More than 300 homologs were found in PanDaTox collection
for query gene PP_3354 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3354  acyl-CoA dehydrogenase, ferrulic acid biotransformation protein, putative  100 
 
 
584 aa  1171    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2404  acyl-CoA dehydrogenase domain-containing protein  97.09 
 
 
581 aa  1105    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_14270  acyl-CoA dehydrogenase  65.7 
 
 
585 aa  726    Azotobacter vinelandii DJ  Bacteria  normal  0.0419167  n/a   
 
 
-
 
NC_010501  PputW619_2051  acyl-CoA dehydrogenase domain-containing protein  78.97 
 
 
582 aa  910    Pseudomonas putida W619  Bacteria  normal  0.763745  normal  0.942384 
 
 
-
 
NC_010002  Daci_2761  acyl-CoA dehydrogenase domain-containing protein  57.85 
 
 
596 aa  611  9.999999999999999e-175  Delftia acidovorans SPH-1  Bacteria  normal  0.431568  normal 
 
 
-
 
NC_010524  Lcho_0987  acyl-CoA dehydrogenase domain-containing protein  52.19 
 
 
597 aa  544  1e-153  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_0264  acyl-CoA dehydrogenase-like  53.02 
 
 
569 aa  534  1e-150  Rhodoferax ferrireducens T118  Bacteria  normal  0.39187  n/a   
 
 
-
 
NC_008542  Bcen2424_2721  acyl-CoA dehydrogenase domain-containing protein  46.06 
 
 
595 aa  521  1e-146  Burkholderia cenocepacia HI2424  Bacteria  normal  0.440911  n/a   
 
 
-
 
NC_010508  Bcenmc03_2748  acyl-CoA dehydrogenase domain-containing protein  46.06 
 
 
595 aa  521  1e-146  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.139086  normal 
 
 
-
 
NC_008060  Bcen_2109  acyl-CoA dehydrogenase-like  46.06 
 
 
595 aa  521  1e-146  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0473  putative acyl-CoA dehydrogenase oxidoreductase protein  45.25 
 
 
595 aa  514  1e-144  Ralstonia solanacearum GMI1000  Bacteria  normal  0.390432  normal 
 
 
-
 
NC_006348  BMA0197  acyl-CoA dehydrogenase domain-containing protein  47.14 
 
 
595 aa  514  1e-144  Burkholderia mallei ATCC 23344  Bacteria  normal  0.908056  n/a   
 
 
-
 
NC_009076  BURPS1106A_0695  acyl-CoA dehydrogenase domain-containing protein  46.79 
 
 
595 aa  512  1e-144  Burkholderia pseudomallei 1106a  Bacteria  normal  0.832914  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2748  acyl-CoA dehydrogenase domain-containing protein  47.14 
 
 
595 aa  514  1e-144  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0857  acyl-CoA dehydrogenase domain-containing protein  46.79 
 
 
595 aa  512  1e-144  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2410  acyl-CoA dehydrogenase domain-containing protein  47.14 
 
 
595 aa  514  1e-144  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2330  acyl-CoA dehydrogenase domain-containing protein  47.14 
 
 
595 aa  514  1e-144  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A6048  Acyl-CoA dehydrogenase-like  45.24 
 
 
599 aa  513  1e-144  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0564  acyl-CoA dehydrogenase domain-containing protein  46.62 
 
 
595 aa  512  1e-144  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0680  acyl-CoA dehydrogenase domain-containing protein  46.79 
 
 
595 aa  512  1e-144  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2639  acyl-CoA dehydrogenase domain-containing protein  46.97 
 
 
595 aa  514  1e-144  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0601004  normal  0.257028 
 
 
-
 
NC_010622  Bphy_0385  acyl-CoA dehydrogenase domain-containing protein  45.96 
 
 
595 aa  514  1e-144  Burkholderia phymatum STM815  Bacteria  normal  0.840786  normal  0.461604 
 
 
-
 
NC_010084  Bmul_0578  acyl-CoA dehydrogenase domain-containing protein  46.78 
 
 
595 aa  511  1e-143  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3101  acyl-CoA dehydrogenase domain-containing protein  47.64 
 
 
592 aa  506  9.999999999999999e-143  Pseudomonas mendocina ymp  Bacteria  normal  0.165418  normal 
 
 
-
 
NC_010682  Rpic_0348  acyl-CoA dehydrogenase domain protein  45.69 
 
 
595 aa  507  9.999999999999999e-143  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0363  acyl-CoA dehydrogenase domain protein  45.17 
 
