More than 300 homologs were found in PanDaTox collection
for query gene PC1_3049 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  86.91 
 
 
444 aa  776    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  86.91 
 
 
444 aa  776    Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  87.13 
 
 
444 aa  777    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  99.1 
 
 
445 aa  902    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  92.36 
 
 
445 aa  846    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  86.91 
 
 
444 aa  776    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  92.36 
 
 
445 aa  846    Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02410  hypothetical protein  86.91 
 
 
444 aa  776    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  86.91 
 
 
444 aa  776    Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  87.64 
 
 
445 aa  803    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  90.11 
 
 
445 aa  823    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  87.13 
 
 
444 aa  777    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  87.13 
 
 
444 aa  777    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  92.36 
 
 
445 aa  840    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  72.11 
 
 
466 aa  649    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  86.91 
 
 
444 aa  776    Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  92.36 
 
 
445 aa  846    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  87.64 
 
 
445 aa  805    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  89.66 
 
 
445 aa  825    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  87.64 
 
 
445 aa  805    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  87.64 
 
 
445 aa  805    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  87.42 
 
 
445 aa  802    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
445 aa  907    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  88.09 
 
 
445 aa  807    Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  62.67 
 
 
446 aa  562  1.0000000000000001e-159  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  61.24 
 
 
449 aa  545  1e-154  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4272  sigma-54 dependent response regulator  57.05 
 
 
457 aa  521  1e-146  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  58.37 
 
 
466 aa  517  1.0000000000000001e-145  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.56 
 
 
462 aa  513  1e-144  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  56.82 
 
 
456 aa  506  9.999999999999999e-143  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  56.82 
 
 
456 aa  506  9.999999999999999e-143  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_008781  Pnap_3376  two component, sigma54 specific, Fis family transcriptional regulator  57.56 
 
 
462 aa  502  1e-141  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.193945  normal 
 
 
-
 
NC_007498  Pcar_0498  two component response regulator  59.24 
 
 
451 aa  499  1e-140  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2786  two component, sigma54 specific, Fis family transcriptional regulator  57.47 
 
 
477 aa  501  1e-140  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  56.92 
 
 
471 aa  498  1e-140  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_002977  MCA1713  sigma-54 dependent DNA-binding response regulator  58.04 
 
 
460 aa  494  1e-139  Methylococcus capsulatus str. Bath  Bacteria  normal  0.91858  n/a   
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  56.89 
 
 
469 aa  493  9.999999999999999e-139  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_007484  Noc_0785  Fis family two component transcriptional regulator  58.31 
 
 
456 aa  493  9.999999999999999e-139  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  56.56 
 
 
457 aa  493  9.999999999999999e-139  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_2955  sigma-54 dependent DNA-binding response regulator, putative  58.41 
 
 
457 aa  490  1e-137  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2568  two component, sigma54 specific, transcriptional regulator, Fis family  58.41 
 
 
457 aa  490  1e-137  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0491002  normal 
 
 
-
 
NC_007614  Nmul_A1161  two component, sigma54 specific, Fis family transcriptional regulator  56.91 
 
 
453 aa  484  1e-135  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2494  response regulator receiver protein  55.58 
 
 
452 aa  482  1e-135  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1222  putative two component, sigma54 specific, transcriptional regulator, Fis family  55.86 
 
 
475 aa  480  1e-134  Thauera sp. MZ1T  Bacteria  normal  0.20015  n/a   
 
 
-
 
NC_007404  Tbd_2771  two component Fis family transcriptional regulator  56.21 
 
 
449 aa  473  1e-132  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.195731 
 
 
-
 
NC_007520  Tcr_2187  two component, sigma54 specific, Fis family transcriptional regulator  52.5 
 
 
456 aa  471  1.0000000000000001e-131  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  47.02 
 
 
461 aa  414  1e-114  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  47.02 
 
 
461 aa  414  1e-114  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2292  two component, sigma54 specific, Fis family transcriptional regulator  45.23 
 
 
462 aa  382  1e-105  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  44.7 
 
 
441 aa  362  5.0000000000000005e-99  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  44.47 
 
