185 homologs were found in PanDaTox collection
for query gene PputGB1_3643 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_3643  XRE family plasmid maintenance system antidote protein  100 
 
 
95 aa  192  1e-48  Pseudomonas putida GB-1  Bacteria  normal  0.0160538  normal 
 
 
-
 
NC_012560  Avin_42030  antitoxin protein  69.23 
 
 
95 aa  137  4.999999999999999e-32  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1677  XRE family plasmid maintenance system antidote protein  67.74 
 
 
93 aa  134  3.0000000000000003e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0422  virulence-associated protein, putative  69.32 
 
 
97 aa  133  7.000000000000001e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009467  Acry_3241  XRE family plasmid maintenance system antidote protein  62.37 
 
 
95 aa  119  9.999999999999999e-27  Acidiphilium cryptum JF-5  Bacteria  normal  0.0714927  n/a   
 
 
-
 
NC_007484  Noc_0697  XRE family transcriptional regulator  67.03 
 
 
101 aa  118  3e-26  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_3101  XRE family plasmid maintenance system antidote protein  59.78 
 
 
100 aa  107  8.000000000000001e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.768418 
 
 
-
 
NC_008060  Bcen_2469  XRE family plasmid maintenance system antidote protein  59.78 
 
 
100 aa  106  8.000000000000001e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_3083  XRE family plasmid maintenance system antidote protein  59.78 
 
 
100 aa  106  8.000000000000001e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1105  plasmid maintenance system antidote protein, XRE family  59.09 
 
 
90 aa  103  6e-22  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0903859  normal 
 
 
-
 
NC_011662  Tmz1t_3858  XRE family plasmid maintenance system antidote protein  54.64 
 
 
105 aa  101  3e-21  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6433  XRE family plasmid maintenance system antidote protein  54.35 
 
 
100 aa  100  7e-21  Burkholderia sp. 383  Bacteria  normal  normal  0.294261 
 
 
-
 
NC_013422  Hneap_1633  plasmid maintenance system antidote protein, XRE family  51.72 
 
 
96 aa  94  6e-19  Halothiobacillus neapolitanus c2  Bacteria  normal  0.110422  n/a   
 
 
-
 
NC_007484  Noc_1291  XRE family transcriptional regulator  54.88 
 
 
98 aa  92  2e-18  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0571  XRE family transcriptional regulator  49.46 
 
 
107 aa  91.3  4e-18  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008608  Ppro_3836  XRE family plasmid maintenance system antidote protein  46.24 
 
 
96 aa  89.4  1e-17  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1144  XRE family plasmid maintenance system antidote protein  53.33 
 
 
91 aa  87  7e-17  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0405  XRE family plasmid maintenance system antidote protein  53.33 
 
 
91 aa  87  7e-17  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0361  XRE family plasmid maintenance system antidote protein  52.22 
 
 
91 aa  84.7  4e-16  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3818  XRE family plasmid maintenance system antidote protein  44.09 
 
 
94 aa  83.2  0.000000000000001  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00442118  n/a   
 
 
-
 
NC_013733  Slin_6998  plasmid maintenance system antidote protein, XRE family  50 
 
 
95 aa  82  0.000000000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.337811  normal  0.775047 
 
 
-
 
NC_007950  Bpro_5380  XRE family plasmid maintenance system antidote protein  47.78 
 
 
94 aa  79.7  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  0.031339  hitchhiker  0.000847786 
 
 
-
 
NC_009943  Dole_2889  XRE family plasmid maintenance system antidote protein  45.45 
 
 
104 aa  79.7  0.00000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.955801  n/a   
 
 
-
 
NC_007963  Csal_2342  XRE family plasmid maintenance system antidote protein  44.09 
 
 
93 aa  79.3  0.00000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_1633  plasmid maintenance system antidote protein, XRE family  45.68 
 
 
105 aa  78.6  0.00000000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0899701  normal  0.785699 
 
 
-
 
NC_009654  Mmwyl1_2491  XRE family plasmid maintenance system antidote protein  45 
 
 
96 aa  77.8  0.00000000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.289319  normal 
 
