More than 300 homologs were found in PanDaTox collection
for query gene MADE_01723 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011138  MADE_01723  two-component system response regulator  100 
 
 
446 aa  912    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  76.75 
 
 
449 aa  700    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  63.84 
 
 
445 aa  566  1e-160  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  63.39 
 
 
445 aa  566  1e-160  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  63.39 
 
 
445 aa  566  1e-160  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  63.16 
 
 
445 aa  565  1e-160  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  63.18 
 
 
466 aa  567  1e-160  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  63.39 
 
 
445 aa  567  1e-160  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  63.39 
 
 
445 aa  566  1e-160  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  62.67 
 
 
445 aa  562  1.0000000000000001e-159  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  62.67 
 
 
445 aa  562  1.0000000000000001e-159  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  62.47 
 
 
445 aa  560  1e-158  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  62.47 
 
 
445 aa  560  1e-158  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  62.47 
 
 
445 aa  560  1e-158  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  62.47 
 
 
445 aa  552  1e-156  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  62.22 
 
 
445 aa  553  1e-156  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  61.78 
 
 
445 aa  550  1e-155  Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  61.88 
 
 
444 aa  542  1e-153  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  61.88 
 
 
444 aa  542  1e-153  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  61.88 
 
 
444 aa  542  1e-153  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  61.66 
 
 
444 aa  540  9.999999999999999e-153  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  61.66 
 
 
444 aa  540  9.999999999999999e-153  Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  61.66 
 
 
444 aa  540  9.999999999999999e-153  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  61.66 
 
 
444 aa  540  9.999999999999999e-153  Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  61.66 
 
 
444 aa  540  9.999999999999999e-153  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02410  hypothetical protein  61.66 
 
 
444 aa  540  9.999999999999999e-153  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  56.03 
 
 
462 aa  493  9.999999999999999e-139  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4272  sigma-54 dependent response regulator  54.26 
 
 
457 aa  489  1e-137  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2786  two component, sigma54 specific, Fis family transcriptional regulator  56.15 
 
 
477 aa  489  1e-137  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  54.69 
 
 
457 aa  487  1e-136  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  55.76 
 
 
466 aa  484  1e-135  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  53.78 
 
 
471 aa  483  1e-135  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_008781  Pnap_3376  two component, sigma54 specific, Fis family transcriptional regulator  54.75 
 
 
462 aa  481  1e-134  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.193945  normal 
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  54.85 
 
 
456 aa  477  1e-133  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  54.85 
 
 
456 aa  477  1e-133  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_002977  MCA1713  sigma-54 dependent DNA-binding response regulator  55.94 
 
 
460 aa  472  1e-132  Methylococcus capsulatus str. Bath  Bacteria  normal  0.91858  n/a   
 
 
-
 
NC_007484  Noc_0785  Fis family two component transcriptional regulator  55.74 
 
 
456 aa  471  1e-132  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  54.89 
 
 
469 aa  468  1.0000000000000001e-131  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_007498  Pcar_0498  two component response regulator  54.85 
 
 
451 aa  469  1.0000000000000001e-131  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1161  two component, sigma54 specific, Fis family transcriptional regulator  54.36 
 
 
453 aa  464  1e-129  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2771  two component Fis family transcriptional regulator  54.67 
 
 
449 aa  459  9.999999999999999e-129  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.195731 
 
 
-
 
NC_011901  Tgr7_2494  response regulator receiver protein  53.15 
 
 
452 aa  457  1e-127  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_2187  two component, sigma54 specific, Fis family transcriptional regulator  51.47 
 
 
456 aa  444  1e-123  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  48.44 
 
 
461 aa  434  1e-120  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  48.44 
 
 
461 aa  434  1e-120  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1222  putative two component, sigma54 specific, transcriptional regulator, Fis family  52.33 
 
 
475 aa  430  1e-119  Thauera sp. MZ1T  Bacteria  normal  0.20015  n/a   
 
 
-
 
NC_011206  Lferr_2568  two component, sigma54 specific, transcriptional regulator, Fis family  50.59 
 
