42 homologs were found in PanDaTox collection
for query gene PP_2816 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2816  transcriptional regulator NfxB, putative  100 
 
 
188 aa  380  1e-105  Pseudomonas putida KT2440  Bacteria  normal  0.308594  normal 
 
 
-
 
NC_007492  Pfl01_2759  LacI family transcription regulator  52.33 
 
 
198 aa  156  2e-37  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_60860  transcriptional regulator NfxB  47.4 
 
 
187 aa  142  3e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5241  transcriptional regulator NfxB  43.92 
 
 
199 aa  141  4e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2755  LacI family transcription regulator  43.75 
 
 
187 aa  142  4e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0367179  normal 
 
 
-
 
NC_008463  PA14_60810  putative transcriptional regulator NfxB  48.15 
 
 
172 aa  133  9.999999999999999e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2820  transcriptional regulator NfxB  43.43 
 
 
185 aa  130  1.0000000000000001e-29  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2430  regulatory protein LacI  41.53 
 
 
185 aa  130  1.0000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  0.633892  normal 
 
 
-
 
NC_009656  PSPA7_5237  transcriptional regulator NfxB  43.82 
 
 
206 aa  120  9.999999999999999e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2284  transcriptional regulatory protein NfxB  42.16 
 
 
196 aa  118  3.9999999999999996e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.000917221 
 
 
-
 
NC_004578  PSPTO_2594  transcriptional regulatory protein NfxB  42.2 
 
 
184 aa  110  2.0000000000000002e-23  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5859  transcriptional regulatory protein NfxB  40.76 
 
 
188 aa  102  3e-21  Delftia acidovorans SPH-1  Bacteria  normal  0.731668  normal 
 
 
-
 
NC_009654  Mmwyl1_0287  TetR family transcriptional regulator  33.92 
 
 
181 aa  98.6  4e-20  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0665  TetR family transcriptional regulator  35.67 
 
 
179 aa  73.6  0.000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.950622  normal  0.396489 
 
 
-
 
NC_011071  Smal_1734  transcriptional regulator NfxB  30.48 
 
 
188 aa  68.6  0.00000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.413986 
 
 
-
 
NC_013739  Cwoe_1275  transcriptional regulator, TetR family  31.82 
 
 
193 aa  67.4  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.0714777  normal  0.0115307 
 
 
-
 
NC_010717  PXO_00232  hypothetical protein  28.98 
 
 
192 aa  65.1  0.0000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0473  TetR family transcriptional regulator  32.92 
 
 
186 aa  60.1  0.00000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_0495  TetR family transcriptional regulator  32.92 
 
 
186 aa  60.1  0.00000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.595524 
 
 
-
 
NC_008146  Mmcs_0484  TetR family transcriptional regulator  32.92 
 
 
186 aa  60.1  0.00000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0240  TetR family transcriptional regulator  33.33 
 
 
180 aa  58.2  0.00000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.477242  normal 
 
 
-
 
NC_013521  Sked_14890  transcriptional regulator, tetR family  33.09 
 
 
204 aa  53.5  0.000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0325223  normal  0.0343336 
 
 
-
 
NC_013131  Caci_8493  transcriptional regulator, TetR family  29.7 
 
 
180 aa  53.1  0.000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.996543 
 
 
-
 
NC_008704  Mkms_5998  TetR family transcriptional regulator  27.67 
 
 
189 aa  48.5  0.00005  Mycobacterium sp. KMS  Bacteria  normal  hitchhiker  0.00000044097 
 
 
-
 
NC_008147  Mmcs_5597  TetR family transcriptional regulator  27.67 
 
 
189 aa  48.5  0.00005  Mycobacterium sp. MCS  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0755  putative transcriptional regulator, TetR family  30.11 
 
 
210 aa  48.1  0.00008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0209  transcriptional regulator, TetR family  28.5 
 
 
195 aa  46.6  0.0002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.234614  normal  0.228688 
 
 
-
 
NC_012669  Bcav_0928  transcriptional regulator, TetR family  28.92 
 
 
184 aa  43.9  0.001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.312785  normal 
 
 
-
 
NC_011772  BCG9842_B3457  transcriptional regulator, TetR family  26.46 
 
 
194 aa  43.9  0.001  Bacillus cereus G9842  Bacteria  normal  0.53987  hitchhiker  4.55485e-18 
 
 
-
 
NC_011725  BCB4264_A1889  transcriptional regulator, TetR family  26.46 
 
 
194 aa  43.9  0.001  Bacillus cereus B4264  Bacteria  normal  0.2019  n/a   
 
 
-
 
NC_013595  Sros_7768  putative transcriptional regulator, TetR family  26.87 
 
 
194 aa  44.3  0.001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2922  transcriptional regulator, TetR family  25.45 
 
 
204 aa  43.5  0.002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.404278 
 
 
-
 
NC_014165  Tbis_2696  TetR family transcriptional regulator  24.63 
 
 
196 aa  42.7  0.003  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.834085 
 
 
-
 
NC_013595  Sros_6310  putative transcriptional regulator, TetR family  28.07 
 
 
185 aa  42.4  0.004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.523655  normal  0.0800729 
 
 
-
 
NC_013743  Htur_1896  transcriptional regulator, TetR family  27.04 
 
 
204 aa  42.4  0.004  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013595  Sros_2000  transcriptional regulator, TetR family  26.51 
 
 
201 aa  42  0.005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.669557 
 
 
-
 
NC_013595  Sros_6422  putative transcriptional regulator, TetR family  28.37 
 
 
216 aa  42  0.005  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00790445 
 
 
-
 
NC_013947  Snas_2402  transcriptional regulator, TetR family  24.43 
 
 
259 aa  42  0.005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0404395  hitchhiker  0.00830545 
 
 
-
 
NC_008340  Mlg_1059  TetR family transcriptional regulator  27.33 
 
 
212 aa  42  0.006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.659814 
 
 
-
 
NC_013595  Sros_4085  putative transcriptional regulator, TetR family  27.39 
 
 
232 aa  41.2  0.009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.750305  normal 
 
 
-
 
NC_013947  Snas_2768  transcriptional regulator, TetR family  28.67 
 
 
192 aa  41.2  0.009  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.373276  normal 
 
 
-
 
NC_013093  Amir_1603  transcriptional regulator, TetR family  24.07 
 
 
189 aa  41.2  0.01  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0115969  n/a   
 
 
-
 
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