 
-
 
NC_007901  Rfer_4449  XRE family plasmid maintenance system antidote protein  44.44 
 
 
91 aa  76.3  0.0000000000001  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_013422  Hneap_0372  XRE family plasmid maintenance system antidote protein  43.21 
 
 
96 aa  75.9  0.0000000000002  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0437  plasmid maintenance system antidote protein  40.51 
 
 
95 aa  75.5  0.0000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.494996  n/a   
 
 
-
 
NC_008228  Patl_3765  XRE family plasmid maintenance system antidote protein  36.14 
 
 
97 aa  75.9  0.0000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2779  plasmid maintenance system antidote protein  43.01 
 
 
110 aa  73.6  0.000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.48213  n/a   
 
 
-
 
NC_009719  Plav_0019  XRE family plasmid maintenance system antidote protein  47.44 
 
 
98 aa  72.8  0.000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191318  normal  0.0141037 
 
 
-
 
NC_013204  Elen_1062  XRE family plasmid maintenance system antidote protein  39.76 
 
 
102 aa  72.8  0.000000000002  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000765045 
 
 
-
 
NC_008751  Dvul_1455  XRE family plasmid maintenance system antidote protein  44.87 
 
 
100 aa  71.2  0.000000000004  Desulfovibrio vulgaris DP4  Bacteria  normal  0.077029  normal 
 
 
-
 
NC_010725  Mpop_1590  XRE family plasmid maintenance system antidote protein  36.67 
 
 
107 aa  71.2  0.000000000005  Methylobacterium populi BJ001  Bacteria  normal  0.0352422  normal 
 
 
-
 
NC_013037  Dfer_4500  XRE family plasmid maintenance system antidote protein  41.56 
 
 
99 aa  69.3  0.00000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.550402 
 
 
-
 
NC_013037  Dfer_2505  XRE family plasmid maintenance system antidote protein  33.71 
 
 
103 aa  69.3  0.00000000002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000574166  normal 
 
 
-
 
NC_007484  Noc_0415  putative plasmid maintenance system antidote protein VapI  53.23 
 
 
78 aa  68.2  0.00000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3008  XRE family plasmid maintenance system antidote protein  42.67 
 
 
104 aa  68.2  0.00000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2571  XRE family plasmid maintenance system antidote protein  41.25 
 
 
109 aa  67.8  0.00000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2319  XRE family plasmid maintenance system antidote protein  51.72 
 
 
72 aa  65.9  0.0000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2430  plasmid maintenance system antidote protein  37.18 
 
 
108 aa  65.9  0.0000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.216096  n/a   
 
 
-
 
NC_004349  SO_A0023  plasmid maintenance system antidote protein HigA  36.67 
 
 
99 aa  65.1  0.0000000003  Shewanella oneidensis MR-1  Bacteria  normal  0.0227137  n/a   
 
 
-
 
NC_007964  Nham_0578  XRE family plasmid maintenance system antidote protein  38.3 
 
 
108 aa  64.7  0.0000000004  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4745  XRE family plasmid maintenance system antidote protein  42.67 
 
 
104 aa  63.9  0.0000000007  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.693896  normal 
 
 
-
 
NC_011761  AFE_0089  DNA-binding protein, putative  41.03 
 
 
105 aa  62.8  0.000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.993479  n/a   
 
 
-
 
NC_008686  Pden_1963  XRE family plasmid maintenance system antidote protein  43.9 
 
 
99 aa  62.8  0.000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0393563 
 
 
-
 
NC_011206  Lferr_0091  XRE family plasmid maintenance system antidote protein  41.03 
 
 
105 aa  62.8  0.000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009999  Sbal195_4593  XRE family plasmid maintenance system antidote protein  40 
 
 
1370 aa  61.6  0.000000003  Shewanella baltica OS195  Bacteria  normal  0.387666  normal  0.556972 
 
 
-
 
NC_008740  Maqu_3198  XRE family plasmid maintenance system antidote protein  34.09 
 
 
104 aa  61.2  0.000000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.562378  n/a   
 
