193 homologs were found in PanDaTox collection
for query gene Dfer_4500 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_4500  XRE family plasmid maintenance system antidote protein  100 
 
 
99 aa  200  5e-51  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.550402 
 
 
-
 
NC_009943  Dole_2889  XRE family plasmid maintenance system antidote protein  44.58 
 
 
104 aa  89  2e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.955801  n/a   
 
 
-
 
NC_007963  Csal_2342  XRE family plasmid maintenance system antidote protein  51.14 
 
 
93 aa  88.2  3e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2505  XRE family plasmid maintenance system antidote protein  42.5 
 
 
103 aa  85.5  2e-16  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000574166  normal 
 
 
-
 
NC_007484  Noc_0571  XRE family transcriptional regulator  45.45 
 
 
107 aa  84  6e-16  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1062  XRE family plasmid maintenance system antidote protein  48.65 
 
 
102 aa  82.8  0.000000000000001  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000765045 
 
 
-
 
NC_013730  Slin_2499  XRE family plasmid maintenance system antidote protein  41.46 
 
 
101 aa  82  0.000000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.0881387  normal  0.214118 
 
 
-
 
NC_009467  Acry_3241  XRE family plasmid maintenance system antidote protein  48.65 
 
 
95 aa  81.6  0.000000000000003  Acidiphilium cryptum JF-5  Bacteria  normal  0.0714927  n/a   
 
 
-
 
NC_013422  Hneap_1633  plasmid maintenance system antidote protein, XRE family  45.24 
 
 
96 aa  81.6  0.000000000000003  Halothiobacillus neapolitanus c2  Bacteria  normal  0.110422  n/a   
 
 
-
 
NC_011662  Tmz1t_3858  XRE family plasmid maintenance system antidote protein  45.24 
 
 
105 aa  80.5  0.000000000000008  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1144  XRE family plasmid maintenance system antidote protein  49.37 
 
 
91 aa  78.6  0.00000000000002  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0405  XRE family plasmid maintenance system antidote protein  49.37 
 
 
91 aa  78.6  0.00000000000002  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3818  XRE family plasmid maintenance system antidote protein  45.05 
 
 
94 aa  79  0.00000000000002  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00442118  n/a   
 
 
-
 
NC_013889  TK90_1105  plasmid maintenance system antidote protein, XRE family  45.78 
 
 
90 aa  78.6  0.00000000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0903859  normal 
 
 
-
 
NC_007484  Noc_1291  XRE family transcriptional regulator  44.87 
 
 
98 aa  78.2  0.00000000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0361  XRE family plasmid maintenance system antidote protein  49.37 
 
 
91 aa  77.8  0.00000000000004  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3008  XRE family plasmid maintenance system antidote protein  42.86 
 
 
104 aa  77.4  0.00000000000007  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3198  XRE family plasmid maintenance system antidote protein  39.24 
 
 
104 aa  77  0.00000000000008  Marinobacter aquaeolei VT8  Bacteria  normal  0.562378  n/a   
 
 
-
 
NC_013173  Dbac_2571  XRE family plasmid maintenance system antidote protein  44.59 
 
 
109 aa  77  0.00000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013733  Slin_6998  plasmid maintenance system antidote protein, XRE family  43.42 
 
 
95 aa  76.3  0.0000000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.337811  normal  0.775047 
 
 
-
 
NC_010508  Bcenmc03_3101  XRE family plasmid maintenance system antidote protein  41.18 
 
 
100 aa  75.9  0.0000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.768418 
 
 
-
 
NC_011004  Rpal_1484  XRE family plasmid maintenance system antidote protein  45.83 
 
 
107 aa  75.9  0.0000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2469  XRE family plasmid maintenance system antidote protein  41.18 
 
 
100 aa  75.5  0.0000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_3083  XRE family plasmid maintenance system antidote protein  41.18 
 
 
100 aa  75.5  0.0000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008608  Ppro_3836  XRE family plasmid maintenance system antidote protein  44.3 
 
