| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2740 |
|---|
| Symbol | |
|---|
| ID | 4604987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3273768 |
|---|
| End bp | 3275093 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639782151 |
|---|
| Product | branched-chain amino acid transport system II carrier protein BrnQ |
|---|
| Protein accession | YP_928612 |
|---|
| Protein GI | 119775872 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1114] Branched-chain amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAAAACA AGCAGATGAG TTTCTCAGAC ACCTTAAGTC TGGGCTTTAT GACTTTTGCG
TTCTTTTTGG GGGCCGGTAA CCTGATATTC CCGCCATTCG CGGGCATGCT TGCCGGTGAG
AACATGCCAT TGGCCATGAT GGGCTTTTTG GTGACTGCCG TGGGCATGCC GTTGGTGGGT
TTGATTGCTG TGGCCAAAAC CCAGGGCAGG GTGATGGCGT ATCTGCCTGC TGTGGCTGCT
ACGGCGTTGG CTGTGGCCAT TTACATCATC ATTGGCCCTG CCTTTGCGGC GCCCCGCACC
GGTCTGGTGG CCTTTGAAAT TGGCGCCAAA CCCTTCCTCG GTGATACCAG TGCTGTATTG
GCGCTTGGCA GTATCAGCCT CAATGTAGCT CAGCTTATCT TTACCCTTGG GTTCTTTGCG
GTGACCATGC TGCTGGCCCT CTTCCCCGGT AAATTGATGG ACAGTGTGGG TAAAGTACTG
ACCCCTGTGC TCATGGTACT GCTGTTGTCG CTGGCCATTT CAGTAATCAT GCTGCCATCG
GGTGACACTT CAGCACCCGT GGGGGATTAT GCGTCCAGCC CGCTTATCAA GGGGGTGATT
GAAGGCTACA ACACCATGGA TACTCTGGCG TCGCTGATGT TCGGTATGCT GATTATCGAC
CTTTTACGCA AGAAAGGGGT TGATGCCCCT GCGGACCAAA CCCGTGCACT GGTGCGTGCG
GCCTTTATCG CCGCATCCGG TTTGGCCTTT GTGTATATTT CGCTGTTTTT CCTCGGAGCC
ACTGCAGGGG ATATCGCTCA GGGTGCCGAA AATGGTGGTC AAATTCTGAC CCGTTATGTC
GACCGTGAGT TTGGGACACT GGGTGCGCTG CTGTTGTCTA CCGTGGTGTC TCTGGCATGT
TTGACCACGG CTGTGGGTTT GGTGAGTGCC TGTTCTGATT ATTTCAATGA GCTGTTTCCA
CGTATTAAAT ACCGTCAGTT CGTTATCCTG TTTTCCATCA TCTGCGCCGT AGTGGCCAAC
GTCGGGCTGA CTCAGCTTAT CAGCGTAAGT ATTCCTGTGC TGGTGAGTGT TTATCCCGTG
GTGATAGCCT TGGTGGCCGT GACCTTTATG ACCCAGTACC TGCCCAACCC CAAAGTCAGC
CATCGACTGG TGTTGGCGGT GGCGCTGCTT TTTGGTGCCA TCGATGGCCT CAAGGCTGCC
GGGGTGAATA TGGAGTCTCT GAGCTTTATG CCGCTTTATG CCGAAGGCAT GGCCTGGTTG
TTGCCAACCG CAGTGACCAT GGTAATCTGC CTCTTTATCG GTAAGCGCGC ACCGGCTGCG
GCCTGA
|
|---|
| Protein sequence | MQNKQMSFSD TLSLGFMTFA FFLGAGNLIF PPFAGMLAGE NMPLAMMGFL VTAVGMPLVG
LIAVAKTQGR VMAYLPAVAA TALAVAIYII IGPAFAAPRT GLVAFEIGAK PFLGDTSAVL
ALGSISLNVA QLIFTLGFFA VTMLLALFPG KLMDSVGKVL TPVLMVLLLS LAISVIMLPS
GDTSAPVGDY ASSPLIKGVI EGYNTMDTLA SLMFGMLIID LLRKKGVDAP ADQTRALVRA
AFIAASGLAF VYISLFFLGA TAGDIAQGAE NGGQILTRYV DREFGTLGAL LLSTVVSLAC
LTTAVGLVSA CSDYFNELFP RIKYRQFVIL FSIICAVVAN VGLTQLISVS IPVLVSVYPV
VIALVAVTFM TQYLPNPKVS HRLVLAVALL FGAIDGLKAA GVNMESLSFM PLYAEGMAWL
LPTAVTMVIC LFIGKRAPAA A
|
|---|
| |