130 homologs were found in PanDaTox collection
for query gene SO_A0023 on replicon NC_004349
Organism: Shewanella oneidensis MR-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004349  SO_A0023  plasmid maintenance system antidote protein HigA  100 
 
 
99 aa  208  2e-53  Shewanella oneidensis MR-1  Bacteria  normal  0.0227137  n/a   
 
 
-
 
NC_008320  Shewmr7_4040  XRE family plasmid maintenance system antidote protein  76.04 
 
 
98 aa  156  1e-37  Shewanella sp. MR-7  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0571  XRE family transcriptional regulator  47.5 
 
 
107 aa  79.7  0.00000000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2889  XRE family plasmid maintenance system antidote protein  42.35 
 
 
104 aa  75.1  0.0000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.955801  n/a   
 
 
-
 
NC_013173  Dbac_2571  XRE family plasmid maintenance system antidote protein  42.71 
 
 
109 aa  74.7  0.0000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2430  plasmid maintenance system antidote protein  42.31 
 
 
108 aa  73.2  0.000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.216096  n/a   
 
 
-
 
NC_008608  Ppro_3836  XRE family plasmid maintenance system antidote protein  42.53 
 
 
96 aa  73.2  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2342  XRE family plasmid maintenance system antidote protein  44.44 
 
 
93 aa  72  0.000000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2505  XRE family plasmid maintenance system antidote protein  42.5 
 
 
103 aa  70.9  0.000000000005  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000574166  normal 
 
 
-
 
NC_010513  Xfasm12_0405  XRE family plasmid maintenance system antidote protein  41.94 
 
 
91 aa  70.1  0.00000000001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1144  XRE family plasmid maintenance system antidote protein  41.94 
 
 
91 aa  70.1  0.00000000001  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1062  XRE family plasmid maintenance system antidote protein  36.25 
 
 
102 aa  69.3  0.00000000002  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000765045 
 
 
-
 
NC_009467  Acry_3241  XRE family plasmid maintenance system antidote protein  38.1 
 
 
95 aa  68.2  0.00000000003  Acidiphilium cryptum JF-5  Bacteria  normal  0.0714927  n/a   
 
 
-
 
NC_008751  Dvul_1455  XRE family plasmid maintenance system antidote protein  39.02 
 
 
100 aa  68.2  0.00000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  0.077029  normal 
 
 
-
 
NC_013037  Dfer_4500  XRE family plasmid maintenance system antidote protein  44.59 
 
 
99 aa  68.2  0.00000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.550402 
 
 
-
 
NC_013733  Slin_6998  plasmid maintenance system antidote protein, XRE family  38.1 
 
 
95 aa  67.8  0.00000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.337811  normal  0.775047 
 
 
-
 
NC_012917  PC1_3183  XRE family plasmid maintenance system antidote protein  40.51 
 
 
113 aa  67.8  0.00000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.171228  n/a   
 
 
-
 
NC_009800  EcHS_A0560  addiction module antidote protein  39.24 
 
 
131 aa  67  0.00000000009  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3133  XRE family plasmid maintenance system antidote protein  39.24 
 
 
131 aa  67  0.00000000009  Escherichia coli ATCC 8739  Bacteria  normal  0.0484556  unclonable  0.0000000122724 
 
 
-
 
CP001509  ECD_00434  predicted DNA-binding transcriptional regulator  39.29 
 
 
113 aa  66.6  0.0000000001  Escherichia coli BL21(DE3)  Bacteria  normal  0.449816  n/a   
 
 
-
 
CP001637  EcDH1_3127  plasmid maintenance system antidote protein, XRE family  39.24 
 
 
131 aa  66.6  0.0000000001  Escherichia coli DH1  Bacteria  normal  0.273977  n/a   
 
 
-
 
NC_007484  Noc_1291  XRE family transcriptional regulator  34.07 
 
 
98 aa  66.6  0.0000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00439  hypothetical protein  39.29 
 
 
113 aa  66.6  0.0000000001  Escherichia coli BL21  Bacteria  normal  0.540311  n/a   
 
