More than 300 homologs were found in PanDaTox collection
for query gene Shel_13220 on replicon NC_013165
Organism: Slackia heliotrinireducens DSM 20476



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013204  Elen_1671  carbamoyl-phosphate synthase, small subunit  64.29 
 
 
504 aa  638    Eggerthella lenta DSM 2243  Bacteria  decreased coverage  0.00077424  hitchhiker  0.00974752 
 
 
-
 
NC_013165  Shel_13220  carbamoyl-phosphate synthase small subunit  100 
 
 
467 aa  963    Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.363669  normal  0.801105 
 
 
-
 
NC_013203  Apar_0612  carbamoyl-phosphate synthase, small subunit  62.35 
 
 
417 aa  514  1e-144  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.348525 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  51.24 
 
 
376 aa  406  1.0000000000000001e-112  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  51.61 
 
 
373 aa  389  1e-107  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  51.61 
 
 
373 aa  389  1e-107  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  52.11 
 
 
373 aa  391  1e-107  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  49.14 
 
 
377 aa  390  1e-107  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  50.87 
 
 
391 aa  387  1e-106  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  49.51 
 
 
383 aa  381  1e-104  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  48.26 
 
 
372 aa  380  1e-104  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  49.13 
 
 
374 aa  378  1e-103  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  48.89 
 
 
374 aa  374  1e-102  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  47.52 
 
 
373 aa  374  1e-102  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  48.89 
 
 
373 aa  372  1e-102  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  48.15 
 
 
373 aa  368  1e-100  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  48.4 
 
 
373 aa  363  5.0000000000000005e-99  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  47.67 
 
 
374 aa  362  7.0000000000000005e-99  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  47.67 
 
 
374 aa  362  9e-99  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  48.76 
 
 
391 aa  360  2e-98  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  49.38 
 
 
386 aa  357  2.9999999999999997e-97  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  49.26 
 
 
386 aa  357  2.9999999999999997e-97  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  47.7 
 
 
389 aa  353  2.9999999999999997e-96  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  46.63 
 
 
380 aa  353  2.9999999999999997e-96  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  46.63 
 
 
380 aa  353  2.9999999999999997e-96  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  46.57 
 
 
384 aa  353  5e-96  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  48.77 
 
 
392 aa  353  5e-96  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  45.86 
 
 
361 aa  352  7e-96  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  49.01 
 
 
392 aa  351  1e-95  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0950  carbamoyl-phosphate synthase small subunit  44.31 
 
 
357 aa  350  3e-95  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  47.06 
 
 
379 aa  350  3e-95  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  47.19 
 
 
388 aa  349  8e-95  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_011365  Gdia_3032  carbamoyl phosphate synthase small subunit  45.43 
 
 
467 aa  348  2e-94  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.11486  normal  0.0418192 
 
 
-
 
NC_009719  Plav_2314  carbamoyl-phosphate synthase, small subunit  45.37 
 
 
402 aa  346  4e-94  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0322598 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  46.25 
 
 
359 aa  345  1e-93  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  47.07 
 
 
385 aa  345  1e-93  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  46.53 
 
 
374 aa  343  5e-93  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  44.17 
 
 
369 aa  342  7e-93  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_013411  GYMC61_1916  carbamoyl phosphate synthase small subunit  46.15 
 
 
364 aa  340  2e-92  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  45.07 
 
 
367 aa  340  2.9999999999999998e-92  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1540  carbamoyl-phosphate synthase, small subunit  42.68 
 
 
356 aa  340  2.9999999999999998e-92  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  45.89 
 
 
372 aa  339  7e-92  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  43.58 
 
 
369 aa  338  9.999999999999999e-92  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  43 
 
 
393 aa  337  2.9999999999999997e-91  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_012793  GWCH70_1046  carbamoyl phosphate synthase small subunit  44.14 
 
 
364 aa  337  3.9999999999999995e-91  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  44.84 
 
 
358 aa  336  5e-91  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  43.6 
 
 
384 aa  336  5.999999999999999e-91  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_010184  BcerKBAB4_3714  carbamoyl phosphate synthase small subunit  44.75 
 
 
365 aa  335  1e-90  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.971369  n/a   
 