 
96 aa  75.5  0.0000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1590  XRE family plasmid maintenance system antidote protein  45.21 
 
 
107 aa  75.5  0.0000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0352422  normal 
 
 
-
 
NC_008320  Shewmr7_4040  XRE family plasmid maintenance system antidote protein  43.33 
 
 
98 aa  75.1  0.0000000000003  Shewanella sp. MR-7  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2564  XRE family plasmid maintenance system antidote protein  40.54 
 
 
116 aa  74.7  0.0000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.63579  n/a   
 
 
-
 
NC_007964  Nham_0578  XRE family plasmid maintenance system antidote protein  38.46 
 
 
108 aa  74.3  0.0000000000005  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3001  XRE family plasmid maintenance system antidote protein  41.33 
 
 
100 aa  73.6  0.0000000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.770477 
 
 
-
 
NC_007510  Bcep18194_A6433  XRE family plasmid maintenance system antidote protein  38.82 
 
 
100 aa  72.8  0.000000000001  Burkholderia sp. 383  Bacteria  normal  normal  0.294261 
 
 
-
 
NC_007643  Rru_A2779  plasmid maintenance system antidote protein  42.86 
 
 
110 aa  73.2  0.000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.48213  n/a   
 
 
-
 
NC_008751  Dvul_1455  XRE family plasmid maintenance system antidote protein  37.84 
 
 
100 aa  73.2  0.000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  0.077029  normal 
 
 
-
 
NC_009656  PSPA7_5378  addiction module antidote protein  37.08 
 
 
101 aa  73.2  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.369538  n/a   
 
 
-
 
NC_008463  PA14_61840  putative virulence-associated protein  37.08 
 
 
101 aa  72.4  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000756673  hitchhiker  0.00808433 
 
 
-
 
NC_009719  Plav_0019  XRE family plasmid maintenance system antidote protein  40.79 
 
 
98 aa  72.4  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191318  normal  0.0141037 
 
 
-
 
NC_010002  Daci_1211  XRE family plasmid maintenance system antidote protein  39.74 
 
 
103 aa  72  0.000000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1216  XRE family plasmid maintenance system antidote protein  40 
 
 
101 aa  71.6  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4192  XRE family plasmid maintenance system antidote protein  35.9 
 
 
99 aa  71.2  0.000000000004  Pseudomonas putida F1  Bacteria  normal  0.322269  normal 
 
 
-
 
NC_007901  Rfer_4449  XRE family plasmid maintenance system antidote protein  44 
 
 
91 aa  70.9  0.000000000006  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_007950  Bpro_5380  XRE family plasmid maintenance system antidote protein  46.67 
 
 
94 aa  70.5  0.000000000007  Polaromonas sp. JS666  Bacteria  normal  0.031339  hitchhiker  0.000847786 
 
 
-
 
NC_011901  Tgr7_0043  XRE family plasmid maintenance system antidote protein  41.89 
 
 
99 aa  70.5  0.000000000007  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1963  XRE family plasmid maintenance system antidote protein  44.44 
 
 
99 aa  70.5  0.000000000008  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0393563 
 
 
-
 
NC_013889  TK90_0224  plasmid maintenance system antidote protein, XRE family  40.79 
 
 
99 aa  69.7  0.00000000001  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.657872  normal  0.19652 
 
 
-
 
NC_007643  Rru_A2019  plasmid maintenance system antidote protein  36 
 
 
99 aa  69.7  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1677  XRE family plasmid maintenance system antidote protein  44.74 
 
 
93 aa  69.3  0.00000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2852  XRE family plasmid maintenance system antidote protein  37.18 
 
 
100 aa  69.7  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3643  XRE family plasmid maintenance system antidote protein  41.56 
 
 
95 aa  69.3  0.00000000001  Pseudomonas putida GB-1  Bacteria  normal  0.0160538  normal 
 
 
-
 
NC_002947  PP_1585  antidote protein, putative  34.62 
 
 
99 aa  68.9  0.00000000002  Pseudomonas putida KT2440  Bacteria  normal  normal  0.315858 
 
