More than 300 homologs were found in PanDaTox collection
for query gene Dole_0140 on replicon NC_009943
Organism: Desulfococcus oleovorans Hxd3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009943  Dole_0140  response regulator receiver protein  100 
 
 
371 aa  758    Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2998  response regulator receiver protein  44.26 
 
 
377 aa  315  9.999999999999999e-85  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  31.93 
 
 
384 aa  167  2e-40  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_0279  response regulator receiver modulated serine phosphatase  28.4 
 
 
394 aa  144  2e-33  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0205  response regulator receiver protein  31.08 
 
 
395 aa  143  5e-33  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  27.2 
 
 
380 aa  139  1e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  28.13 
 
 
392 aa  136  5e-31  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  29.19 
 
 
378 aa  134  3e-30  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0905  response regulator receiver modulated serine phosphatase  25.38 
 
 
380 aa  130  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3723  response regulator receiver (CheY) modulated Serine phosphatase  28.99 
 
 
378 aa  130  4.0000000000000003e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0976167  normal  0.601311 
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  27.59 
 
 
385 aa  130  5.0000000000000004e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0898  sigma factor sigB regulation protein  23.71 
 
 
380 aa  129  8.000000000000001e-29  Bacillus cereus E33L  Bacteria  normal  0.503671  n/a   
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  45.32 
 
 
437 aa  129  8.000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0915  sigma factor sigB regulation protein  23.71 
 
 
380 aa  129  1.0000000000000001e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00116334  n/a   
 
 
-
 
NC_011658  BCAH187_A1161  response regulator  23.71 
 
 
380 aa  128  1.0000000000000001e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1870  response regulator receiver modulated serine phosphatase  29.41 
 
 
379 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 8802  Bacteria  normal  0.177859  normal 
 
 
-
 
NC_014248  Aazo_4465  response regulator receiver sensor signal transduction histidine kinase  46.9 
 
 
437 aa  128  2.0000000000000002e-28  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1844  response regulator receiver modulated serine phosphatase  29.41 
 
 
379 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_1070  response regulator  23.71 
 
 
358 aa  128  2.0000000000000002e-28  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  9.209800000000002e-41 
 
 
-
 
NC_003909  BCE_1088  response regulator  23.55 
 
 
380 aa  127  4.0000000000000003e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0329  putative response regulator  28.43 
 
 
415 aa  127  4.0000000000000003e-28  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1566  response regulator receiver (CheY) modulated Serine phosphatase  29.71 
 
 
396 aa  127  5e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.244929 
 
 
-
 
NC_005945  BAS0930  response regulator  23.71 
 
 
380 aa  126  6e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0994  response regulator  23.71 
 
 
380 aa  126  6e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  47.86 
 
 
488 aa  126  6e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_007413  Ava_4136  response regulator receiver Signal transduction histidine kinase  47.62 
 
 
440 aa  125  8.000000000000001e-28  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000660181  hitchhiker  0.00876613 
 
 
-
 
NC_013440  Hoch_6548  response regulator receiver sensor signal transduction histidine kinase  51.69 
 
 
397 aa  125  1e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.543575 
 
 
-
 
NC_011725  BCB4264_A1035  response regulator  23.87 
 
 
380 aa  125  1e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  46.04 
 
 
443 aa  124  2e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_011772  BCG9842_B4268  response regulator  23.4 
 
 
380 aa  124  2e-27  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00568873 
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  26.56 
 
 
434 aa  124  3e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2528  response regulator receiver protein  31.5 
 
 
378 aa  124  3e-27  Magnetococcus sp. MC-1  Bacteria  normal  0.249668  normal  0.0734484 
 
 
-
 
NC_013522  Taci_1373  response regulator receiver modulated metal dependent phosphohydrolase  43.42 
 
 
365 aa  123  5e-27  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01717  putative response regulator  30.54 
 
 
568 aa  122  7e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  53.1 
 
 
338 aa  121  1.9999999999999998e-26  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0302  response regulator receiver modulated serine phosphatase  27.2 
 
 
400 aa  120  3e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  50.79 
 
 
566 aa  120  3e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  44.08 
 
 
386 aa  120  3e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_008340  Mlg_2429  response regulator receiver modulated metal dependent phosphohydrolase  44.22 
 
 
480 aa  120  3.9999999999999996e-26  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.129673 
 
 
-
 
NC_011726  PCC8801_2052  response regulator receiver modulated diguanylate cyclase  46.31 
 
 
481 aa  120  4.9999999999999996e-26  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  39.53 
 
 
236 aa  119  6e-26  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  47.62 
 
 
365 aa  119  6e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_013161  Cyan8802_2076  response regulator receiver modulated diguanylate cyclase  46.31 
 
 
481 aa  119  6e-26  Cyanothece sp. PCC 8802  Bacteria  hitchhiker  0.00773841  normal 
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  26.91 
 
 
577 aa  119  9e-26  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_25160  response regulator  42.41 
 
 
356 aa  119  9e-26  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05599  response regulator receiver  26.88 
 
 
560 aa  119  9.999999999999999e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_2078  response regulator receiver modulated serine phosphatase  26.79 
 
 
379 aa  118  9.999999999999999e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.61197  normal 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  25.84 
 
 
394 aa  119  9.999999999999999e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0393  two component transcriptional regulator, winged helix family  45.3 
 
