| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0662 |
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| Symbol | |
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| ID | 4278183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 772058 |
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| End bp | 773374 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133419 |
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| Product | branched-chain amino acid transport system II carrier protein |
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| Protein accession | YP_749360 |
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| Protein GI | 114561847 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1114] Branched-chain amino acid permeases |
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| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGTGA CTGATACGCT AGGGTTAGGG TTTATGACCT TTGCGTTTTT TTTAGGTGCG
GGTAACTTAA TTTTTCCACC TTTTGCTGGC ATGCTTGCTG GCGAGAATAT GTCTTTTGCG
ATGTTCGGTT TCTTAATTAC CGCAGTGGGT ATGCCACTTA TAGGCTTAAT TGCCGTTGCT
AAAGCTAACG GTAAAGTGAT GGCGTTATTA CCTGCGTTTG CGGCTACAGC ATTAGCCATT
GCGATTTATA TCATCATTGG CCCAGCATTT GCCGCCCCAC GTACTGCATT GGTGGCATTT
GAAATTGGCG CAAGACCTTT TATTAGTAAT CCCGATGCGT TAATGATGCT CGGCGGCAAA
GAGTTCAGTA TTGCGCAACT TATTTATACT TTGGTGTTTT TCTCCATTGT GATGTTTTTA
TCTTTATTTC CAGGAAAATT ACTCGATAGC GTTGGTAAAA TACTTACGCC TGTATTGATT
CTACTATTGG TGGGATTAGC CAGTTCTGTG ATTATTCTTC CTGGCGCAGA GGTGAACCTG
CCGGTTGGTG AATATATTAA TAGTCCATTA ACCAAAGGGA TTATTGAAGG TTATAACACC
ATGGATACCT TGGCATCATT GATGTTTGGT ATGCTAATCA TCGATTTGTT GCGCAAAAAA
GGTGTTAACG ATGCGGCCGA TCAAACTAAG TATTTAGTTC GTGCAGCATT TATTGCTGCT
GGTGGTTTAG CATTTGTGTA TGTGTCGTTA TTTTATCTTG GTGCTTCAGC AGGTGATTTT
GCTATTGGTG CCGACAATGG TGGCCAAATT TTAACAAACT ATGTGACTCA TCATTTTGGC
AATATTGGCA CCTTAATGCT GTCAACGGTT GTGACGCTTG CTTGCTTAAC GACTGCGGTT
GGTTTAGTCA CCGCTTGTTC TGAATTTTTT AATGAATTAA TGCCTAGATT ATCGTACAAG
TTGCTGGTGG TTTTATTAAG TGTGATTTGT GCCACTGTCG CTAACGTAGG TTTATCGCAA
TTAATAAGCA TCAGTATTCC TGTGTTAATG ACGATTTACC CAGTTGCGAT AGCATTGGTA
TTGGTGACTT TTTTGACAGA ACGCTTTGCT AGACCGGCAT TTTCGCATCG TGTCGTGCTG
AGTGTGGCAT TATTTTTCGG TATTTTTGAT GGGTTACAAA CGGCAGGCAT GGATATGAGC
TTCCTAGACT TTATGCCACT GCATGTAGAG GGGATGGCTT GGTTGCTACC TACTGCGTTA
ACGGCAATTG TGTGTTTGTT TATACCCAAA AATCTGGATC AAAAAGCGGA TGCTTAA
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| Protein sequence | MSVTDTLGLG FMTFAFFLGA GNLIFPPFAG MLAGENMSFA MFGFLITAVG MPLIGLIAVA
KANGKVMALL PAFAATALAI AIYIIIGPAF AAPRTALVAF EIGARPFISN PDALMMLGGK
EFSIAQLIYT LVFFSIVMFL SLFPGKLLDS VGKILTPVLI LLLVGLASSV IILPGAEVNL
PVGEYINSPL TKGIIEGYNT MDTLASLMFG MLIIDLLRKK GVNDAADQTK YLVRAAFIAA
GGLAFVYVSL FYLGASAGDF AIGADNGGQI LTNYVTHHFG NIGTLMLSTV VTLACLTTAV
GLVTACSEFF NELMPRLSYK LLVVLLSVIC ATVANVGLSQ LISISIPVLM TIYPVAIALV
LVTFLTERFA RPAFSHRVVL SVALFFGIFD GLQTAGMDMS FLDFMPLHVE GMAWLLPTAL
TAIVCLFIPK NLDQKADA
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