA GTCCTGCTCG ATCTTCAGAC GAAGGTGCAC
GAACGACAGC AAACGTTGAC CCTGAGCCTC CCCGCCGGGT TGCCGCTGGT GCGCGCCGAT
GCCCACCGGT TCAATCAGAT TCTGTTCAAC CTGGTATCGA ATGCGGTCAA GTATACGCCG
CGCGGCGGCT CGATCACCAT CGAAGCGCGC GAAGTCACCG CCGAGGCGGT ACCTGAAGAC
GAGCGTGATG GACTGCGCCC TGGACGCTAC ATCCAGATCG ATGTGCGCGA TACTGGCGTC
GGTATTGCAC CTGACGATGT TCCGCGCATC TGGGAGCGAT TCTACCGCAC TGAAAACCCG
CTCAAAGTGG AAGCCGGCGG CACCGGTCTC GGTCTGTCGC TGGTCAAACC GCTCGTCAGG
CTTCTCGGCG GGCGTATCTG GGTCGAAAGC CGGATCAATG TGGGGAGCAC GTTCAGTTTC
GTGCTGCCTG CTGCCTGA
|
|---|
| Protein sequence | MQHTTPIHLT HWLSANRTHL LPRWIAAGDD LFAPERTLSS GNGGSVPVHP DERKIVLTTL
YDGLIAAAGG DEKPLDECLS TLRALRSSIG EDDLPRQIML FQRLRSMARH DLFQETIETG
ASPTREETFY HLFDALDDLI DRAITMLVER WVNAAHKVLH ELNETRLLVE SLYRDAEVTD
RTTLQVSRLN QLARELSSTL DDREAHLKQI CISLAEVLAP VVVDIWLLKP DSTALELAWR
HGAELPDTRD MPLDAQNDLV VQTFTQGETI FTTDIPASLQ SDWRIANLAV LTAPLVTQRG
IAGIIVCQGD DHTLADRSQQ EFVRSVASQA AIALENARLY AEVRAFNVKL EARINERTQE
LRTLNEIALE VNSSLDNDTI MNNSLTRLAQ LIGVEHGSIM LLDRETDQLI NSAVLGRHGN
VGSVRFPLGK GIVGKVAQNR KPLNVPDVTT DPNWEPPPED DASAKRSGSM IAVPLIAHHE
LLGVLVLSHE QTGYFRDEHL RLLTAAANQI AIGIYNAQMY QQVEQQYWRR YEMQQLQEKA
VSQSTAILQS LSDGVIVCDQ NGAVITVNLA AEKILDRPID ELVTWNLGDL LRRLLGRRVS
ELPLEDLLAH PWDERARPRT LSTTFQLGPR TISVTLDPVI STKEELLGAV AVFRDRTREV
ESDRLKTEFI GTVSHELRTP MTSIKGFTQL LVMGNLGPVN ETQREFLNII QSNAERMIAI
INDLLDITKI ETGSVELEIR PIHVAETLSK VLLDLQTKVH ERQQTLTLSL PAGLPLVRAD
AHRFNQILFN LVSNAVKYTP RGGSITIEAR EVTAEAVPED ERDGLRPGRY IQIDVRDTGV
GIAPDDVPRI WERFYRTENP LKVEAGGTGL GLSLVKPLVR LLGGRIWVES RINVGSTFSF
VLPAA
|
|---|
| |