| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3507 |
|---|
| Symbol | |
|---|
| ID | 6112465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 3865749 |
|---|
| End bp | 3867062 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641623294 |
|---|
| Product | branched-chain amino acid transport system II carrier protein |
|---|
| Protein accession | YP_001750359 |
|---|
| Protein GI | 170722671 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1114] Branched-chain amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.717571 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTT TAAAAGGCCA GGATATCCTG GCGCTTGGCT TTATGACGTT TGCGCTTTTT
GTGGGCGCTG GCAATATCAT CTTCCCGCCC ATCGTCGGTC TGCAGTCCGG GCCGCATGTC
TGGATGGCCG CTCTGGGCTT CCTGGTTACG GCTGTGGGCC TGCCGGTTAT CACCGTGGTC
GCACTGGCCA AGGTCGGTGG TGGCATGGAT GCGCTCAGCA GCCCGATCGG CAAGTTCTTC
GGTGGCCTGT TGGCGGCTGT GTGCTACCTG TCGGTCGGCC CGCTGTTCGC TACCCCGCGC
ACCGCGACCG TGTCGTTCGA AGTGGGTGTG GCACCGCTCA CCGGCGAAAG CCCGTTGGCG
TTGTTCCTCT ACAGCCTGGT GTACTTCATC GTGGTACTGG CCGTGTCCAT GTATCCGGGC
AAGTTGCTCG ATACCGTGGG CCGTTTCCTC GCGCCGCTGA AGATTATCGC CCTGGCGGTA
CTTGGCATCG CTGCGTTCGC GCTGCCTGCC GGCACCATTG GTGAAGCACA GCCTGCCTAT
GCAGCTGCGG CCTTCTCCAA GGGCTTCTCC GATGGCTACC TGACCATGGA CACCCTGGGT
GCGCTGGTCT TCGGTATCGT CATCGTCAAT GCCATCCGTT CGCGGGGTGT CGAGTCGCCG
AAGCTGATCA CCCGCTATGC CATCATTGCC GGCCTGATTG CCGGTGTGGG CCTGGCGCTG
GTGTACATCA GCCTGTTCCG GCTGGGGGCC AGCAGCCATG AGATCGCGGC TGGCGCCACC
AACGGTGCAG CGGTATTGCA CGCCTACGTA CAGCACACCT TCGGTTCGCT TGGCAGCGGT
TTCCTGGCGG TACTGATCGC GCTGGCCTGT CTGGTGACTG CCGTAGGCCT GACTTGCGCA
TGCGCCGAGT ACTTCAGCCA GATCCTGCCG CTGTCGTACC GTGCACTGGT GGTGATCCTG
GCGGGCTTCT CGCTGCTGAT TTCCAACCTG GGCCTGACCA AGCTGATCAT GTTCTCGATC
CCGGTACTGA CCGCCATCTA CCCACCGTGC ATCGTGGTGG TAGGCCTGAG CTTCGTCAAT
GACCTGTGGA ATTCGCCAAC ACGTATCATG GCGCCGGTCA TGCTAGTGTC GCTGTTGTTC
GGCATGGTTG ATGCGATCAA GGGCAGCAGC ATTGCCCACG TTTTGCCGGA CTTCATGGCA
CACCTGCCGC TGAGCGATCA GGGCCTGGCC TGGCTGGTGC CGTCGGTGGT GACACTGATG
GCGGCTGTGG CGTGCGACCG TATGCTTGGC AAGCCGCGTG AAGCGCTGGC CTGA
|
|---|
| Protein sequence | MKVLKGQDIL ALGFMTFALF VGAGNIIFPP IVGLQSGPHV WMAALGFLVT AVGLPVITVV
ALAKVGGGMD ALSSPIGKFF GGLLAAVCYL SVGPLFATPR TATVSFEVGV APLTGESPLA
LFLYSLVYFI VVLAVSMYPG KLLDTVGRFL APLKIIALAV LGIAAFALPA GTIGEAQPAY
AAAAFSKGFS DGYLTMDTLG ALVFGIVIVN AIRSRGVESP KLITRYAIIA GLIAGVGLAL
VYISLFRLGA SSHEIAAGAT NGAAVLHAYV QHTFGSLGSG FLAVLIALAC LVTAVGLTCA
CAEYFSQILP LSYRALVVIL AGFSLLISNL GLTKLIMFSI PVLTAIYPPC IVVVGLSFVN
DLWNSPTRIM APVMLVSLLF GMVDAIKGSS IAHVLPDFMA HLPLSDQGLA WLVPSVVTLM
AAVACDRMLG KPREALA
|
|---|
| |