 
-
 
NC_007404  Tbd_0672  plasmid maintenance system antidote protein  39.19 
 
 
171 aa  68.9  0.00000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.15068  normal  0.669698 
 
 
-
 
NC_007413  Ava_3243  plasmid maintenance system antidote protein  32.47 
 
 
102 aa  69.3  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0211861  normal 
 
 
-
 
NC_007517  Gmet_2972  XRE family plasmid maintenance system antidote protein  36.84 
 
 
101 aa  68.9  0.00000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5444  XRE family plasmid maintenance system antidote protein  42.47 
 
 
109 aa  68.9  0.00000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.401369  normal  0.26731 
 
 
-
 
NC_009800  EcHS_A2644  putative addiction module  37.5 
 
 
1365 aa  68.6  0.00000000003  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1754  virulence-associated protein, putative  40.28 
 
 
104 aa  68.2  0.00000000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0614542  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1669  addiction module antidote protein  35.29 
 
 
101 aa  68.2  0.00000000003  Coxiella burnetii RSA 331  Bacteria  normal  0.179147  n/a   
 
 
-
 
NC_011901  Tgr7_1105  XRE family plasmid maintenance system antidote protein  39.19 
 
 
105 aa  68.6  0.00000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.912318  n/a   
 
 
-
 
NC_008009  Acid345_3424  XRE family plasmid maintenance system antidote protein  39.44 
 
 
98 aa  68.2  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2491  XRE family plasmid maintenance system antidote protein  35.96 
 
 
96 aa  68.6  0.00000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.289319  normal 
 
 
-
 
NC_004349  SO_A0023  plasmid maintenance system antidote protein HigA  44.59 
 
 
99 aa  68.2  0.00000000004  Shewanella oneidensis MR-1  Bacteria  normal  0.0227137  n/a   
 
 
-
 
NC_011901  Tgr7_2786  XRE family plasmid maintenance system antidote protein  37.33 
 
 
106 aa  67.8  0.00000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  unclonable  0.000000094081  n/a   
 
 
-
 
NC_011060  Ppha_1377  XRE family plasmid maintenance system antidote protein  38.16 
 
 
99 aa  68.2  0.00000000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0372  XRE family plasmid maintenance system antidote protein  41.89 
 
 
96 aa  68.2  0.00000000004  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0533  virulence-associated protein I  35.29 
 
 
103 aa  68.2  0.00000000004  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.888429  n/a   
 
 
-
 
NC_007484  Noc_2763  virulence-associated protein, putative  35.9 
 
 
100 aa  67.8  0.00000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2430  plasmid maintenance system antidote protein  35.06 
 
 
108 aa  67.8  0.00000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.216096  n/a   
 
 
-
 
NC_012560  Avin_42030  antitoxin protein  40.51 
 
 
95 aa  67.4  0.00000000006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009671  Oant_4678  XRE family plasmid maintenance system antidote protein  35.9 
 
 
98 aa  67.4  0.00000000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.171358  n/a   
 
 
-
 
NC_010338  Caul_3225  XRE family plasmid maintenance system antidote protein  33.78 
 
 
106 aa  67  0.00000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.114466 
 
 
-
 
NC_007484  Noc_0697  XRE family transcriptional regulator  41.89 
 
 
101 aa  67  0.00000000009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2524  XRE family plasmid maintenance system antidote protein  39.73 
 
 
103 aa  66.6  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0379048  n/a   
 
 
-
 
NC_013530  Xcel_0947  XRE family plasmid maintenance system antidote protein  35.14 
 
 
106 aa  66.2  0.0000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3616  XRE family plasmid maintenance system antidote protein  33.33 
 
 
100 aa  65.9  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.322775  n/a   
 
 
-
 
NC_007925  RPC_4745  XRE family plasmid maintenance system antidote protein  36.9 
 
 
104 aa  65.5  0.0000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.693896  normal 
 