 
-
 
NC_007335  PMN2A_0259  carbamoyl phosphate synthase small subunit  43.35 
 
 
384 aa  333  4e-90  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  44.93 
 
 
381 aa  333  4e-90  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  44.44 
 
 
385 aa  333  4e-90  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_007643  Rru_A2885  carbamoyl-phosphate synthase small subunit  45.17 
 
 
389 aa  333  5e-90  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  46.32 
 
 
393 aa  332  9e-90  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  44.2 
 
 
379 aa  332  9e-90  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  44.15 
 
 
369 aa  332  1e-89  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  46.02 
 
 
385 aa  331  2e-89  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  44.8 
 
 
381 aa  330  3e-89  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  44.04 
 
 
371 aa  330  3e-89  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  43.83 
 
 
390 aa  330  4e-89  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  44.8 
 
 
381 aa  330  4e-89  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  43.49 
 
 
367 aa  330  4e-89  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  43.83 
 
 
390 aa  330  4e-89  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  44.8 
 
 
381 aa  330  5.0000000000000004e-89  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  44.8 
 
 
381 aa  330  5.0000000000000004e-89  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  44.8 
 
 
381 aa  330  5.0000000000000004e-89  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  44.8 
 
 
381 aa  330  5.0000000000000004e-89  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009972  Haur_4242  carbamoyl-phosphate synthase, small subunit  45.45 
 
 
376 aa  329  7e-89  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  44.44 
 
 
397 aa  328  9e-89  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  45.85 
 
 
381 aa  328  9e-89  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_003909  BCE_3932  carbamoyl phosphate synthase small subunit  44.25 
 
 
365 aa  328  1.0000000000000001e-88  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  44.55 
 
 
381 aa  328  1.0000000000000001e-88  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_011658  BCAH187_A3936  carbamoyl phosphate synthase small subunit  44.25 
 
 
365 aa  328  1.0000000000000001e-88  Bacillus cereus AH187  Bacteria  normal  0.0146429  n/a   
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  45.3 
 
 
420 aa  328  1.0000000000000001e-88  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  45.37 
 
 
381 aa  328  1.0000000000000001e-88  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_005945  BAS3738  carbamoyl phosphate synthase small subunit  44 
 
 
365 aa  327  2.0000000000000001e-88  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3629  carbamoyl phosphate synthase small subunit  44 
 
 
365 aa  327  2.0000000000000001e-88  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  44.55 
 
 
381 aa  327  2.0000000000000001e-88  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3901  carbamoyl phosphate synthase small subunit  44 
 
 
365 aa  327  2.0000000000000001e-88  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000355158 
 
 
-
 
NC_007530  GBAA_4026  carbamoyl phosphate synthase small subunit  44 
 
 
365 aa  327  2.0000000000000001e-88  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0667428  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  46.36 
 
 
379 aa  327  2.0000000000000001e-88  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_011725  BCB4264_A3985  carbamoyl phosphate synthase small subunit  44.5 
 
 
365 aa  327  2.0000000000000001e-88  Bacillus cereus B4264  Bacteria  normal  0.289727  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  46.17 
 
 
390 aa  327  2.0000000000000001e-88  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  45.19 
 
 
399 aa  327  3e-88  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  45.5 
 
 
379 aa  327  3e-88  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  44.93 
 
 
387 aa  327  4.0000000000000003e-88  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  45.61 
 
 
382 aa  327  4.0000000000000003e-88  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  45.61 
 
 
382 aa  326  5e-88  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_2483  carbamoyl-phosphate synthase, small subunit  41.25 
 
 
359 aa  326  5e-88  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.0000863462  n/a   
 
 
-
 
NC_013205  Aaci_1307  carbamoyl-phosphate synthase, small subunit  45.52 
 
 
368 aa  326  6e-88  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1256  carbamoyl phosphate synthase small subunit  44 
 
 
365 aa  326  6e-88  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  45.68 
 
 
376 aa  325  7e-88  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  43.55 
 
 
366 aa  326  7e-88  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  43.78 
 
 
428 aa  325  9e-88  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  45.37 
 
 
391 aa  325  9e-88  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  45.15 
 
 
386 aa  325  1e-87  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_006274  BCZK3646  carbamoyl phosphate synthase small subunit  43.75 
 
 
365 aa  325  1e-87  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  45.19 
 
 
379 aa  325  1e-87  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  45.37 
 
 
382 aa  325  1e-87  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  45.63 
 
 
386 aa  325  1e-87  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  45.59 
 
 
420 aa  325  1e-87  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
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