More than 300 homologs were found in PanDaTox collection
for query gene Mext_0409 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0409  binding-protein-dependent transport systems inner membrane component  100 
 
 
380 aa  660    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.541463 
 
 
-
 
NC_011757  Mchl_0442  binding-protein-dependent transport systems inner membrane component  93.89 
 
 
380 aa  501  1e-141  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.728913 
 
 
-
 
NC_010725  Mpop_0477  binding-protein-dependent transport systems inner membrane component  77.56 
 
 
380 aa  362  6e-99  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0020  binding-protein-dependent transport systems inner membrane component  53.79 
 
 
379 aa  176  6e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.164397  n/a   
 
 
-
 
NC_009436  Ent638_2729  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
385 aa  160  3e-38  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2944  binding-protein-dependent transport systems inner membrane component  38.38 
 
 
400 aa  154  2e-36  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.543286  n/a   
 
 
-
 
NC_010658  SbBS512_E0843  ABC transporter, quaternary amine uptake (QAT) family, permease protein  33.51 
 
 
385 aa  146  5e-34  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1517  binding-protein-dependent transport systems inner membrane component  33.51 
 
 
385 aa  146  5e-34  Escherichia coli ATCC 8739  Bacteria  normal  0.89368  normal 
 
 
-
 
NC_010498  EcSMS35_0914  quaternary amine ABC transporter permease  34.06 
 
 
385 aa  145  9e-34  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.664933 
 
 
-
 
NC_011353  ECH74115_3255  ABC transporter, quaternary amine uptake (QAT) family, permease protein  33.24 
 
 
385 aa  144  2e-33  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000687244 
 
 
-
 
CP001637  EcDH1_1527  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
385 aa  144  3e-33  Escherichia coli DH1  Bacteria  normal  0.782089  n/a   
 
 
-
 
NC_009801  EcE24377A_2419  quaternary amine ABC transporter permease  33.79 
 
 
385 aa  143  5e-33  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2353  inner membrane ABC transporter permease protein YehY  34.99 
 
 
377 aa  142  9.999999999999999e-33  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02060  predicted transporter subunit: membrane component of ABC superfamily  33.51 
 
 
385 aa  141  1.9999999999999998e-32  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02018  hypothetical protein  33.51 
 
 
385 aa  141  1.9999999999999998e-32  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2265  quaternary amine ABC transporter permease  33.51 
 
 
385 aa  141  1.9999999999999998e-32  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2398  inner membrane ABC transporter permease YehY  34.7 
 
 
389 aa  141  1.9999999999999998e-32  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0918369  normal 
 
 
-
 
NC_011094  SeSA_A2402  inner membrane ABC transporter permease YehY  34.7 
 
 
389 aa  140  3e-32  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.120526  normal 
 
 
-
 
NC_011149  SeAg_B2309  inner membrane ABC transporter permease protein YehY  34.7 
 
 
389 aa  140  3e-32  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2510  inner membrane ABC transporter permease YehY  35.21 
 
 
389 aa  140  3.9999999999999997e-32  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.579969  normal 
 
 
-
 
NC_009832  Spro_1446  binding-protein-dependent transport systems inner membrane component  32.45 
 
 
386 aa  139  1e-31  Serratia proteamaculans 568  Bacteria  normal  0.706116  normal 
 
 
-
 
NC_010511  M446_0017  binding-protein-dependent transport systems inner membrane component  56.67 
 
 
383 aa  137  4e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.387266  normal  0.0728154 
 
 
-
 
NC_009708  YpsIP31758_2785  quaternary amine ABC transporter permease  35.49 
 
 
384 aa  136  8e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1330  quaternary amine ABC transporter permease  35.49 
 
 
384 aa  135  9e-31  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2864  binding-protein-dependent transport systems inner membrane component  35.49 
 
 
384 aa  135  9e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3625  binding-protein-dependent transport systems inner membrane component  36.54 
 
 
383 aa  132  1.0000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3116  binding-protein-dependent transport systems inner membrane component  41.63 
 
 
386 aa  116  7.999999999999999e-25  Pseudomonas mendocina ymp  Bacteria  normal  0.255737  normal  0.184404 
 
 
-
 
NC_011666  Msil_2138  binding-protein-dependent transport systems inner membrane component  43.48 
 
 
389 aa  107  4e-22  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009505  BOV_0215  ABC transporter, permease protein  34.45 
 
 
386 aa  102  1e-20  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1855  binding-protein-dependent transport systems inner membrane component  38.42 
 
 
392 aa  100  5e-20  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1923  glycine betaine transport system permease protein  32.86 
 
 
526 aa  99.4  1e-19  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0267  quaternary amine ABC transporter periplasmic substrate-binding protein  33.33 
 
 
526 aa  99.4  1e-19  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_3333  Substrate-binding region of ABC-type glycine betaine transport system  38.75 
 