 
595 aa  502  1e-141  Ralstonia pickettii 12D  Bacteria  normal  0.84094  normal 
 
 
-
 
NC_008781  Pnap_0806  acyl-CoA dehydrogenase domain-containing protein  52.12 
 
 
563 aa  504  1e-141  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4038  putative acyl-CoA dehydrogenase oxidoreductase  46.42 
 
 
595 aa  497  1e-139  Burkholderia xenovorans LB400  Bacteria  normal  0.922091  normal  0.0585748 
 
 
-
 
NC_007973  Rmet_0385  acyl-CoA dehydrogenase-like protein  43.95 
 
 
595 aa  496  1e-139  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.13259 
 
 
-
 
NC_010681  Bphyt_0661  acyl-CoA dehydrogenase domain protein  44.56 
 
 
595 aa  494  9.999999999999999e-139  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_25210  acyl-CoA dehydrogenase  48.22 
 
 
591 aa  493  9.999999999999999e-139  Azotobacter vinelandii DJ  Bacteria  normal  0.885326  n/a   
 
 
-
 
NC_012791  Vapar_4406  acyl-CoA dehydrogenase domain protein  48.79 
 
 
589 aa  493  9.999999999999999e-139  Variovorax paradoxus S110  Bacteria  normal  0.277319  n/a   
 
 
-
 
NC_007948  Bpro_3118  acyl-CoA dehydrogenase-like  51.92 
 
 
575 aa  494  9.999999999999999e-139  Polaromonas sp. JS666  Bacteria  normal  0.042843  normal  0.221606 
 
 
-
 
NC_007347  Reut_A0446  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  45.04 
 
 
595 aa  490  1e-137  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0007  acyl-CoA dehydrogenase domain-containing protein  46.24 
 
 
596 aa  481  1e-134  Acidiphilium cryptum JF-5  Bacteria  normal  0.419421  n/a   
 
 
-
 
NC_007643  Rru_A1308  Acyl-CoA dehydrogenase  46.19 
 
 
596 aa  477  1e-133  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.135322  n/a   
 
 
-
 
NC_011666  Msil_1741  acyl-CoA dehydrogenase domain protein  46.47 
 
 
594 aa  474  1e-132  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008752  Aave_4089  acyl-CoA dehydrogenase domain-containing protein  42.93 
 
 
601 aa  469  1.0000000000000001e-131  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0592  acyl-CoA dehydrogenase domain-containing protein  43.97 
 
 
598 aa  469  1.0000000000000001e-131  Acidovorax sp. JS42  Bacteria  normal  normal  0.559108 
 
 
-
 
NC_009512  Pput_3693  acyl-CoA dehydrogenase domain-containing protein  48.6 
 
 
591 aa  471  1.0000000000000001e-131  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4032  acyl-CoA dehydrogenase domain-containing protein  45.21 
 
 
596 aa  468  9.999999999999999e-131  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000200788 
 
 
-
 
NC_008825  Mpe_A0419  putative acyl-CoA dehydrogenase oxidoreductase protein  44.86 
 
 
596 aa  468  9.999999999999999e-131  Methylibium petroleiphilum PM1  Bacteria  normal  0.232992  normal 
 
 
-
 
NC_012560  Avin_45920  acyl-CoA dehydrogenase  46.57 
 
 
601 aa  466  9.999999999999999e-131  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0609  putative acyl-CoA dehydrogenase  43.58 
 
 
592 aa  465  9.999999999999999e-131  Pseudomonas aeruginosa PA7  Bacteria  normal  0.666513  n/a   
 
 
-
 
NC_002947  PP_2048  acyl-CoA dehydrogenase, putative  48.25 
 
 
616 aa  464  1e-129  Pseudomonas putida KT2440  Bacteria  normal  0.681425  normal 
 
 
-
 
NC_009512  Pput_0396  acyl-CoA dehydrogenase domain-containing protein  43.24 
 
 
592 aa  462  1e-129  Pseudomonas putida F1  Bacteria  normal  0.352257  normal 
 
 
-
 
NC_012791  Vapar_0810  acyl-CoA dehydrogenase domain protein  43.89 
 
 
598 aa  462  1e-129  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_09630  putative acyl-CoA dehydrogenase  43.76 
 
 
593 aa  465  1e-129  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.806665  normal 
 
 
-
 
NC_009720  Xaut_4445  acyl-CoA dehydrogenase domain-containing protein  46.35 
 
 
626 aa  465  1e-129  Xanthobacter autotrophicus Py2  Bacteria  normal  0.744679  normal  0.0140421 
 
