174 homologs were found in PanDaTox collection
for query gene Rleg_5843 on replicon NC_012853
Organism: Rhizobium leguminosarum bv. trifolii WSM1325



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012853  Rleg_5843  putative transcriptional regulator, Crp/Fnr family  100 
 
 
254 aa  519  1e-146  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.918646  normal 
 
 
-
 
NC_011894  Mnod_3012  cyclic nucleotide-binding protein  48.51 
 
 
242 aa  212  5.999999999999999e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.791421  n/a   
 
 
-
 
NC_010505  Mrad2831_2421  Crp/FNR family transcriptional regulator  51.75 
 
 
239 aa  206  3e-52  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.269594  normal 
 
 
-
 
NC_011757  Mchl_3374  transcriptional regulator, Crp/Fnr family  51.43 
 
 
256 aa  206  4e-52  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0788  cyclic nucleotide-binding  48.89 
 
 
236 aa  202  5e-51  Methylobacterium extorquens PA1  Bacteria  normal  0.417677  normal 
 
 
-
 
NC_012858  Rleg_7015  putative transcriptional regulator, Crp/Fnr family  50.22 
 
 
241 aa  197  1.0000000000000001e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0954558  normal 
 
 
-
 
NC_011757  Mchl_3376  cyclic nucleotide-binding protein  49.11 
 
 
236 aa  197  1.0000000000000001e-49  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0789  cyclic nucleotide-binding  47.77 
 
 
240 aa  196  3e-49  Methylobacterium extorquens PA1  Bacteria  normal  0.424436  normal 
 
 
-
 
NC_012853  Rleg_5764  putative transcriptional regulator, Crp/Fnr family  47.26 
 
 
237 aa  194  1e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6918  putative transcriptional regulator, Crp/Fnr family  46.49 
 
 
255 aa  192  4e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5879  putative transcriptional regulator, Crp/Fnr family  49.53 
 
 
255 aa  191  1e-47  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.450162  normal 
 
 
-
 
NC_012853  Rleg_5837  putative transcriptional regulator, Crp/Fnr family  49.06 
 
 
255 aa  189  2.9999999999999997e-47  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.561164  normal 
 
 
-
 
NC_012848  Rleg_4765  putative transcriptional regulator, Crp/Fnr family  44.1 
 
 
244 aa  189  2.9999999999999997e-47  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.156733  normal  0.417355 
 
 
-
 
NC_012853  Rleg_5598  putative transcriptional regulator, Crp/Fnr family  46.22 
 
 
239 aa  187  2e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  decreased coverage  0.00118165 
 
 
-
 
NC_012858  Rleg_6894  putative transcriptional regulator, Crp/Fnr family  45.41 
 
 
241 aa  185  7e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.744269 
 
 
-
 
NC_012850  Rleg_0741  putative transcriptional regulator, Crp/Fnr family  44.98 
 
 
241 aa  184  1.0000000000000001e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0075  hypothetical protein  47.56 
 
 
237 aa  182  6e-45  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0061  cyclic nucleotide-binding protein  47.11 
 
 
237 aa  179  2.9999999999999997e-44  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5885  putative transcriptional regulator, Crp/Fnr family  49.74 
 
 
219 aa  180  2.9999999999999997e-44  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3386  cyclic nucleotide-binding protein  47.11 
 
 
237 aa  179  2.9999999999999997e-44  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0784  hypothetical protein  46.67 
 
 
237 aa  179  2.9999999999999997e-44  Methylobacterium extorquens PA1  Bacteria  normal  0.195176  normal 
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  41.3 
 
 
384 aa  179  4.999999999999999e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_010725  Mpop_2074  putative transcriptional regulator, Crp/Fnr family  45.61 
 
 
246 aa  177  1e-43  Methylobacterium populi BJ001  Bacteria  normal  0.83722  normal 
 
 
-
 
NC_012853  Rleg_5762  putative transcriptional regulator, Crp/Fnr family  45.13 
 
 
241 aa  174  9e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2397  cyclic nucleotide-binding protein  44.3 
 
