| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3755 |
|---|
| Symbol | |
|---|
| ID | 5871548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4177558 |
|---|
| End bp | 4178871 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641548877 |
|---|
| Product | branched-chain amino acid transport system II carrier protein |
|---|
| Protein accession | YP_001669981 |
|---|
| Protein GI | 167034750 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1114] Branched-chain amino acid permeases |
|---|
| TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.642485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTC TCAAAGGCCA GGATATCCTG GCGCTTGGCT TTATGACGTT TGCGCTTTTC
GTTGGCGCAG GCAATATCAT CTTCCCGCCT ATCGTCGGTC TGCAGTCTGG TCCGCACGTG
TGGATGGCAG CCCTGGGCTT CCTGGTCACT GCCGTGGGCC TGCCAGTCAT CACCGTGGTC
GCGCTGGCCA AGGTCGGTGG CGGCATGGAT GCCCTGAGCA GCCCGATCGG CAAGTTCTTC
GGCGGCCTGC TGGCAGCCGT GTGCTACCTG TCGGTCGGTC CGCTGTTCGC CACCCCGCGC
ACCGCGACCG TGTCGTTCGA AGTGGGTGTT GCACCGCTGA CCGGTGAAAG CCCGCTGGCG
CTGTTCATCT ACAGCCTGGT GTACTTCGCC GTGGTACTGG CCGTGTCCAT GTACCCTGGC
AAGTTGCTCG ACACCGTGGG CCGCTTCCTG GCGCCGTTGA AGATCATCGC TCTGGCCGTG
CTGGGCATCG CTGCTTTCGC GCTGCCGGCC GGGACCATTG GTGAGGCACA GCCTGCCTAT
GCTGCGGCTG CGTTCTCCAA GGGCTTCTCC GATGGCTACC TGACCATGGA CACCCTGGGT
GCCTTGGTGT TCGGTATCGT CATCGTCAAC GCCATCCGCT CGCGCGGTGT CGAGTCGCCG
AAGTTGATCA CTCGCTACGC CATCATCGCC GGCCTGATCG CAGGTGTTGG CCTGGCGCTG
GTGTATGTCA GCTTGTTCCG TCTGGGTGCC GGCAGCCATG ACATCGCGGC TGATGCCACC
AACGGTGCTG CGGTTCTGCA TGCCTACGTG CAGCACACCT TCGGCTCGCT GGGCAGCGGC
TTCCTGGCCG TGTTGATCGC ACTGGCCTGT CTGGTGACCG CGGTTGGCCT GACCTGTGCC
TGCGCCGAGT ATTTCAGCCA GATCCTGCCG CTGTCGTACC GTGCATTGGT GGTGATCCTG
GCCGGCTTCT CGTTGCTGAT CTCCAACCTT GGCCTGACCA AGCTGATCAT GTTCTCGATC
CCGGTGCTTA CCGCCATTTA CCCGCCTTGC ATCGTGGTGG TTGGCCTGAG CTTCGTGAAG
GACCTGTGGA ACTCGCCGAC CCGCATCCTG GCGCCGGTGA TGCTGGTGTC GCTGGTGTTC
GGCATGGTTG ACGCAATCAA GGGCAGCAGC ATTGCCCATG TGCTGCCGGA CTTCATGGCG
CATCTGCCGT TGAGCGACCA GGGCCTGGCC TGGCTTGTGC CTTCCGTGGT GACCCTGGTT
GGCGCCGTGG CTTGCGACCG CATGCTCGGC AAGCCGCGCG AGGCGCTGGC CTGA
|
|---|
| Protein sequence | MKVLKGQDIL ALGFMTFALF VGAGNIIFPP IVGLQSGPHV WMAALGFLVT AVGLPVITVV
ALAKVGGGMD ALSSPIGKFF GGLLAAVCYL SVGPLFATPR TATVSFEVGV APLTGESPLA
LFIYSLVYFA VVLAVSMYPG KLLDTVGRFL APLKIIALAV LGIAAFALPA GTIGEAQPAY
AAAAFSKGFS DGYLTMDTLG ALVFGIVIVN AIRSRGVESP KLITRYAIIA GLIAGVGLAL
VYVSLFRLGA GSHDIAADAT NGAAVLHAYV QHTFGSLGSG FLAVLIALAC LVTAVGLTCA
CAEYFSQILP LSYRALVVIL AGFSLLISNL GLTKLIMFSI PVLTAIYPPC IVVVGLSFVK
DLWNSPTRIL APVMLVSLVF GMVDAIKGSS IAHVLPDFMA HLPLSDQGLA WLVPSVVTLV
GAVACDRMLG KPREALA
|
|---|
| |