 
-
 
NC_010002  Daci_1337  acyl-CoA dehydrogenase domain-containing protein  43.35 
 
 
601 aa  463  1e-129  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1754  acyl-CoA dehydrogenase domain-containing protein  45.7 
 
 
594 aa  464  1e-129  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0420795 
 
 
-
 
NC_010581  Bind_3270  acyl-CoA dehydrogenase domain-containing protein  45.39 
 
 
589 aa  463  1e-129  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.928041  normal 
 
 
-
 
NC_008463  PA14_06640  putative acyl-CoA dehydrogenase  43.24 
 
 
592 aa  462  9.999999999999999e-129  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0571  acyl-CoA dehydrogenase domain protein  43.45 
 
 
598 aa  461  9.999999999999999e-129  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4832  acyl-CoA dehydrogenase domain-containing protein  42.91 
 
 
592 aa  459  9.999999999999999e-129  Pseudomonas putida W619  Bacteria  normal  normal  0.946881 
 
 
-
 
NC_002947  PP_0368  acyl-CoA dehydrogenase domain-containing protein  43.58 
 
 
601 aa  456  1e-127  Pseudomonas putida KT2440  Bacteria  normal  0.335716  normal 
 
 
-
 
NC_002947  PP_0370  acyl-CoA dehydrogenase domain-containing protein  43.07 
 
 
592 aa  458  1e-127  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2768  acyl-CoA dehydrogenase family protein  44.83 
 
 
596 aa  456  1e-127  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_0500  acyl-CoA dehydrogenase family protein  43.27 
 
 
601 aa  455  1e-127  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.837085  n/a   
 
 
-
 
NC_007005  Psyr_4681  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  43.75 
 
 
601 aa  457  1e-127  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0398  acyl-CoA dehydrogenase domain-containing protein  43.58 
 
 
601 aa  456  1e-127  Pseudomonas putida GB-1  Bacteria  normal  0.257074  normal 
 
 
-
 
NC_010322  PputGB1_0400  acyl-CoA dehydrogenase domain-containing protein  43.41 
 
 
592 aa  458  1e-127  Pseudomonas putida GB-1  Bacteria  normal  normal  0.672876 
 
 
-
 
NC_007492  Pfl01_5167  Acyl-CoA dehydrogenase-like  43.73 
 
 
598 aa  457  1e-127  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0783661 
 
 
-
 
NC_009439  Pmen_3819  acyl-CoA dehydrogenase domain-containing protein  44.54 
 
 
590 aa  458  1e-127  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2665  acyl-CoA dehydrogenase domain-containing protein  45.03 
 
 
592 aa  456  1e-127  Pseudomonas putida F1  Bacteria  normal  0.755851  normal 
 
 
-
 
NC_009512  Pput_0394  acyl-CoA dehydrogenase domain-containing protein  43.58 
 
 
601 aa  456  1e-127  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3797  acyl-CoA dehydrogenase domain-containing protein  43.8 
 
 
596 aa  458  1e-127  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.163707 
 
 
-
 
NC_008577  Shewana3_2552  acyl-CoA dehydrogenase domain-containing protein  44.83 
 
 
596 aa  452  1.0000000000000001e-126  Shewanella sp. ANA-3  Bacteria  normal  0.0690519  normal 
 
 
-
 
NC_009656  PSPA7_0899  putative acyl-CoA dehydrogenase  43.76 
 
 
593 aa  452  1.0000000000000001e-126  Pseudomonas aeruginosa PA7  Bacteria  normal  0.183433  n/a   
 
 
-
 
NC_007492  Pfl01_5166  Acyl-CoA dehydrogenase-like  41.78 
 
 
592 aa  453  1.0000000000000001e-126  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.164353 
 
 
-
 
NC_010717  PXO_01173  acyl-CoA dehydrogenase  44.05 
 
 
597 aa  454  1.0000000000000001e-126  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.520854  n/a   
 
 
-
 
NC_010322  PputGB1_2368  acyl-CoA dehydrogenase domain-containing protein  44.85 
 
 
589 aa  454  1.0000000000000001e-126  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0515  acyl-CoA dehydrogenase domain-containing protein  44.87 
 
 
591 aa  455  1.0000000000000001e-126  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3569  acyl-CoA dehydrogenase domain protein  44.31 
 
 
596 aa  452  1.0000000000000001e-126  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.452125 
 
