179 homologs were found in PanDaTox collection
for query gene Sfri_0662 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_0746  branched-chain amino acid transport system II carrier protein  78.19 
 
 
442 aa  647    Shewanella denitrificans OS217  Bacteria  normal  0.707148  n/a   
 
 
-
 
NC_008345  Sfri_0662  branched-chain amino acid transport system II carrier protein  100 
 
 
438 aa  858    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0769  branched-chain amino acid transport system II carrier protein  73.49 
 
 
443 aa  633  1e-180  Shewanella loihica PV-4  Bacteria  normal  0.949455  normal  0.0746903 
 
 
-
 
NC_011663  Sbal223_3450  branched-chain amino acid transport system II carrier protein  69.41 
 
 
470 aa  615  1e-175  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3644  branched-chain amino acid transport system II carrier protein  69.85 
 
 
470 aa  615  1e-175  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0842  branched-chain amino acid transport system II carrier protein  69.41 
 
 
466 aa  616  1e-175  Shewanella baltica OS155  Bacteria  normal  0.809943  n/a   
 
 
-
 
NC_009665  Shew185_3525  branched-chain amino acid transport system II carrier protein  69.85 
 
 
470 aa  615  1e-175  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2740  branched-chain amino acid transport system II carrier protein BrnQ  71 
 
 
441 aa  605  9.999999999999999e-173  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0804  branched-chain amino acid transport system II carrier protein  70.64 
 
 
448 aa  602  1.0000000000000001e-171  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0892  branched-chain amino acid transport system II carrier protein  72.33 
 
 
443 aa  597  1e-169  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0108632 
 
 
-
 
NC_010506  Swoo_0894  branched-chain amino acid transport system II carrier protein  69.77 
 
 
449 aa  584  1e-166  Shewanella woodyi ATCC 51908  Bacteria  normal  0.45318  normal 
 
 
-
 
NC_008577  Shewana3_3332  branched-chain amino acid transport system II carrier protein  72.28 
 
 
467 aa  572  1.0000000000000001e-162  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0949  branched-chain amino acid transport system II carrier protein BrnQ  72.28 
 
 
462 aa  565  1e-160  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0794  branched-chain amino acid transport system II carrier protein  71.94 
 
 
467 aa  566  1e-160  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3229  branched-chain amino acid transport system II carrier protein  71.94 
 
 
467 aa  566  1e-160  Shewanella sp. MR-7  Bacteria  normal  0.980889  normal 
 
 
-
 
NC_009438  Sputcn32_0889  branched-chain amino acid transport system II carrier protein  70.95 
 
 
467 aa  568  1e-160  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00954  hypothetical protein  51.14 
 
 
473 aa  419  1e-116  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_004443  branched-chain amino acid transport system carrier protein  52.09 
 
 
436 aa  417  9.999999999999999e-116  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0560  branched chain amino acid transport system II carrier protein  48.97 
 
 
437 aa  409  1e-113  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0193  branched chain amino acid transport system II carrier protein  52.42 
 
 
437 aa  407  1.0000000000000001e-112  Vibrio cholerae O395  Bacteria  normal  0.820087  n/a   
 
 
-
 
NC_008463  PA14_43920  branched chain amino acid transporter  45.68 
 
 
437 aa  357  1.9999999999999998e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3684  branched chain amino acid ABC transporter  45.45 
 
 
548 aa  355  1e-96  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1619  branched chain amino acid ABC transporter carrier protein  42.95 
 
 
437 aa  337  1.9999999999999998e-91  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.758971  normal  0.0622571 
 
 
-
 
NC_009439  Pmen_2498  branched-chain amino acid transport system II carrier protein  46.28 
 
 
437 aa  335  1e-90  Pseudomonas mendocina ymp  Bacteria  normal  0.331302  normal  0.203368 
 
 
-
 
NC_004578  PSPTO_2206  branched-chain amino acid transport system II carrier protein  42.05 
 
 
437 aa  322  8e-87  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_39050  branched-chain amino acid transport carrier  41.46 
 
 
437 aa  321  1.9999999999999998e-86  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.379222  normal  0.362487 
 
 
-
 
NC_010498  EcSMS35_0432  branched-chain amino acid transport system II carrier protein  40.91 
 
 
439 aa  321  1.9999999999999998e-86  Escherichia coli SMS-3-5  Bacteria  normal  0.922576  normal 
 