 
243 aa  174  9.999999999999999e-43  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2120  cyclic nucleotide-binding  44.3 
 
 
243 aa  174  9.999999999999999e-43  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0341739 
 
 
-
 
NC_012853  Rleg_5568  putative transcriptional regulator, Crp/Fnr family  43.56 
 
 
239 aa  172  5e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.192457  normal  0.0307688 
 
 
-
 
NC_009668  Oant_4306  CRP/FNR family transcriptional regulator  41.78 
 
 
236 aa  170  2e-41  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1834  cyclic nucleotide-binding protein  43.11 
 
 
241 aa  166  4e-40  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6128  putative transcriptional regulator, Crp/Fnr family  44.02 
 
 
236 aa  164  1.0000000000000001e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5594  hypothetical protein  42.92 
 
 
238 aa  164  1.0000000000000001e-39  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2533  cyclic nucleotide-binding domain-containing protein  40.09 
 
 
245 aa  161  1e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.23322 
 
 
-
 
NC_009668  Oant_4307  cyclic nucleotide-binding protein  39.11 
 
 
243 aa  161  1e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3860  cyclic nucleotide-binding protein  45.78 
 
 
237 aa  156  3e-37  Methylobacterium populi BJ001  Bacteria  normal  normal  0.123136 
 
 
-
 
NC_010681  Bphyt_0905  transcriptional regulator, Crp/Fnr family  39.38 
 
 
243 aa  150  2e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3549  cyclic nucleotide-binding domain-containing protein  40.28 
 
 
239 aa  149  5e-35  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1519  Crp/FNR family transcriptional regulator  39.73 
 
 
239 aa  146  3e-34  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1669  Crp/FNR family transcriptional regulator  37.95 
 
 
244 aa  146  3e-34  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0359086 
 
 
-
 
NC_011726  PCC8801_4275  cyclic nucleotide-binding protein  35.71 
 
 
246 aa  146  4.0000000000000006e-34  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4335  putative transcriptional regulator, Crp/Fnr family  35.71 
 
 
246 aa  146  4.0000000000000006e-34  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.157616 
 
 
-
 
NC_008340  Mlg_1115  Crp/FNR family transcriptional regulator  37.77 
 
 
250 aa  145  8.000000000000001e-34  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.804671  normal  0.524469 
 
 
-
 
NC_010681  Bphyt_1714  transcriptional regulator, Crp/Fnr family  37.95 
 
 
244 aa  145  9e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2530  Crp/FNR family transcriptional regulator  37.95 
 
 
244 aa  145  9e-34  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.201087 
 
 
-
 
NC_011894  Mnod_5606  cyclic nucleotide-binding protein  38.16 
 
 
241 aa  144  1e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3898  Crp/FNR family transcriptional regulator  37.99 
 
 
239 aa  143  2e-33  Burkholderia ambifaria MC40-6  Bacteria  normal  0.472058  normal 
 
 
-
 
NC_007953  Bxe_C0542  Crp/FNR family transcriptional regulator  37.61 
 
 
239 aa  143  3e-33  Burkholderia xenovorans LB400  Bacteria  normal  0.936935  normal 
 
 
-
 
NC_010508  Bcenmc03_1684  Crp/FNR family transcriptional regulator  37.55 
 
 
239 aa  142  5e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1693  Crp/FNR family transcriptional regulator  37.55 
 
 
239 aa  142  5e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.3052  normal 
 
 
-
 
NC_008061  Bcen_5290  Crp/FNR family transcriptional regulator  37.55 
 
 
239 aa  142  5e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.420985  n/a   
 
 
-
 
NC_008543  Bcen2424_5568  Crp/FNR family transcriptional regulator  37.55 
 
 
239 aa  142  5e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0397  CRP/FNR family transcriptional regulator  38.86 
 
 
244 aa  142  6e-33  Halorhodospira halophila SL1  Bacteria  normal  0.934312  n/a   
 