 
227 aa  118  1.9999999999999998e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.202895 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  25.28 
 
 
394 aa  117  3e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  48.72 
 
 
356 aa  117  3e-25  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0731  response regulator receiver modulated serine phosphatase  26.84 
 
 
396 aa  117  3e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  45.93 
 
 
386 aa  117  3e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  40.14 
 
 
317 aa  116  5e-25  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3242  response regulator receiver sensor signal transduction histidine kinase  41.33 
 
 
441 aa  116  5e-25  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  43.17 
 
 
465 aa  116  6e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  47.86 
 
 
222 aa  115  8.999999999999998e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_014248  Aazo_4229  response regulator receiver sensor signal transduction histidine kinase  49.58 
 
 
383 aa  115  8.999999999999998e-25  'Nostoc azollae' 0708  Bacteria  normal  0.599633  n/a   
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  40.38 
 
 
541 aa  115  1.0000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  27.22 
 
 
390 aa  115  1.0000000000000001e-24  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_007298  Daro_1573  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region  47.83 
 
 
373 aa  115  2.0000000000000002e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  40.7 
 
 
384 aa  114  2.0000000000000002e-24  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  48.72 
 
 
156 aa  115  2.0000000000000002e-24  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_011726  PCC8801_1350  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.2 
 
 
715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008825  Mpe_A0671  two component LuxR family transcriptional regulator  45.3 
 
 
333 aa  114  2.0000000000000002e-24  Methylibium petroleiphilum PM1  Bacteria  normal  0.0205263  normal 
 
 
-
 
NC_013161  Cyan8802_1380  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  44.2 
 
 
715 aa  114  2.0000000000000002e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.923401  normal 
 
 
-
 
NC_011146  Gbem_1018  response regulator receiver sensor signal transduction histidine kinase  40.54 
 
 
441 aa  115  2.0000000000000002e-24  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00729938  n/a   
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  46.27 
 
 
301 aa  115  2.0000000000000002e-24  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  38.56 
 
 
309 aa  114  3e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_007948  Bpro_2082  anti-sigma-factor antagonist domain-containing protein  27.3 
 
 
566 aa  114  3e-24  Polaromonas sp. JS666  Bacteria  normal  normal  0.806146 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  26.98 
 
 
394 aa  114  3e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  49.15 
 
 
236 aa  114  3e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_013161  Cyan8802_0849  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  44.44 
 
 
593 aa  114  3e-24  Cyanothece sp. PCC 8802  Bacteria  normal  0.386146  normal 
 
 
-
 
NC_011726  PCC8801_0820  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  44.44 
 
 
593 aa  114  3e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  48.48 
 
 
375 aa  113  4.0000000000000004e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  51.26 
 
 
202 aa  114  4.0000000000000004e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_007802  Jann_0071  response regulator receiver (CheY-like) modulated serine phosphatase  26.88 
 
 
426 aa  113  4.0000000000000004e-24  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1139  response regulator receiver modulated diguanylate cyclase  41.52 
 
 
308 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  45.83 
 
 
235 aa  113  4.0000000000000004e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_1169  response regulator receiver modulated diguanylate cyclase  41.52 
 
 
308 aa  113  4.0000000000000004e-24  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1118  response regulator receiver sensor signal transduction histidine kinase  43.33 
 
 
452 aa  113  5e-24  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000972917  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  42.86 
 
 
337 aa  113  6e-24  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_010627  Bphy_7700  multi-sensor signal transduction histidine kinase  39.87 
 
 
541 aa  113  6e-24  Burkholderia phymatum STM815  Bacteria  normal  0.163324  normal  0.507763 
 
 
-
 
NC_013457  VEA_000007  serine phosphatase RsbU regulator of sigma subunit  26.71 
 
 
397 aa  113  7.000000000000001e-24  Vibrio sp. Ex25  Bacteria  normal  0.441967  n/a   
 
 
-
 
NC_009523  RoseRS_3737  two component transcriptional regulator  45.3 
 
 
231 aa  113  7.000000000000001e-24  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00273603 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  47.01 
 
 
353 aa  112  8.000000000000001e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_008312  Tery_0921  response regulator receiver modulated serine phosphatase  25.86 
 
 
378 aa  112  8.000000000000001e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  49.6 
 
 
322 aa  112  9e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  35.82 
 
 
339 aa  112  1.0000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1504  two component transcriptional regulator  45.3 
 
 
231 aa  112  1.0000000000000001e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.263867  normal  0.57819 
 
 
-
 
NC_009439  Pmen_0836  response regulator receiver protein  50 
 
 
395 aa  112  1.0000000000000001e-23  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0809  response regulator receiver sensor signal transduction histidine kinase  52.07 
 
 
367 aa  112  1.0000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  42.96 
 
 
348 aa  112  1.0000000000000001e-23  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  38.56 
 
 
309 aa  112  1.0000000000000001e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_008781  Pnap_0979  response regulator receiver protein  46.15 
 
 
336 aa  112  1.0000000000000001e-23  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  41.91 
 
 
361 aa  111  2.0000000000000002e-23  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  40.48 
 
 
391 aa  111  2.0000000000000002e-23  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  47.06 
 
 
383 aa  111  2.0000000000000002e-23  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  47.01 
 
 
310 aa  111  2.0000000000000002e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  47.06 
 
 
383 aa  111  2.0000000000000002e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
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