 
457 aa  425  1e-118  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0491002  normal 
 
 
-
 
NC_011761  AFE_2955  sigma-54 dependent DNA-binding response regulator, putative  50.59 
 
 
457 aa  425  1e-118  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2292  two component, sigma54 specific, Fis family transcriptional regulator  45.25 
 
 
462 aa  386  1e-106  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  42.27 
 
 
467 aa  364  2e-99  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4257  two component, sigma54 specific, Fis family transcriptional regulator  42.83 
 
 
463 aa  362  6e-99  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  43.97 
 
 
480 aa  355  1e-96  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  42.16 
 
 
463 aa  353  2e-96  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  41.34 
 
 
453 aa  354  2e-96  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2280  two component, sigma54 specific, transcriptional regulator, Fis family  41.1 
 
 
453 aa  352  5.9999999999999994e-96  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.620123 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  44.6 
 
 
441 aa  350  2e-95  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  44.6 
 
 
441 aa  350  3e-95  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  44.6 
 
 
441 aa  350  3e-95  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  44.6 
 
 
441 aa  350  3e-95  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  44.6 
 
 
441 aa  350  3e-95  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  44.6 
 
 
441 aa  350  4e-95  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_007760  Adeh_0417  two component, sigma54 specific, Fis family transcriptional regulator  43.62 
 
 
474 aa  349  6e-95  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.45134  n/a   
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  44.37 
 
 
441 aa  348  9e-95  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  41.67 
 
 
460 aa  348  1e-94  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0445  two component, sigma54 specific, transcriptional regulator, Fis family  43.37 
 
 
481 aa  348  1e-94  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  40.82 
 
 
473 aa  347  2e-94  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
470 aa  347  2e-94  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  40.82 
 
 
473 aa  347  2e-94  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_0446  two component, sigma54 specific, transcriptional regulator, Fis family  43.37 
 
 
481 aa  347  2e-94  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  44.37 
 
 
441 aa  347  4e-94  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  43.78 
 
 
441 aa  346  4e-94  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  44.6 
 
 
441 aa  346  4e-94  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  44.01 
 
 
441 aa  347  4e-94  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  43.78 
 
 
441 aa  346  6e-94  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  40.52 
 
 
473 aa  345  7e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  43.11 
 
 
449 aa  345  1e-93  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  40.49 
 
 
461 aa  344  1e-93  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  43.55 
 
 
441 aa  344  1e-93  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_007519  Dde_1685  two component Fis family transcriptional regulator  42.54 
 
 
457 aa  343  4e-93  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00529377  n/a   
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  43.55 
 
 
441 aa  343  5e-93  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_009675  Anae109_1105  two component, sigma54 specific, Fis family transcriptional regulator  39.74 
 
 
475 aa  342  5.999999999999999e-93  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.926771  normal  0.835973 
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  40.04 
 
 
467 aa  342  7e-93  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  39.66 
 
 
489 aa  341  2e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1750  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
466 aa  340  2e-92  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0970  two component, sigma54 specific, transcriptional regulator, Fis family  39.74 
 
 
473 aa  341  2e-92  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0157817  hitchhiker  0.00000223455 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.19 
 
 
461 aa  340  2.9999999999999998e-92  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  42.02 
 
 
492 aa  340  4e-92  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  39.45 
 
 
489 aa  340  4e-92  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  39.45 
 
 
489 aa  340  4e-92  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.19 
 
 
461 aa  339  5e-92  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.19 
 
 
461 aa  339  5e-92  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  41.02 
 
 
454 aa  339  5e-92  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.19 
 
 
461 aa  339  5e-92  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.19 
 
 
461 aa  339  5e-92  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  40.18 
 
 
464 aa  338  9e-92  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  40.68 
 
 
444 aa  338  9.999999999999999e-92  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  40.97 
 
 
461 aa  338  9.999999999999999e-92  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  39.45 
 
 
490 aa  338  9.999999999999999e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  41.94 
 
 
457 aa  338  9.999999999999999e-92  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  40.45 
 
 
463 aa  338  1.9999999999999998e-91  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
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