Gene Lferr_0608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0608 
Symbol 
ID6876570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp565578 
End bp566963 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content64% 
IMG OID642788491 
Producttwo component, sigma54 specific, transcriptional regulator, Fis family 
Protein accessionYP_002219069 
Protein GI198282748 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGAC CAGCTCCCAT CATCCTGACC ATCGACGATG ATCCCGACTT TCTGCGCCTG 
CTCGGCCTCT GGCTGGAAAG TGAGGGATAC CACGTCCTGG CCAGCAGTGA TCCCGTGCAG
GGCATGCAGA CGTTGCAGAC GGCCAGACCG GATCTGGTCA TCACCGATCT GCGCATGCCC
GGCATGGATG GAATGGCCGT GCTGGAGACG GTGCAGGCCC TCGATCCCGA CCTCCCCGTT
ATCCTCCTCA CCGCCCACGG CAGCATCCCC AACGCCGTGG CAGCCATGCG TGCCCAGGCT
TTCGGATATC TGAGCAAACC CTTCAGCAAT GAAGAGCTCC AGGAGTTGAC CACCGCCGCC
CTGGCGCAGC GCCACGCCGG GCAGGAAACC CGCAAGCTCC GGGCGGCGTT GCGGCAACAG
GCCGGGCAGA GCATCCTCCA TCGTAGCCCC GCCATGGCGG CGCTGGTGGA TGAGCTGGCG
TGCGTTGCCA ACTCGAAAGC CAGCGTTTTC CTTTCCGGAG AAAGCGGATC CGGCAAAGAA
CGGGTCGCTC GTGCCATCCA CGACGCCAGC CCACGCCGTG ACGGCCCGTT CGTTGCGGTC
AATTGCGGTG CCATCCCCGC CGGGCTGGCG GAGAGCGAAC TCTTCGGCCA TGTCAAGGGC
GCCTTCACCG GCGCCACCCA GGATCACACC GGATTGATCC GCAGCGCCAG CGGCGGCACT
CTGTTCCTCG ACGAAATCGC CGACCTGCCT CTCACTCTGC AGGTCAAATT GCTCCGCGTC
CTTCAGGAAG GTTCCTTGCG CCCCGTCGGC GCCAAAACGG AAATTTCCGT CGACCTGCGG
GTCATCAGTG CCACCCATCA GGACATTCAC GCCCTCACCG CCGACGGCAC CTTCCGCGAG
GATCTTTACT ATCGCCTGCA TGTCATCCCG CTGCGGGTCC CCAGCCTGAG CGAAAGGGCG
GAAGACATCC CGCTGCTGGC CCAGCACTTT CTGGACCGCG AGAGTCAGCG CATGAACCGG
GATATCCTGG GTTTCAGTCC CGAGGCCCTC GACAAGCTGA TGCAACGATC CTGGCCCGGC
AACGTCCGGG AATTGGAGAA TGCCGTCACC TTTGCCGCGG CCGTCACCGA AAAAGGCTGG
GTCGCCGCCG ACGCCATCCC TGACAACGGC CGCCAGGGTG GCCAGAGCGC CTTTCCTCCC
CTGCAGGACG CCAAGGCGGC CTTTGAGCGC GGCTACCTGG AAAACCTGCT ACGCGCGACG
GATGGCAACA TCTCCCGTGC CGCACGCATT GCCGGCCGAC ACCGGACGGA TCTTTACAAG
CTGATGCGTA AGCACAGTCT GGCTCCGCAA CTTTTCAAGA ATCCCGAGGA CCGGGATGAG
GAATAG
 
Protein sequence
MPRPAPIILT IDDDPDFLRL LGLWLESEGY HVLASSDPVQ GMQTLQTARP DLVITDLRMP 
GMDGMAVLET VQALDPDLPV ILLTAHGSIP NAVAAMRAQA FGYLSKPFSN EELQELTTAA
LAQRHAGQET RKLRAALRQQ AGQSILHRSP AMAALVDELA CVANSKASVF LSGESGSGKE
RVARAIHDAS PRRDGPFVAV NCGAIPAGLA ESELFGHVKG AFTGATQDHT GLIRSASGGT
LFLDEIADLP LTLQVKLLRV LQEGSLRPVG AKTEISVDLR VISATHQDIH ALTADGTFRE
DLYYRLHVIP LRVPSLSERA EDIPLLAQHF LDRESQRMNR DILGFSPEAL DKLMQRSWPG
NVRELENAVT FAAAVTEKGW VAADAIPDNG RQGGQSAFPP LQDAKAAFER GYLENLLRAT
DGNISRAARI AGRHRTDLYK LMRKHSLAPQ LFKNPEDRDE E