 
524 aa  96.7  7e-19  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000937167  n/a   
 
 
-
 
NC_013730  Slin_0317  binding-protein-dependent transport systems inner membrane component  36.67 
 
 
519 aa  94.4  3e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.417886 
 
 
-
 
NC_009620  Smed_4638  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
399 aa  94  4e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.508179  normal  0.272859 
 
 
-
 
NC_011369  Rleg2_0144  binding-protein-dependent transport systems inner membrane component  35.65 
 
 
388 aa  93.2  7e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0628663 
 
 
-
 
NC_010001  Cphy_0119  substrate-binding region of ABC-type glycine betaine transport system  40.77 
 
 
523 aa  92.4  1e-17  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000124345  n/a   
 
 
-
 
NC_004116  SAG0243  amino acid ABC transporter, permease protein  35.93 
 
 
211 aa  91.3  3e-17  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0224  ABC transporter, permease protein  34.73 
 
 
386 aa  91.3  3e-17  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3512  binding-protein-dependent transport systems inner membrane component  33.43 
 
 
392 aa  91.3  3e-17  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0150  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
388 aa  90.9  4e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2384  binding-protein dependent transport system inner membrane protein  35.96 
 
 
392 aa  90.9  4e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.532854  n/a   
 
 
-
 
NC_013517  Sterm_1515  Substrate-binding region of ABC-type glycine betaine transport system  37.58 
 
 
526 aa  88.2  2e-16  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0692577  n/a   
 
 
-
 
NC_010003  Pmob_1125  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
218 aa  88.2  2e-16  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1156  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
207 aa  88.6  2e-16  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4889  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
398 aa  88.6  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.225612  hitchhiker  0.00448624 
 
 
-
 
NC_010515  Bcenmc03_5140  binding-protein-dependent transport systems inner membrane component  33.42 
 
 
392 aa  87.8  3e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.733868  normal 
 
 
-
 
NC_008261  CPF_0538  glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein  38.21 
 
 
517 aa  87.8  3e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.863672  n/a   
 
 
-
 
NC_008262  CPR_0522  glycine betaine/carnitine/choline ABC transporter, permease/substrate-binding protein  38.21 
 
 
517 aa  87.8  3e-16  Clostridium perfringens SM101  Bacteria  normal  0.271995  n/a   
 
 
-
 
NC_002976  SERP2357  amino acid ABC transporter, permease protein  29.19 
 
 
211 aa  87.4  4e-16  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3225  binding-protein-dependent transport systems inner membrane component  33.42 
 
 
392 aa  87.4  4e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5142  binding-protein-dependent transport systems inner membrane component  33.42 
 
 
392 aa  87.4  4e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  0.28982  normal 
 
 
-
 
NC_009667  Oant_0298  binding-protein-dependent transport systems inner membrane component  33.43 
 
 
398 aa  87  5e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2030  amino acid ABC transporter, permease protein  29.47 
 
 
211 aa  85.9  0.000000000000001  Staphylococcus epidermidis RP62A  Bacteria  normal  0.207242  n/a   
 
 
-
 
NC_007651  BTH_I2379  ABC transporter, permease protein  34.56 
 
 
406 aa  85.9  0.000000000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0578  binding-protein-dependent transport systems inner membrane component  40 
 
 
235 aa  85.9  0.000000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0139749  n/a   
 
 
-
 
NC_008148  Rxyl_0984  binding-protein-dependent transport systems inner membrane component  40 
 
 
236 aa  85.9  0.000000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.660466  n/a   
 
 
-
 
NC_014212  Mesil_0908  binding-protein-dependent transport systems inner membrane component  41.13 
 
 
434 aa  84.7  0.000000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0426507 
 
 
-
 
NC_009074  BURPS668_1975  amine ABC transporter, permease protein  36.56 
 
 
406 aa  84.7  0.000000000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1994  amine ABC transporter, permease protein  36.56 
 
 
406 aa  84.7  0.000000000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.455758  n/a   
 
 
-
 
NC_007511  Bcep18194_B0498  ABC proline/glycine betaine transporter, inner membrane subunit  32.42 
 
 
392 aa  85.1  0.000000000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4536  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
392 aa  84.3  0.000000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.889052  normal 
 
 
-
 
NC_012793  GWCH70_0296  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
211 aa  83.2  0.000000000000007  Geobacillus sp. WCH70  Bacteria  normal  0.4946  n/a   
 
 
-
 
NC_010552  BamMC406_5060  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
392 aa  82.4  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2979  binding-protein-dependent transport systems inner membrane component  30.62 
 
 
210 aa  82.8  0.00000000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2474  binding-protein-dependent transport systems inner membrane component  28.78 
 
 
211 aa  81.6  0.00000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.13842  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1579  amine ABC transporter, permease protein  36.2 
 
 
406 aa  81.6  0.00000000000002  Burkholderia mallei SAVP1  Bacteria  normal  0.8067  n/a   
 