 
-
 
NC_012880  Dd703_2911  branched-chain amino acid transport system II carrier protein  41.08 
 
 
439 aa  320  3e-86  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00349  predicted branched chain amino acid transporter (LIV-II)  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3208  branched-chain amino acid transport system II carrier protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3232  branched-chain amino acid transport system II carrier protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli ATCC 8739  Bacteria  normal  0.686325  unclonable  0.0000000117832 
 
 
-
 
NC_012892  B21_00353  hypothetical protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0478  branched-chain amino acid transport system II carrier protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.709941  normal 
 
 
-
 
NC_010658  SbBS512_E0320  branched-chain amino acid transport system II carrier protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Shigella boydii CDC 3083-94  Bacteria  normal  0.259108  n/a   
 
 
-
 
NC_009800  EcHS_A0471  branched-chain amino acid transport system II carrier protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0431  branched-chain amino acid transport system II carrier protein  40.68 
 
 
439 aa  320  3.9999999999999996e-86  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0438  branched-chain amino acid transport system II carrier protein  41.59 
 
 
439 aa  317  2e-85  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.54427  normal 
 
 
-
 
NC_009656  PSPA7_3325  branched-chain amino acid transport system II carrier protein  41.23 
 
 
437 aa  318  2e-85  Pseudomonas aeruginosa PA7  Bacteria  normal  0.106259  n/a   
 
 
-
 
NC_012912  Dd1591_3102  branched-chain amino acid transport system II carrier protein  41.53 
 
 
440 aa  317  3e-85  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0438  branched-chain amino acid transport system II carrier protein  41.59 
 
 
439 aa  316  4e-85  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3283  branched-chain amino acid transport system II carrier protein  42.09 
 
 
439 aa  317  4e-85  Yersinia pestis Angola  Bacteria  normal  normal  0.0308168 
 
 
-
 
NC_011080  SNSL254_A0444  branched-chain amino acid transport system II carrier protein  41.36 
 
 
439 aa  316  5e-85  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3273  branched-chain amino acid transport system II carrier protein  42.09 
 
 
439 aa  316  5e-85  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0457  branched-chain amino acid transport system II carrier protein  41.36 
 
 
439 aa  316  5e-85  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0499  branched-chain amino acid transport system II carrier protein  41.36 
 
 
439 aa  316  5e-85  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_3133  branched-chain amino acid transport system II carrier protein  42.09 
 
 
439 aa  316  5e-85  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2015  branched chain amino acid ABC transporter carrier protein  41.72 
 
 
437 aa  316  6e-85  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.453737  normal  0.890863 
 
 
-
 
NC_012917  PC1_1012  branched-chain amino acid transport system II carrier protein  40.72 
 
 
439 aa  315  8e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3507  branched-chain amino acid transport system II carrier protein  40.91 
 
 
437 aa  314  1.9999999999999998e-84  Pseudomonas putida W619  Bacteria  normal  normal  0.717571 
 
 
-
 
NC_010002  Daci_5360  branched-chain amino acid transport system II carrier protein  44.62 
 
 
437 aa  313  4.999999999999999e-84  Delftia acidovorans SPH-1  Bacteria  normal  0.256076  normal 
 
 
-
 
NC_010322  PputGB1_3755  branched-chain amino acid transport system II carrier protein  41.14 
 
 
437 aa  313  4.999999999999999e-84  Pseudomonas putida GB-1  Bacteria  normal  0.642485  normal 
 
 
-
 
NC_002947  PP_4184  branched chain amino acid ABC transporter carrier protein  41.14 
 
 
437 aa  312  7.999999999999999e-84  Pseudomonas putida KT2440  Bacteria  normal  0.579709  normal 
 
 
-
 
NC_013421  Pecwa_3298  branched-chain amino acid transport system II carrier protein  42.28 
 
 
439 aa  311  1e-83  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1670  branched-chain amino acid transport system II carrier protein  41.14 
 
 
437 aa  311  1e-83  Pseudomonas putida F1  Bacteria  normal  0.129788  normal 
 
 
-
 
NC_011772  BCG9842_B3254  branched-chain amino acid transport system II carrier protein  40.13 
 
 
450 aa  309  5e-83  Bacillus cereus G9842  Bacteria  normal  0.104949  normal  0.486135 
 
 
-
 
NC_011725  BCB4264_A2053  branched-chain amino acid transport system II carrier protein  40.36 
 