 
-
 
NC_009483  Gura_3818  XRE family plasmid maintenance system antidote protein  42.53 
 
 
94 aa  66.2  0.0000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00442118  n/a   
 
 
-
 
NC_009801  EcE24377A_0522  addiction module antidote protein  39.29 
 
 
131 aa  66.6  0.0000000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0576  addiction module antidote protein, HigA family  39.24 
 
 
131 aa  66.6  0.0000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0418  addiction module antidote protein, HigA family  39.29 
 
 
131 aa  66.6  0.0000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2779  plasmid maintenance system antidote protein  36.36 
 
 
110 aa  65.5  0.0000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.48213  n/a   
 
 
-
 
NC_010577  XfasM23_0361  XRE family plasmid maintenance system antidote protein  41.94 
 
 
91 aa  65.9  0.0000000002  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1590  XRE family plasmid maintenance system antidote protein  40.74 
 
 
107 aa  66.2  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  0.0352422  normal 
 
 
-
 
NC_010322  PputGB1_3643  XRE family plasmid maintenance system antidote protein  36.67 
 
 
95 aa  65.1  0.0000000003  Pseudomonas putida GB-1  Bacteria  normal  0.0160538  normal 
 
 
-
 
NC_010508  Bcenmc03_3101  XRE family plasmid maintenance system antidote protein  39.56 
 
 
100 aa  65.1  0.0000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.768418 
 
 
-
 
NC_008060  Bcen_2469  XRE family plasmid maintenance system antidote protein  39.56 
 
 
100 aa  64.7  0.0000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_3083  XRE family plasmid maintenance system antidote protein  39.56 
 
 
100 aa  64.7  0.0000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1963  XRE family plasmid maintenance system antidote protein  39.24 
 
 
99 aa  64.7  0.0000000004  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0393563 
 
 
-
 
NC_007510  Bcep18194_A6433  XRE family plasmid maintenance system antidote protein  39.56 
 
 
100 aa  64.3  0.0000000005  Burkholderia sp. 383  Bacteria  normal  normal  0.294261 
 
 
-
 
NC_011662  Tmz1t_3858  XRE family plasmid maintenance system antidote protein  38 
 
 
105 aa  63.9  0.0000000007  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007950  Bpro_5380  XRE family plasmid maintenance system antidote protein  40.23 
 
 
94 aa  62.8  0.000000001  Polaromonas sp. JS666  Bacteria  normal  0.031339  hitchhiker  0.000847786 
 
 
-
 
NC_011004  Rpal_1484  XRE family plasmid maintenance system antidote protein  39.24 
 
 
107 aa  62.8  0.000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1105  plasmid maintenance system antidote protein, XRE family  40.48 
 
 
90 aa  62.4  0.000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0903859  normal 
 
 
-
 
NC_004578  PSPTO_0422  virulence-associated protein, putative  35.29 
 
 
97 aa  61.6  0.000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1633  plasmid maintenance system antidote protein, XRE family  45.45 
 
 
96 aa  61.6  0.000000003  Halothiobacillus neapolitanus c2  Bacteria  normal  0.110422  n/a   
 
 
-
 
NC_009800  EcHS_A2644  putative addiction module  39.44 
 
 
1365 aa  62  0.000000003  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5444  XRE family plasmid maintenance system antidote protein  41.67 
 
 
109 aa  62  0.000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.401369  normal  0.26731 
 
 
-
 
NC_007964  Nham_0578  XRE family plasmid maintenance system antidote protein  34.09 
 
 
108 aa  61.6  0.000000004  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3765  XRE family plasmid maintenance system antidote protein  35.29 
 
 
97 aa  61.2  0.000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2491  XRE family plasmid maintenance system antidote protein  34.74 
 
 
96 aa  61.2  0.000000004  Marinomonas sp. MWYL1  Bacteria  normal  0.289319  normal 
 
 
-
 
NC_007901  Rfer_4449  XRE family plasmid maintenance system antidote protein  37.93 
 
 
91 aa  61.2  0.000000005  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_3008  XRE family plasmid maintenance system antidote protein  34.21 
 
