| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0892 |
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| Symbol | |
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| ID | 5609764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1064519 |
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| End bp | 1065850 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931740 |
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| Product | branched-chain amino acid transport system II carrier protein |
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| Protein accession | YP_001472631 |
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| Protein GI | 157374031 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1114] Branched-chain amino acid permeases |
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| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0108632 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAAAATA AACAGATGAC TATGGGTGAT ACCTTAGGGT TAGGGTTTAT GACCTTCGCT
TTCTTTTTAG GAGCGGGTAA CCTGATTTTT CCACCTCTGG CCGGCTTCCT GGCTGGTGAG
AATATGACAC TGGCCATGAT TGGCTTCCTG ATCACCGCAG TGACCTTACC TCTGATAACG
CTGGTTGCCG TAGCGAAAGC AAACGGTAAA GTGATGGGGC TTTTGCCAGC GTTCGCCGCC
ACCGCTTTTG CCGTCGCTAT CTATATCGTT ATAGGTCCTG CTTTTGCCGC TCCTCGTGCC
GGGCTTGTCG CCTACGAGAT GGGCTTTAAG CCCTTCCTGG AAGATAGTAG CGCGACCTTT
ATGGTGGCAG GGATCACTCT GAATGTATCT CAACTGATCT ATTCGGTGAT TTTCTTTGGT
GGCGCCATGT TACTCTCGCT CTACCCGGGT AAGTTGCTCG ATAGTGTCGG TAAGGTGCTG
ACCCCTATCA TGCTGATACT GCTGGTCGGT TTAGCTGCTT CTGTATTCCT CTTACCCGGC
GCTGAAGTGG GTCAAGCCGT TGGTGATTAT CAGTCGAGCC CGTTAACCAA AGGGATTCTG
GAAGGTTACA ACACCATGGA TACTCTGGCG TCGCTGATCT TCGGTATGCT GATCATCGAT
ATCCTTCGCA GGAAAGGGGT GAGTGATAGT AAGCAGCAGA CTAAGTATCT GATAAGAGCT
GCATTAATTG CCGCGGCCGG ACTCGCATTC GTCTATATCT CACTTTTTTA TCTTGGTGCG
ACAGCCGGTG ATATCGCCGT TGGTGCCGAT AATGGTGGTG TGATCTTAAC CAATTATGTG
AATCATGAGT TTGGCAGCCT GGGGCAGATA CTACTGGCTG CCGTAGTTAC TCTGGCTTGT
CTGACGACGG TTATCGGCCT GGTTACTGCC TGCTCCGAGT TCTTTAATGA GTTATTTACC
AAGATCTCTT ACCGTAAATT TGTCATTATC ATCAGTGTGA TATGTGCAAC CGTTGCTAAT
GTTGGTTTGT CACAACTGAT CAGTATCAGT GTGCCTGTAC TCTATACCAT CTACCCGGTG
GCTATCGCTT TGGTTGCCGT CACCTTCTTG ACCGAGAAGT TCCCAATGCC GGAATTTTCT
CATCGTATCG TGTTGAGCGT TGCTCTGTTA TTCGGTGTGA TCGATGGTCT GAAGGCTGCG
GGTTTCGATA TCACTCTGAC CGACTTTATG CCTCTGCATA ATGAAGGAAT GGCCTGGTTA
CTGCCGACCG CTTTGACTAT CCTGGCTTGT CTGTTCATTA AAAAGCCAAA GTCTGAGCCA
CTGTTGAACT GA
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| Protein sequence | MQNKQMTMGD TLGLGFMTFA FFLGAGNLIF PPLAGFLAGE NMTLAMIGFL ITAVTLPLIT
LVAVAKANGK VMGLLPAFAA TAFAVAIYIV IGPAFAAPRA GLVAYEMGFK PFLEDSSATF
MVAGITLNVS QLIYSVIFFG GAMLLSLYPG KLLDSVGKVL TPIMLILLVG LAASVFLLPG
AEVGQAVGDY QSSPLTKGIL EGYNTMDTLA SLIFGMLIID ILRRKGVSDS KQQTKYLIRA
ALIAAAGLAF VYISLFYLGA TAGDIAVGAD NGGVILTNYV NHEFGSLGQI LLAAVVTLAC
LTTVIGLVTA CSEFFNELFT KISYRKFVII ISVICATVAN VGLSQLISIS VPVLYTIYPV
AIALVAVTFL TEKFPMPEFS HRIVLSVALL FGVIDGLKAA GFDITLTDFM PLHNEGMAWL
LPTALTILAC LFIKKPKSEP LLN
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