 
-
 
NC_008836  BMA10229_A0238  amine ABC transporter, permease protein  36.2 
 
 
406 aa  81.6  0.00000000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  0.411768  n/a   
 
 
-
 
NC_007963  Csal_2353  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
220 aa  81.6  0.00000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2522  binding-protein-dependent transport systems inner membrane component  28.78 
 
 
211 aa  81.6  0.00000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.241712  n/a   
 
 
-
 
NC_009080  BMA10247_0921  amine ABC transporter, permease protein  36.2 
 
 
406 aa  81.6  0.00000000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  0.73664  n/a   
 
 
-
 
NC_013411  GYMC61_1174  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
209 aa  81.6  0.00000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1202  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
212 aa  81.3  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1139  ABC transporter, permease protein  36.2 
 
 
386 aa  81.3  0.00000000000003  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.00529998  n/a   
 
 
-
 
NC_013204  Elen_0084  Substrate-binding region of ABC-type glycine betaine transport system  29.78 
 
 
528 aa  80.9  0.00000000000004  Eggerthella lenta DSM 2243  Bacteria  normal  0.689632  normal 
 
 
-
 
NC_008025  Dgeo_0173  binding-protein-dependent transport systems inner membrane component  39.13 
 
 
397 aa  80.5  0.00000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.348533 
 
 
-
 
NC_013223  Dret_0770  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
222 aa  79.7  0.00000000000007  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_2803  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
218 aa  79  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000135531  n/a   
 
 
-
 
NC_013457  VEA_001529  probable inner-membrane permease  33.54 
 
 
199 aa  78.6  0.0000000000002  Vibrio sp. Ex25  Bacteria  normal  0.90895  n/a   
 
 
-
 
NC_007434  BURPS1710b_2133  ABC transporter, permease protein  36.16 
 
 
807 aa  77.8  0.0000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.304775  n/a   
 
 
-
 
NC_013037  Dfer_1250  binding-protein-dependent transport systems inner membrane component  40.46 
 
 
525 aa  76.6  0.0000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.615651  normal  0.522042 
 
 
-
 
NC_007347  Reut_A2494  binding-protein dependent transport system inner membrane protein  32.5 
 
 
216 aa  75.5  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5205  Substrate-binding region of ABC-type glycine betaine transport system  33.73 
 
 
537 aa  75.5  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.057164  normal 
 
 
-
 
NC_007644  Moth_1687  binding-protein dependent transport system inner membrane protein  35.29 
 
 
216 aa  75.5  0.000000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.296166  normal  0.403449 
 
 
-
 
NC_007973  Rmet_0801  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
216 aa  74.7  0.000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.435209 
 
 
-
 
NC_010338  Caul_1376  substrate-binding region of ABC-type glycine betaine transport system  34.76 
 
 
515 aa  75.1  0.000000000002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5106  binding-protein-dependent transport systems inner membrane component  31.28 
 
 
220 aa  75.5  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.485727  normal  0.10095 
 
 
-
 
NC_004116  SAG2130  amino acid ABC transporter, amino acid-binding protein/permease protein  32.1 
 
 
504 aa  74.7  0.000000000003  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1354  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
204 aa  74.3  0.000000000003  Methanosphaerula palustris E1-9c  Archaea  normal  0.459118  normal  0.684309 
 
 
-
 
NC_007484  Noc_0540  ABC transporter inner membrane/substrate-binding proteins  32.82 
 
 
501 aa  73.9  0.000000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1686  binding-protein dependent transport system inner membrane protein  35.59 
 
 
207 aa  73.9  0.000000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.038351  normal  0.407571 
 
 
-
 
NC_008254  Meso_2980  binding-protein-dependent transport systems inner membrane component  35.38 
 
 
211 aa  73.9  0.000000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0148  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
249 aa  73.2  0.000000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1636  binding-protein-dependent transport systems inner membrane component  29.28 
 
 
242 aa  73.2  0.000000000007  Salinispora tropica CNB-440  Bacteria  normal  normal  0.537762 
 
 
-
 
NC_007347  Reut_A1451  binding-protein dependent transport system inner membrane protein  35.44 
 
 
493 aa  72.8  0.000000000008  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0349  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
217 aa  72.8  0.000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000441273  n/a   
 
 
-
 
NC_010682  Rpic_2784  Substrate-binding region of ABC-type glycine betaine transport system  35.32 
 
 
504 aa  72.8  0.000000000009  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2912  binding-protein-dependent transport systems inner membrane component  37.69 
 
 
250 aa  72.8  0.000000000009  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.105441 
 
 
-
 
NC_012856  Rpic12D_2379  Substrate-binding region of ABC-type glycine betaine transport system  33.64 
 
 
518 aa  72.4  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18430  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
214 aa  71.2  0.00000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000175392  n/a   
 
 
-
 
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