 
104 aa  60.8  0.000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0372  XRE family plasmid maintenance system antidote protein  32.94 
 
 
96 aa  60.5  0.000000009  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_42030  antitoxin protein  41.46 
 
 
95 aa  60.1  0.000000009  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1677  XRE family plasmid maintenance system antidote protein  40.24 
 
 
93 aa  59.7  0.00000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0697  XRE family transcriptional regulator  35.8 
 
 
101 aa  59.3  0.00000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009999  Sbal195_4593  XRE family plasmid maintenance system antidote protein  43.66 
 
 
1370 aa  57  0.00000008  Shewanella baltica OS195  Bacteria  normal  0.387666  normal  0.556972 
 
 
-
 
NC_007604  Synpcc7942_2319  XRE family plasmid maintenance system antidote protein  52.73 
 
 
72 aa  55.8  0.0000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2823  putative plasmid maintenance system antidote protein  37.65 
 
 
167 aa  55.8  0.0000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2524  XRE family plasmid maintenance system antidote protein  34.94 
 
 
103 aa  55.8  0.0000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0379048  n/a   
 
 
-
 
NC_007925  RPC_4745  XRE family plasmid maintenance system antidote protein  34.94 
 
 
104 aa  55.5  0.0000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.693896  normal 
 
 
-
 
NC_007484  Noc_0437  plasmid maintenance system antidote protein  30.59 
 
 
95 aa  53.1  0.000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.494996  n/a   
 
 
-
 
NC_009511  Swit_2425  XRE family plasmid maintenance system antidote protein  34.12 
 
 
99 aa  53.1  0.000001  Sphingomonas wittichii RW1  Bacteria  normal  0.674074  normal  0.184436 
 
 
-
 
NC_013730  Slin_2499  XRE family plasmid maintenance system antidote protein  34.25 
 
 
101 aa  52.8  0.000001  Spirosoma linguale DSM 74  Bacteria  normal  0.0881387  normal  0.214118 
 
 
-
 
NC_009456  VC0395_0929  putative antidote protein  34.18 
 
 
105 aa  52.4  0.000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1633  plasmid maintenance system antidote protein, XRE family  32.5 
 
 
105 aa  52  0.000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0899701  normal  0.785699 
 
 
-
 
NC_007484  Noc_0415  putative plasmid maintenance system antidote protein VapI  37.14 
 
 
78 aa  52  0.000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3243  plasmid maintenance system antidote protein  31.71 
 
 
102 aa  51.2  0.000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0211861  normal 
 
 
-
 
NC_013037  Dfer_1123  XRE family plasmid maintenance system antidote protein  41.25 
 
 
109 aa  51.2  0.000004  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.0000000000109926  normal  0.590059 
 
 
-
 
NC_007925  RPC_1256  XRE family plasmid maintenance system antidote protein  33.73 
 
 
103 aa  51.2  0.000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0149882 
 
 
-
 
NC_009636  Smed_2319  XRE family plasmid maintenance system antidote protein  38.67 
 
 
127 aa  51.6  0.000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.622069 
 
 
-
 
NC_009719  Plav_0019  XRE family plasmid maintenance system antidote protein  35.06 
 
 
98 aa  51.2  0.000004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191318  normal  0.0141037 
 
 
-
 
NC_007643  Rru_A3068  plasmid maintenance system antidote protein  38.03 
 
 
95 aa  51.2  0.000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.959159  n/a   
 
 
-
 
NC_010814  Glov_0608  XRE family plasmid maintenance system antidote protein  40.54 
 
 
98 aa  51.2  0.000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1105  XRE family plasmid maintenance system antidote protein  32.05 
 
 
105 aa  50.8  0.000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.912318  n/a   
 
 
-
 
NC_011365  Gdia_2425  plasmid maintenance system antidote protein, XRE family  34.12 
 
 
99 aa  50.8  0.000007  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2184  XRE family plasmid maintenance system antidote protein  35 
 
 
102 aa  50.1  0.000009  Sphingomonas wittichii RW1  Bacteria  normal  hitchhiker  0.00000446782 
 
