41 homologs were found in PanDaTox collection
for query gene Dret_2363 on replicon NC_013223
Organism: Desulfohalobium retbaense DSM 5692



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013223  Dret_2363  transcriptional regulator, XRE family  100 
 
 
117 aa  241  1.9999999999999999e-63  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013224  Dret_2503  transcriptional regulator, XRE family  92.31 
 
 
117 aa  223  5.0000000000000005e-58  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1891  transcriptional regulator, XRE family  74.36 
 
 
117 aa  186  1e-46  Desulfohalobium retbaense DSM 5692  Bacteria  decreased coverage  0.00988673  normal  0.0163804 
 
 
-
 
NC_013173  Dbac_2140  transcriptional regulator, XRE family  44.54 
 
 
120 aa  97.1  7e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1133  XRE family plasmid maintenance system antidote protein  46.15 
 
 
114 aa  90.9  5e-18  Geobacter lovleyi SZ  Bacteria  normal  0.96581  n/a   
 
 
-
 
NC_008609  Ppro_2134  XRE family plasmid maintenance system antidote protein  41.35 
 
 
114 aa  80.5  0.000000000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0677285  n/a   
 
 
-
 
NC_008609  Ppro_3124  XRE family transcriptional regulator  53.42 
 
 
76 aa  76.3  0.0000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1114  XRE family plasmid maintenance system antidote protein  55.07 
 
 
120 aa  76.3  0.0000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3435  XRE family transcriptional regulator  37.5 
 
 
116 aa  65.5  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  normal  0.0322036  n/a   
 
 
-
 
NC_007484  Noc_0384  hypothetical protein  53.45 
 
 
126 aa  54.3  0.0000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2570  transcriptional regulator, XRE family  38.1 
 
 
116 aa  53.1  0.000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1165  toxin-antitoxin system, antitoxin component, Xre family  40.85 
 
 
94 aa  50.8  0.000006  Gardnerella vaginalis 409-05  Bacteria  n/a    decreased coverage  0.00000000604987 
 
 
-
 
NC_008752  Aave_1686  putative phage repressor  62.86 
 
 
220 aa  46.2  0.0002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.26222 
 
 
-
 
NC_011138  MADE_04053  Transcriptional Regulator, XRE family protein  45.1 
 
 
106 aa  45.4  0.0002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0549  transcriptional regulator, XRE family  45.1 
 
 
103 aa  45.8  0.0002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0085  putative transcriptional regulator, XRE family  37.93 
 
 
241 aa  44.7  0.0004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0736  transcriptional regulator, XRE family  31.88 
 
 
288 aa  43.5  0.001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.831466 
 
 
-
 
NC_007643  Rru_A3411  XRE family transcriptional regulator  38.71 
 
 
97 aa  43.1  0.001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2962  hypothetical protein  31.75 
 
 
476 aa  42.4  0.002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0436229  normal 
 
 
-
 
NC_010623  Bphy_5469  XRE family transcriptional regulator  42.31 
 
 
215 aa  42.4  0.002  Burkholderia phymatum STM815  Bacteria  normal  0.0381278  normal  0.011752 
 
 
-
 
NC_002967  TDE1305  DNA-binding protein  37.25 
 
 
72 aa  42.4  0.002  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_3015  putative prophage repressor  39.29 
 
 
227 aa  42.4  0.002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0062  transcriptional regulator  37.14 
 
 
211 aa  42  0.003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4798  transcriptional regulator  43.14 
 
 
222 aa  42  0.003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.124269  normal 
 
 
-
 
NC_012854  Rleg_6350  transcriptional regulator, XRE family  37.93 
 
 
283 aa  41.6  0.003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8678  transcriptional regulator, XRE family  38.98 
 
 
288 aa  41.2  0.004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.947693  normal 
 
 
-
 
NC_009975  MmarC6_1226  XRE family transcriptional regulator  43.9 
 
 
212 aa  41.2  0.004  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_010501  PputW619_3964  putative phage repressor  54.29 
 
 
259 aa  41.2  0.005  Pseudomonas putida W619  Bacteria  normal  0.072898  normal 
 
 
-
 
NC_009715  CCV52592_2042  putative cytochrome c  41.51 
 
 
90 aa  41.2  0.005  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1361  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)  30.3 
 
 
516 aa  41.2  0.005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.419571  normal  0.53858 
 
 
-
 
NC_009637  MmarC7_0692  XRE family transcriptional regulator  43.9 
 
 
218 aa  41.2  0.005  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009511  Swit_4610  XRE family transcriptional regulator  45.1 
 
 
252 aa  41.2  0.005  Sphingomonas wittichii RW1  Bacteria  normal  0.985679  normal 
 
 
-
 
NC_009135  MmarC5_0131  XRE family transcriptional regulator  43.9 
 
 
218 aa  41.2  0.005  Methanococcus maripaludis C5  Archaea  normal  0.169212  n/a   
 
 
-
 
NC_012803  Mlut_02070  predicted transcriptional regulator  42 
 
 
488 aa  40.8  0.006  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_7796  putative transcriptional regulator, XRE family  40.74 
 
 
271 aa  40.8  0.006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2561  XRE family transcriptional regulator  43.75 
 
 
86 aa  40.8  0.007  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.333504  normal  0.0163697 
 
 
-
 
NC_007760  Adeh_3526  XRE family transcriptional regulator  38.6 
 
 
265 aa  40.8  0.007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.565274  n/a   
 
 
-
 
NC_007511  Bcep18194_B2562  XRE family transcriptional regulator  36.21 
 
 
281 aa  40.8  0.007  Burkholderia sp. 383  Bacteria  normal  normal  0.964133 
 
 
-
 
NC_012791  Vapar_1559  transcriptional regulator, XRE family  33.9 
 
 
262 aa  40.4  0.008  Variovorax paradoxus S110  Bacteria  normal  0.682713  n/a   
 
 
-
 
NC_010831  Cphamn1_0557  transcriptional regulator, XRE family  32.84 
 
 
89 aa  40.4  0.008  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.863729 
 
 
-
 
NC_013739  Cwoe_5585  transcriptional regulator, XRE family  36.21 
 
 
284 aa  40.4  0.008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
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