 
450 aa  309  6.999999999999999e-83  Bacillus cereus B4264  Bacteria  normal  0.087988  n/a   
 
 
-
 
NC_009832  Spro_3953  branched-chain amino acid transport system II carrier protein  41.04 
 
 
439 aa  309  8e-83  Serratia proteamaculans 568  Bacteria  normal  0.726579  normal 
 
 
-
 
NC_009674  Bcer98_1551  branched-chain amino acid transport system II carrier protein  39.69 
 
 
465 aa  308  9e-83  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.818102  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1913  branched-chain amino acid transport system II carrier protein  39.96 
 
 
450 aa  308  1.0000000000000001e-82  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0827616  n/a   
 
 
-
 
NC_011658  BCAH187_A2163  branched-chain amino acid transport system II carrier protein  39.91 
 
 
450 aa  308  2.0000000000000002e-82  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1751  branched-chain amino acid transport system carrier protein  41.5 
 
 
452 aa  305  1.0000000000000001e-81  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  unclonable  1.04073e-17  n/a   
 
 
-
 
NC_006274  BCZK1729  branched-chain amino acid transport system carrier protein  41.5 
 
 
452 aa  305  1.0000000000000001e-81  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000468898  n/a   
 
 
-
 
NC_009436  Ent638_0869  branched-chain amino acid transport system II carrier protein  41.18 
 
 
439 aa  305  1.0000000000000001e-81  Enterobacter sp. 638  Bacteria  normal  0.978124  normal 
 
 
-
 
NC_009832  Spro_1045  branched-chain amino acid transport system II carrier protein  42.79 
 
 
439 aa  304  2.0000000000000002e-81  Serratia proteamaculans 568  Bacteria  normal  0.864553  normal  0.21687 
 
 
-
 
NC_006274  BCZK1869  branched-chain amino acid transport system carrier protein  40.58 
 
 
448 aa  301  1e-80  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2095  branched-chain amino acid transport system II carrier protein  40.58 
 
 
450 aa  301  2e-80  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS1916  branched-chain amino acid transport system II carrier protein  40.58 
 
 
448 aa  301  2e-80  Bacillus anthracis str. Sterne  Bacteria  normal  0.377142  n/a   
 
 
-
 
NC_005957  BT9727_1878  branched-chain amino acid transport system carrier protein  40.36 
 
 
448 aa  300  2e-80  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.343185  n/a   
 
 
-
 
NC_007530  GBAA_2063  branched chain amino acid ABC transporter carrier protein  40.58 
 
 
445 aa  301  2e-80  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1773  branched-chain amino acid transport system II carrier protein  41.41 
 
 
452 aa  300  5e-80  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.00000130057  n/a   
 
 
-
 
NC_011658  BCAH187_A1603  branched-chain amino acid transport system II carrier protein  41.82 
 
 
451 aa  298  1e-79  Bacillus cereus AH187  Bacteria  hitchhiker  0.000000188549  n/a   
 
 
-
 
NC_011773  BCAH820_1945  branched-chain amino acid transport system II carrier protein  41.5 
 
 
452 aa  297  2e-79  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.15478e-28 
 
 
-
 
NC_009674  Bcer98_1161  branched-chain amino acid transport system II carrier protein  40.78 
 
 
451 aa  296  5e-79  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.328055  n/a   
 
 
-
 
NC_011773  BCAH820_1533  branched-chain amino acid transport system II carrier protein  41.53 
 
 
451 aa  296  6e-79  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.93507e-19 
 
 
-
 
NC_006274  BCZK1323  branched-chain amino acid transport protein  41.53 
 
 
451 aa  295  7e-79  Bacillus cereus E33L  Bacteria  decreased coverage  0.00120773  n/a   
 
 
-
 
NC_005957  BT9727_1324  branched-chain amino acid transport protein  41.53 
 
 
451 aa  295  8e-79  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000000172075  n/a   
 
 
-
 
NC_011772  BCG9842_B3847  branched-chain amino acid transport system II carrier protein  41.76 
 
 
448 aa  293  5e-78  Bacillus cereus G9842  Bacteria  hitchhiker  0.00000203183  hitchhiker  0.00000000239284 
 
 
-
 
NC_005945  BAS1350  branched-chain amino acid transport system II carrier protein  41.3 
 