 
441 aa  360  3e-98  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  44.24 
 
 
441 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  44.75 
 
 
441 aa  358  9.999999999999999e-98  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  44.47 
 
 
441 aa  358  9.999999999999999e-98  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  44.75 
 
 
441 aa  357  1.9999999999999998e-97  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  44.75 
 
 
441 aa  357  1.9999999999999998e-97  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  44.75 
 
 
441 aa  357  1.9999999999999998e-97  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  44.75 
 
 
441 aa  357  1.9999999999999998e-97  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  44.24 
 
 
441 aa  357  2.9999999999999997e-97  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  44.85 
 
 
441 aa  357  2.9999999999999997e-97  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  44.52 
 
 
441 aa  356  3.9999999999999996e-97  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  44.52 
 
 
441 aa  355  7.999999999999999e-97  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  44.77 
 
 
441 aa  351  2e-95  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  42.51 
 
 
451 aa  348  1e-94  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2280  two component, sigma54 specific, transcriptional regulator, Fis family  41.61 
 
 
453 aa  347  2e-94  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.620123 
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  43.11 
 
 
453 aa  347  2e-94  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
NC_011830  Dhaf_0198  two component, sigma54 specific, transcriptional regulator, Fis family  39.65 
 
 
461 aa  345  8.999999999999999e-94  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  40.21 
 
 
490 aa  345  8.999999999999999e-94  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  41.7 
 
 
453 aa  345  1e-93  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  40.21 
 
 
489 aa  345  1e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  40.04 
 
 
489 aa  342  9e-93  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  40.04 
 
 
489 aa  342  9e-93  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  40.4 
 
 
460 aa  341  2e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2095  two component, sigma54 specific, transcriptional regulator, Fis family  40.17 
 
 
471 aa  339  5e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  43.35 
 
 
437 aa  338  9.999999999999999e-92  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  43.35 
 
 
437 aa  338  1.9999999999999998e-91  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  40.97 
 
 
456 aa  337  2.9999999999999997e-91  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  41.2 
 
 
464 aa  336  5e-91  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4257  two component, sigma54 specific, Fis family transcriptional regulator  40.79 
 
 
463 aa  336  5e-91  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  40.04 
 
 
467 aa  335  9e-91  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  40.13 
 
 
467 aa  335  1e-90  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.85 
 
 
461 aa  335  1e-90  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_008609  Ppro_0984  two component, sigma54 specific, Fis family transcriptional regulator  40.8 
 
 
455 aa  335  1e-90  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  42 
 
 
480 aa  333  3e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  41.71 
 
 
463 aa  333  3e-90  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  40.97 
 
 
464 aa  333  3e-90  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_009483  Gura_0085  two component, sigma-54 specific, Fis family transcriptional regulator  43.16 
 
 
452 aa  333  3e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1428  two component, sigma-54 specific, Fis family transcriptional regulator  39.74 
 
 
460 aa  333  4e-90  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  40.56 
 
 
458 aa  333  4e-90  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2034  two component, sigma54 specific, Fis family transcriptional regulator  40.83 
 
 
449 aa  332  6e-90  Geobacter metallireducens GS-15  Bacteria  normal  0.0792682  normal  0.101595 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.63 
 
 
461 aa  332  7.000000000000001e-90  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.63 
 
 
461 aa  332  7.000000000000001e-90  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.63 
 
 
461 aa  332  7.000000000000001e-90  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.63 
 
 
461 aa  332  7.000000000000001e-90  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2601  two component, sigma54 specific, transcriptional regulator, Fis family  40.49 
 
 
466 aa  330  2e-89  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  44.83 
 
 
463 aa  331  2e-89  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  40.75 
 
 
466 aa  331  2e-89  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  45.5 
 
 
454 aa  331  2e-89  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  41.41 
 
 
461 aa  331  2e-89  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009675  Anae109_0684  two component, sigma54 specific, Fis family transcriptional regulator  45.16 
 
 
456 aa  331  2e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
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