 
-
 
NC_013174  Jden_0768  XRE family plasmid maintenance system antidote protein  34.62 
 
 
100 aa  65.9  0.0000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2031  XRE family plasmid maintenance system antidote protein  32.05 
 
 
106 aa  65.9  0.0000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.65469  n/a   
 
 
-
 
NC_013037  Dfer_4918  XRE family plasmid maintenance system antidote protein  40.85 
 
 
99 aa  65.1  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.128758 
 
 
-
 
NC_007951  Bxe_A0921  hypothetical protein  36.47 
 
 
151 aa  65.1  0.0000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1633  plasmid maintenance system antidote protein, XRE family  35.23 
 
 
105 aa  65.1  0.0000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0899701  normal  0.785699 
 
 
-
 
NC_008825  Mpe_A2823  putative plasmid maintenance system antidote protein  40.85 
 
 
167 aa  65.5  0.0000000003  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0608  XRE family plasmid maintenance system antidote protein  35.16 
 
 
98 aa  65.5  0.0000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3070  XRE family plasmid maintenance system antidote protein  38.1 
 
 
151 aa  65.1  0.0000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.314371  normal 
 
 
-
 
NC_007484  Noc_0437  plasmid maintenance system antidote protein  34.09 
 
 
95 aa  64.3  0.0000000006  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.494996  n/a   
 
 
-
 
NC_004578  PSPTO_0422  virulence-associated protein, putative  34.21 
 
 
97 aa  63.9  0.0000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1142  XRE family plasmid maintenance system antidote protein  34.62 
 
 
99 aa  63.9  0.0000000008  Xylella fastidiosa M12  Bacteria  normal  0.570352  n/a   
 
 
-
 
NC_010513  Xfasm12_0403  XRE family plasmid maintenance system antidote protein  34.62 
 
 
99 aa  63.9  0.0000000008  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0642  hypothetical protein  40.85 
 
 
96 aa  63.5  0.0000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.000000446232  normal  0.460246 
 
 
-
 
NC_007514  Cag_1487  XRE family plasmid maintenance system antidote protein  36.49 
 
 
103 aa  63.2  0.000000001  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000000000645872  n/a   
 
 
-
 
NC_012917  PC1_3183  XRE family plasmid maintenance system antidote protein  30.53 
 
 
113 aa  63.5  0.000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.171228  n/a   
 
 
-
 
NC_011206  Lferr_0091  XRE family plasmid maintenance system antidote protein  38.89 
 
 
105 aa  63.2  0.000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0089  DNA-binding protein, putative  38.89 
 
 
105 aa  63.2  0.000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.993479  n/a   
 
 
-
 
NC_008254  Meso_0885  XRE family plasmid maintenance system antidote protein  33.33 
 
 
102 aa  63.2  0.000000001  Chelativorans sp. BNC1  Bacteria  normal  0.673579  n/a   
 
 
-
 
NC_007484  Noc_0415  putative plasmid maintenance system antidote protein VapI  46.77 
 
 
78 aa  62.8  0.000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0576  addiction module antidote protein, HigA family  30.12 
 
 
131 aa  62  0.000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4141  XRE family plasmid maintenance system antidote protein  29.63 
 
 
101 aa  62  0.000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.267642  normal 
 
 
-
 
NC_007964  Nham_4027  XRE family plasmid maintenance system antidote protein  36.11 
 
 
101 aa  62.4  0.000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0522  addiction module antidote protein  30.12 
 
 
131 aa  62.4  0.000000002  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0418  addiction module antidote protein, HigA family  30.12 
 
 
131 aa  62.4  0.000000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00439  hypothetical protein  30.12 
 
 
113 aa  62  0.000000002  Escherichia coli BL21  Bacteria  normal  0.540311  n/a   
 
 
-
 
NC_010468  EcolC_3133  XRE family plasmid maintenance system antidote protein  30.12 
 
 
131 aa  62  0.000000002  Escherichia coli ATCC 8739  Bacteria  normal  0.0484556  unclonable  0.0000000122724 
 
 
-
 
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