91 homologs were found in PanDaTox collection
for query gene Slin_0859 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_0859  putative transcriptional regulator, Crp/Fnr family  100 
 
 
133 aa  277  4e-74  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  36.84 
 
 
194 aa  70.9  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  36.17 
 
 
185 aa  68.6  0.00000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  34.04 
 
 
192 aa  64.3  0.0000000006  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  36.17 
 
 
204 aa  62.8  0.000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  32.95 
 
 
195 aa  62.8  0.000000001  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  32.99 
 
 
198 aa  62.4  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  37.89 
 
 
196 aa  62.4  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  32.98 
 
 
202 aa  61.6  0.000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_013730  Slin_2093  putative transcriptional regulator, Crp/Fnr family  35.05 
 
 
198 aa  61.2  0.000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.177732  normal  0.144661 
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  38.3 
 
 
201 aa  61.6  0.000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  35.35 
 
 
191 aa  59.3  0.00000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  31.62 
 
 
187 aa  58.9  0.00000002  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  32.98 
 
 
227 aa  58.9  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  35.11 
 
 
189 aa  58.5  0.00000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  32.41 
 
 
190 aa  58.2  0.00000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  32.29 
 
 
208 aa  57.8  0.00000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  34.04 
 
 
175 aa  57.4  0.00000007  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  32.41 
 
 
190 aa  57  0.00000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  39.56 
 
 
199 aa  57  0.00000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  30.77 
 
 
187 aa  56.2  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6135  putative transcriptional regulator, Crp/Fnr family  27.84 
 
 
192 aa  56.2  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  28.04 
 
 
194 aa  56.2  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  35.71 
 
 
194 aa  56.6  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  34.04 
 
 
196 aa  55.8  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
189 aa  55.1  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  35.56 
 
 
200 aa  55.1  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  27.27 
 
 
185 aa  55.1  0.0000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  32.71 
 
 
190 aa  54.7  0.0000004  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_013037  Dfer_1290  putative transcriptional regulator, Crp/Fnr family  29.63 
 
 
197 aa  54.7  0.0000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.981443  normal  0.710013 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  34.02 
 
 
193 aa  54.3  0.0000006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  32.98 
 
 
196 aa  54.3  0.0000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1119  putative transcriptional regulator, Crp/Fnr family  30.43 
 
 
200 aa  53.9  0.0000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.301792  normal  0.283785 
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  33.7 
 
 
189 aa  53.9  0.0000008  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  31.31 
 
 
187 aa  53.9  0.0000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  29.79 
 
 
208 aa  53.5  0.0000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  27.66 
 
 
189 aa  53.1  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  32.94 
 
 
197 aa  52.4  0.000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  34.34 
 
 
168 aa  52.4  0.000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  31.31 
 
 
192 aa  52.4  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  24.77 
 
 
191 aa  52  0.000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  30.58 
 
 
193 aa  51.6  0.000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  28.72 
 
 
194 aa  51.6  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  38.46 
 
 
192 aa  51.2  0.000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  30.21 
 
 
197 aa  51.2  0.000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013132  Cpin_4604  putative transcriptional regulator, Crp/Fnr family  29.29 
 
 
194 aa  50.8  0.000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.31459  normal 
 
 
-
 
NC_013132  Cpin_2892  putative transcriptional regulator, Crp/Fnr family  29.7 
 
 
192 aa  50.8  0.000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  29.59 
 
 
198 aa  50.4  0.000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_008255  CHU_2540  cyclic nucleotide binding regulatory protein  29.59 
 
 
211 aa  49.7  0.00001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.90473  normal 
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  33.01 
 
 
191 aa  49.7  0.00001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  29.25 
 
 
188 aa  49.3  0.00002  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  26.8 
 
 
192 aa  49.3  0.00002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  37.14 
 
 
191 aa  49.3  0.00002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  29.09 
 
 
194 aa  48.9  0.00002  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_013061  Phep_4057  cyclic nucleotide-binding  33.67 
 
 
196 aa  48.5  0.00003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.116691  normal 
 
 
-
 
NC_013132  Cpin_4313  putative transcriptional regulator, Crp/Fnr family  27.55 
 
 
189 aa  48.5  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.352776  normal  0.0805957 
 
 
-
 
NC_013132  Cpin_1758  putative transcriptional regulator, Crp/Fnr family  33.7 
 
 
199 aa  47.4  0.00007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.972019  normal 
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  26.92 
 
 
192 aa  47.4  0.00007  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  28 
 
 
208 aa  47.4  0.00007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_013037  Dfer_2871  putative transcriptional regulator, Crp/Fnr family  27.78 
 
 
193 aa  47  0.00009  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00453056  normal  0.032413 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  28.71 
 
 
175 aa  46.6  0.0001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_013730  Slin_0259  putative transcriptional regulator, Crp/Fnr family  50 
 
 
179 aa  45.4  0.0002  Spirosoma linguale DSM 74  Bacteria  normal  0.0493403  normal  0.0138145 
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  27.66 
 
 
189 aa  45.4  0.0002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2881  putative transcriptional regulator, Crp/Fnr family  28.57 
 
 
187 aa  45.1  0.0003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  27.66 
 
 
189 aa  45.4  0.0003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_013730  Slin_3811  putative transcriptional regulator, Crp/Fnr family  30.1 
 
 
197 aa  44.3  0.0005  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.0000424925  normal  0.837205 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  29.79 
 
 
195 aa  44.3  0.0005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013162  Coch_0532  cyclic nucleotide-binding protein  28.57 
 
 
189 aa  44.3  0.0005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  28.87 
 
 
213 aa  44.3  0.0005  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  30.21 
 
 
200 aa  44.3  0.0006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4692  putative transcriptional regulator, Crp/Fnr family  31.37 
 
 
199 aa  43.9  0.0007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.177922  hitchhiker  0.00287495 
 
 
-
 
NC_013162  Coch_0935  cyclic nucleotide-binding protein  29.46 
 
 
166 aa  43.9  0.0007  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0225021  n/a   
 
 
-
 
NC_013061  Phep_3758  cyclic nucleotide-binding  27.45 
 
 
199 aa  43.1  0.001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  26.21 
 
 
189 aa  43.1  0.001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  26.67 
 
 
186 aa  43.1  0.001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  39.53 
 
 
194 aa  42.7  0.002  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  26.92 
 
 
194 aa  42.7  0.002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  31.07 
 
 
194 aa  42.4  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  25.84 
 
 
188 aa  42  0.003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  24.21 
 
 
189 aa  42  0.003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  29.79 
 
 
184 aa  41.6  0.003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  26.53 
 
 
191 aa  41.6  0.003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_013132  Cpin_6710  putative transcriptional regulator, Crp/Fnr family  26.67 
 
 
189 aa  41.6  0.004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  29.47 
 
 
193 aa  41.6  0.004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  51.72 
 
 
194 aa  41.2  0.004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  42.86 
 
 
208 aa  41.2  0.005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4326  putative transcriptional regulator, Crp/Fnr family  30.23 
 
 
192 aa  41.2  0.005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.476237  normal  0.0297051 
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  26.21 
 
 
194 aa  40.8  0.006  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  27.27 
 
 
191 aa  40.8  0.006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_008048  Sala_3164  cyclic nucleotide-binding protein  44.12 
 
 
199 aa  40.8  0.006  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  27.55 
 
 
196 aa  40  0.01  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>