 
-
 
NC_013730  Slin_2499  XRE family plasmid maintenance system antidote protein  37.5 
 
 
101 aa  60.5  0.000000008  Spirosoma linguale DSM 74  Bacteria  normal  0.0881387  normal  0.214118 
 
 
-
 
NC_013037  Dfer_1123  XRE family plasmid maintenance system antidote protein  33.67 
 
 
109 aa  60.5  0.000000008  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.0000000000109926  normal  0.590059 
 
 
-
 
NC_007413  Ava_3243  plasmid maintenance system antidote protein  33.33 
 
 
102 aa  60.1  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0211861  normal 
 
 
-
 
NC_009511  Swit_2425  XRE family plasmid maintenance system antidote protein  37.5 
 
 
99 aa  60.1  0.00000001  Sphingomonas wittichii RW1  Bacteria  normal  0.674074  normal  0.184436 
 
 
-
 
NC_007514  Cag_1487  XRE family plasmid maintenance system antidote protein  32.05 
 
 
103 aa  58.9  0.00000002  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000000000645872  n/a   
 
 
-
 
NC_011761  AFE_1754  virulence-associated protein, putative  32.56 
 
 
104 aa  59.3  0.00000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0614542  n/a   
 
 
-
 
NC_009485  BBta_0902  hypothetical protein  34.48 
 
 
199 aa  58.9  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4192  XRE family plasmid maintenance system antidote protein  34.62 
 
 
99 aa  58.9  0.00000002  Pseudomonas putida F1  Bacteria  normal  0.322269  normal 
 
 
-
 
NC_009800  EcHS_A2644  putative addiction module  43.66 
 
 
1365 aa  59.3  0.00000002  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008320  Shewmr7_4040  XRE family plasmid maintenance system antidote protein  34.18 
 
 
98 aa  58.2  0.00000004  Shewanella sp. MR-7  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2524  XRE family plasmid maintenance system antidote protein  38.67 
 
 
103 aa  57.8  0.00000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0379048  n/a   
 
 
-
 
NC_013530  Xcel_0947  XRE family plasmid maintenance system antidote protein  33.33 
 
 
106 aa  57.8  0.00000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2425  plasmid maintenance system antidote protein, XRE family  37.5 
 
 
99 aa  57.8  0.00000005  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009671  Oant_4678  XRE family plasmid maintenance system antidote protein  37.5 
 
 
98 aa  57.8  0.00000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.171358  n/a   
 
 
-
 
NC_011004  Rpal_1484  XRE family plasmid maintenance system antidote protein  39.02 
 
 
107 aa  57.4  0.00000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0224  plasmid maintenance system antidote protein, XRE family  40 
 
 
99 aa  57.4  0.00000006  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.657872  normal  0.19652 
 
 
-
 
NC_013037  Dfer_4918  XRE family plasmid maintenance system antidote protein  32.93 
 
 
99 aa  57  0.00000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.128758 
 
 
-
 
NC_002947  PP_1585  antidote protein, putative  33.33 
 
 
99 aa  57  0.00000009  Pseudomonas putida KT2440  Bacteria  normal  normal  0.315858 
 
 
-
 
NC_007964  Nham_2852  XRE family plasmid maintenance system antidote protein  37.18 
 
 
100 aa  57  0.00000009  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008738  Maqu_4180  XRE family plasmid maintenance system antidote protein  42.68 
 
 
132 aa  57  0.00000009  Marinobacter aquaeolei VT8  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1093  hypothetical protein  33.33 
 
 
107 aa  56.2  0.0000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_0608  XRE family plasmid maintenance system antidote protein  37.68 
 
 
98 aa  56.6  0.0000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3935  XRE family plasmid maintenance system antidote protein  40 
 
 
123 aa  55.5  0.0000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.155055 
 
 
-
 
NC_010511  M446_5444  XRE family plasmid maintenance system antidote protein  37.08 
 
 
109 aa  55.8  0.0000002  Methylobacterium sp. 4-46  Bacteria  normal  0.401369  normal  0.26731 
 