 
-
 
NC_007912  Sde_3132  acyl-CoA dehydrogenase family protein  43.05 
 
 
589 aa  455  1.0000000000000001e-126  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3957  acyl-CoA dehydrogenase-like  42.43 
 
 
598 aa  452  1.0000000000000001e-126  Polaromonas sp. JS666  Bacteria  normal  0.574903  normal 
 
 
-
 
NC_010531  Pnec_0962  acyl-CoA dehydrogenase domain protein  42.18 
 
 
595 aa  454  1.0000000000000001e-126  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2459  acyl-CoA dehydrogenase domain-containing protein  44.83 
 
 
596 aa  452  1.0000000000000001e-126  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00932419 
 
 
-
 
NC_008740  Maqu_2749  acyl-CoA dehydrogenase domain-containing protein  43.33 
 
 
596 aa  455  1.0000000000000001e-126  Marinobacter aquaeolei VT8  Bacteria  normal  0.59666  n/a   
 
 
-
 
NC_007005  Psyr_4677  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  40.91 
 
 
592 aa  449  1e-125  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0983724  normal 
 
 
-
 
NC_010172  Mext_3245  acyl-CoA dehydrogenase domain-containing protein  44.31 
 
 
596 aa  451  1e-125  Methylobacterium extorquens PA1  Bacteria  normal  0.532993  normal  0.0328142 
 
 
-
 
NC_009656  PSPA7_0606  putative acyl-CoA dehydrogenase  42.88 
 
 
601 aa  451  1e-125  Pseudomonas aeruginosa PA7  Bacteria  normal  0.941769  n/a   
 
 
-
 
NC_007336  Reut_C6066  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  44.59 
 
 
598 aa  449  1e-125  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5170  Acyl-CoA dehydrogenase-like  43.07 
 
 
601 aa  449  1e-125  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.131109  normal  0.317042 
 
 
-
 
NC_008463  PA14_06600  putative acyl-CoA dehydrogenase  42.88 
 
 
601 aa  451  1e-125  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0462  acyl-CoA dehydrogenase domain-containing protein  42.93 
 
 
597 aa  451  1e-125  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.29438  normal 
 
 
-
 
NC_008786  Veis_1224  acyl-CoA dehydrogenase domain-containing protein  44.7 
 
 
598 aa  451  1e-125  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2750  acyl-CoA dehydrogenase domain-containing protein  42.18 
 
 
599 aa  449  1e-125  Marinobacter aquaeolei VT8  Bacteria  unclonable  0.000084613  n/a   
 
 
-
 
NC_007963  Csal_2431  acyl-CoA dehydrogenase-like protein  43.74 
 
 
603 aa  449  1e-125  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5758  acyl-CoA dehydrogenase domain-containing protein  43.62 
 
 
595 aa  451  1e-125  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0105  acyl-CoA dehydrogenase-like protein  45.18 
 
 
612 aa  451  1e-125  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0607  putative acyl-CoA dehydrogenase  44.85 
 
 
598 aa  452  1e-125  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4834  acyl-CoA dehydrogenase domain-containing protein  43.24 
 
 
601 aa  451  1e-125  Pseudomonas putida W619  Bacteria  normal  normal  0.649579 
 
 
-
 
NC_002947  PP_3554  acyl-CoA dehydrogenase domain-containing protein  45.44 
 
 
589 aa  447  1.0000000000000001e-124  Pseudomonas putida KT2440  Bacteria  normal  0.244117  normal 
 
 
-
 
NC_009512  Pput_2220  acyl-CoA dehydrogenase domain-containing protein  44.33 
 
 
594 aa  448  1.0000000000000001e-124  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4079  acyl-CoA dehydrogenase domain-containing protein  41.39 
 
 
592 aa  446  1.0000000000000001e-124  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2808  acyl-CoA dehydrogenase domain-containing protein  45.09 
 
 
592 aa  448  1.0000000000000001e-124  Pseudomonas putida GB-1  Bacteria  normal  0.566358  normal 
 
 
-
 
NC_011071  Smal_2777  acyl-CoA dehydrogenase domain protein  44.77 
 
 
596 aa  447  1.0000000000000001e-124  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.932954  normal 
 
 
-
 
NC_008463  PA14_06620  putative acyl-CoA dehydrogenase  44.85 
 
 
598 aa  447  1.0000000000000001e-124  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2387  acyl-CoA dehydrogenase domain-containing protein  44.48 
 
 
596 aa  447  1.0000000000000001e-124  Shewanella sp. MR-4  Bacteria  normal  0.109961  normal 
 
 
-
 
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