 
-
 
NC_011761  AFE_0089  DNA-binding protein, putative  32.91 
 
 
105 aa  49.7  0.00001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.993479  n/a   
 
 
-
 
NC_009675  Anae109_1543  XRE family plasmid maintenance system antidote protein  29.11 
 
 
118 aa  49.7  0.00001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.167279 
 
 
-
 
NC_009832  Spro_4314  XRE family plasmid maintenance system antidote protein  36.36 
 
 
107 aa  49.7  0.00001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0768  XRE family plasmid maintenance system antidote protein  32.91 
 
 
100 aa  49.7  0.00001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2031  XRE family plasmid maintenance system antidote protein  29.76 
 
 
106 aa  49.7  0.00001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.65469  n/a   
 
 
-
 
NC_011206  Lferr_0091  XRE family plasmid maintenance system antidote protein  32.91 
 
 
105 aa  49.7  0.00001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0431  hypothetical protein  32.53 
 
 
108 aa  49.3  0.00002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.202991  normal 
 
 
-
 
NC_009720  Xaut_0276  XRE family plasmid maintenance system antidote protein  32.53 
 
 
102 aa  48.9  0.00002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.545625  normal  0.0676813 
 
 
-
 
NC_009720  Xaut_2649  XRE family plasmid maintenance system antidote protein  32.53 
 
 
102 aa  48.9  0.00002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.634453  normal 
 
 
-
 
NC_008789  Hhal_1672  XRE family plasmid maintenance system antidote protein  34.21 
 
 
108 aa  47  0.00008  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0834  XRE family plasmid maintenance system antidote protein  31.65 
 
 
102 aa  47  0.00009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.625913  normal 
 
 
-
 
NC_007925  RPC_4141  XRE family plasmid maintenance system antidote protein  30.86 
 
 
101 aa  46.6  0.0001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.267642  normal 
 
 
-
 
NC_009483  Gura_1216  XRE family plasmid maintenance system antidote protein  36.62 
 
 
101 aa  46.6  0.0001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4828  XRE family plasmid maintenance system antidote protein  30.86 
 
 
101 aa  47  0.0001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1065  plasmid maintenance system antidote protein  32.89 
 
 
101 aa  46.2  0.0002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4148  XRE family plasmid maintenance system antidote protein  29.63 
 
 
101 aa  45.4  0.0002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.287171  normal 
 
 
-
 
NC_008740  Maqu_3198  XRE family plasmid maintenance system antidote protein  31.94 
 
 
104 aa  45.8  0.0002  Marinobacter aquaeolei VT8  Bacteria  normal  0.562378  n/a   
 
 
-
 
NC_010725  Mpop_2927  XRE family plasmid maintenance system antidote protein  32.91 
 
 
97 aa  45.4  0.0002  Methylobacterium populi BJ001  Bacteria  normal  0.225345  normal 
 
 
-
 
NC_006369  lpl1093  hypothetical protein  34.72 
 
 
107 aa  45.4  0.0003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013441  Gbro_2894  addiction module antidote protein, HigA family  33.33 
 
 
119 aa  45.1  0.0003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.285023  n/a   
 
 
-
 
NC_007925  RPC_3187  XRE family plasmid maintenance system antidote protein  36 
 
 
94 aa  45.4  0.0003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0487579  normal 
 
 
-
 
NC_007517  Gmet_3001  XRE family plasmid maintenance system antidote protein  34.15 
 
 
100 aa  44.7  0.0004  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.770477 
 
 
-
 
NC_011901  Tgr7_0043  XRE family plasmid maintenance system antidote protein  35.37 
 
 
99 aa  45.1  0.0004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0412  XRE family plasmid maintenance system antidote protein  30.77 
 
 
100 aa  44.3  0.0006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4192  XRE family plasmid maintenance system antidote protein  30.77 
 
 
99 aa  44.3  0.0006  Pseudomonas putida F1  Bacteria  normal  0.322269  normal 
 
 
-
 
NC_010717  PXO_03903  addiction module antidote protein, HigA family  33.33 
 
 
96 aa  44.3  0.0006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.433469  n/a   
 
 
-
 
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