 
451 aa  293  5e-78  Bacillus anthracis str. Sterne  Bacteria  normal  0.0128918  n/a   
 
 
-
 
NC_007530  GBAA_1459  branched chain amino acid ABC transporter carrier protein  41.3 
 
 
451 aa  293  5e-78  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.210353  n/a   
 
 
-
 
NC_011725  BCB4264_A1497  branched-chain amino acid transport system II carrier protein  41.45 
 
 
451 aa  292  8e-78  Bacillus cereus B4264  Bacteria  unclonable  0.0000870089  n/a   
 
 
-
 
NC_003909  BCE_1565  branched-chain amino acid transport system II carrier protein  41.36 
 
 
451 aa  290  4e-77  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00000310033  n/a   
 
 
-
 
NC_011773  BCAH820_3153  branched-chain amino acid transport system II carrier protein  39.55 
 
 
450 aa  290  5.0000000000000004e-77  Bacillus cereus AH820  Bacteria  n/a    normal  0.611345 
 
 
-
 
NC_003909  BCE_1994  branched-chain amino acid transport system II carrier protein  41.39 
 
 
452 aa  289  6e-77  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000216802  n/a   
 
 
-
 
NC_011658  BCAH187_A2016  branched-chain amino acid transport system II carrier protein  41.39 
 
 
452 aa  289  8e-77  Bacillus cereus AH187  Bacteria  unclonable  0.0000000186213  n/a   
 
 
-
 
NC_005945  BAS2920  branched-chain amino acid transport system II carrier protein  39.55 
 
 
450 aa  288  1e-76  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3142  branched chain amino acid ABC transporter carrier protein  39.55 
 
 
450 aa  288  1e-76  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.569946  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1365  branched-chain amino acid transport system II carrier protein  39.45 
 
 
451 aa  288  1e-76  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_013457  VEA_000813  branched-chain amino acid transport system carrier protein  38.39 
 
 
436 aa  288  2e-76  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3188  branched-chain amino acid transport system II carrier protein  37.7 
 
 
436 aa  284  2.0000000000000002e-75  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.00000000414074  n/a   
 
 
-
 
NC_011725  BCB4264_A1915  branched-chain amino acid transport system II carrier protein  40.91 
 
 
452 aa  284  3.0000000000000004e-75  Bacillus cereus B4264  Bacteria  normal  0.0189448  n/a   
 
 
-
 
NC_011772  BCG9842_B3429  branched-chain amino acid transport system II carrier protein  40.91 
 
 
452 aa  284  3.0000000000000004e-75  Bacillus cereus G9842  Bacteria  hitchhiker  0.000169589  hitchhiker  0.000000128434 
 
 
-
 
NC_009784  VIBHAR_06721  hypothetical protein  38.31 
 
 
436 aa  283  5.000000000000001e-75  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_3237  branched-chain amino acid transport system II carrier protein  39.25 
 
 
443 aa  281  1e-74  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.188718  n/a   
 
 
-
 
NC_005957  BT9727_2898  branched-chain amino acid transport system carrier protein  38.44 
 
 
450 aa  277  2e-73  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00345664  n/a   
 
 
-
 
NC_009674  Bcer98_0655  branched-chain amino acid transport system II carrier protein  38.07 
 
 
438 aa  275  1.0000000000000001e-72  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.474851  n/a   
 
 
-
 
NC_003909  BCE_2133  branched-chain amino acid transport system II carrier protein  43.66 
 
 
360 aa  274  2.0000000000000002e-72  Bacillus cereus ATCC 10987  Bacteria  normal  0.773417  n/a   
 
 
-
 
NC_005945  BAS4445  branched-chain amino acid transport system II carrier protein  38.83 
 
 
441 aa  268  1e-70  Bacillus anthracis str. Sterne  Bacteria  normal  0.36166  n/a   
 
 
-
 
NC_007530  GBAA_4790  branched chain amino acid ABC transporter carrier protein  38.83 
 
 
441 aa  268  1e-70  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4660  branched-chain amino acid transport system II carrier protein  38.83 
 
 
441 aa  267  2e-70  Bacillus cereus B4264  Bacteria  normal  0.604573  n/a   
 
 
-
 
NC_011658  BCAH187_A0966  branched-chain amino acid transport system II carrier protein  36.78 
 
 
438 aa  268  2e-70  Bacillus cereus AH187  Bacteria  unclonable  0.0000000062732  n/a   
 
 
-
 
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