 
-
 
NC_008825  Mpe_A2823  putative plasmid maintenance system antidote protein  39.47 
 
 
167 aa  55.8  0.0000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03903  addiction module antidote protein, HigA family  38.16 
 
 
96 aa  55.5  0.0000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.433469  n/a   
 
 
-
 
NC_007517  Gmet_2972  XRE family plasmid maintenance system antidote protein  37.5 
 
 
101 aa  54.7  0.0000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1548  XRE family plasmid maintenance system antidote protein  33.33 
 
 
363 aa  54.7  0.0000004  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0921  hypothetical protein  41.43 
 
 
151 aa  54.7  0.0000004  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0768  XRE family plasmid maintenance system antidote protein  31.58 
 
 
100 aa  54.7  0.0000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0929  putative antidote protein  36.25 
 
 
105 aa  54.3  0.0000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0750  XRE family plasmid maintenance system antidote protein  32.86 
 
 
117 aa  53.9  0.0000006  Jonesia denitrificans DSM 20603  Bacteria  normal  0.236771  normal 
 
 
-
 
NC_010681  Bphyt_3070  XRE family plasmid maintenance system antidote protein  41.43 
 
 
151 aa  53.9  0.0000007  Burkholderia phytofirmans PsJN  Bacteria  normal  0.314371  normal 
 
 
-
 
NC_007925  RPC_3187  XRE family plasmid maintenance system antidote protein  36.47 
 
 
94 aa  53.9  0.0000007  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0487579  normal 
 
 
-
 
NC_007404  Tbd_0672  plasmid maintenance system antidote protein  38.89 
 
 
171 aa  53.1  0.000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.15068  normal  0.669698 
 
 
-
 
NC_008639  Cpha266_1407  XRE family plasmid maintenance system antidote protein  30.77 
 
 
103 aa  53.1  0.000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.117941  n/a   
 
 
-
 
NC_009675  Anae109_1543  XRE family plasmid maintenance system antidote protein  35 
 
 
118 aa  53.5  0.000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.167279 
 
 
-
 
NC_008255  CHU_0642  hypothetical protein  35.71 
 
 
96 aa  52.8  0.000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.000000446232  normal  0.460246 
 
 
-
 
NC_011901  Tgr7_0043  XRE family plasmid maintenance system antidote protein  35.29 
 
 
99 aa  52.4  0.000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2693  plasmid maintenance system antidote protein, XRE family  32.93 
 
 
92 aa  52.8  0.000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1377  XRE family plasmid maintenance system antidote protein  31.51 
 
 
99 aa  52.8  0.000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2927  XRE family plasmid maintenance system antidote protein  35.14 
 
 
97 aa  52.8  0.000002  Methylobacterium populi BJ001  Bacteria  normal  0.225345  normal 
 
 
-
 
NC_011666  Msil_2106  XRE family plasmid maintenance system antidote protein  34.25 
 
 
93 aa  51.6  0.000004  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_3236  XRE family plasmid maintenance system antidote protein  37.33 
 
 
94 aa  51.6  0.000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.390775  normal 
 
 
-
 
NC_010338  Caul_3225  XRE family plasmid maintenance system antidote protein  34.21 
 
 
106 aa  51.2  0.000004  Caulobacter sp. K31  Bacteria  normal  normal  0.114466 
 
 
-
 
NC_012560  Avin_27690  plasmid maintenance system antidote protein  36.49 
 
 
99 aa  51.6  0.000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4131  XRE family plasmid maintenance system antidote protein  32.86 
 
 
102 aa  51.6  0.000004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0937778  normal  0.0702268 
 
 
-
 
NC_011901  Tgr7_2786  XRE family plasmid maintenance system antidote protein  34.21 
 
 
106 aa  51.6  0.000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  unclonable  0.000000094081  n/a   
 
 
-
 
NC_008009  Acid345_3424  XRE family plasmid maintenance system antidote protein  38.57 
 
 
98 aa  51.2  0.000005  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2492  XRE family plasmid maintenance system antidote protein  32.53 
 
 
368 aa  51.2  0.000005  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
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