 
-
 
NC_009052  Sbal_2723  CRP/FNR family transcriptional regulator  36.77 
 
 
232 aa  142  8e-33  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5104  Crp/FNR family transcriptional regulator  37.77 
 
 
243 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5274  Crp/FNR family transcriptional regulator  37.39 
 
 
239 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5585  Crp/FNR family transcriptional regulator  37.39 
 
 
239 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_008543  Bcen2424_5755  Crp/FNR family transcriptional regulator  37.77 
 
 
243 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.132685 
 
 
-
 
NC_010515  Bcenmc03_4421  Crp/FNR family transcriptional regulator  37.77 
 
 
243 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1182  Crp/FNR family transcriptional regulator  36.24 
 
 
240 aa  140  3e-32  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.939173  n/a   
 
 
-
 
NC_011663  Sbal223_1637  transcriptional regulator, Crp/Fnr family  36.32 
 
 
232 aa  140  3e-32  Shewanella baltica OS223  Bacteria  normal  0.0811489  hitchhiker  0.00000101787 
 
 
-
 
NC_007951  Bxe_A3820  cyclic nucleotide-binding domain-containing protein  38.43 
 
 
239 aa  140  3e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.051999  normal 
 
 
-
 
NC_007953  Bxe_C0520  Crp/FNR family transcriptional regulator  37.95 
 
 
239 aa  139  3e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3729  Crp/FNR family transcriptional regulator  38.5 
 
 
244 aa  139  3.9999999999999997e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1315  CRP/FNR family transcriptional regulator  37.5 
 
 
238 aa  139  3.9999999999999997e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.63413  normal 
 
 
-
 
NC_009665  Shew185_2740  CRP/FNR family transcriptional regulator  35.87 
 
 
232 aa  139  3.9999999999999997e-32  Shewanella baltica OS185  Bacteria  hitchhiker  0.00150781  n/a   
 
 
-
 
NC_013889  TK90_1390  transcriptional regulator, Crp/Fnr family  37.44 
 
 
236 aa  139  4.999999999999999e-32  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5358  Crp/FNR family transcriptional regulator  37.33 
 
 
240 aa  139  4.999999999999999e-32  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2132  Crp/FNR family transcriptional regulator  37.18 
 
 
247 aa  138  7.999999999999999e-32  Pseudomonas putida W619  Bacteria  normal  normal  0.0511998 
 
 
-
 
NC_007298  Daro_2043  cyclic nucleotide-binding  34.51 
 
 
439 aa  137  1e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5838  cyclic nucleotide-binding  36.91 
 
 
242 aa  137  1e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.358125  n/a   
 
 
-
 
NC_007948  Bpro_0177  Crp/FNR family transcriptional regulator  36.24 
 
 
238 aa  137  1e-31  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1833  Crp/FNR family transcriptional regulator  46.19 
 
 
237 aa  136  3.0000000000000003e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5993  transcriptional regulator, Crp/Fnr family  39.32 
 
 
246 aa  135  4e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6495  Crp/FNR family transcriptional regulator  36.61 
 
 
267 aa  135  9e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.956501  normal 
 
 
-
 
NC_010551  BamMC406_1130  Crp/FNR family transcriptional regulator  36.61 
 
 
267 aa  134  9.999999999999999e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.440884 
 
 
-
 
NC_008781  Pnap_1316  cyclic nucleotide-binding domain-containing protein  37.17 
 
 
247 aa  133  3e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.327041  normal 
 
 
-
 
NC_007908  Rfer_1647  CRP/FNR family transcriptional regulator  35.37 
 
 
263 aa  132  3.9999999999999996e-30  Rhodoferax ferrireducens T118  Bacteria  normal  0.362036  n/a   
 
 
-
 
NC_007974  Rmet_5841  Crp/Fnr family transcriptional regulator  35.71 
 
 
242 aa  131  9e-30  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1786  cyclic nucleotide-binding protein  36.44 
 
 
255 aa  131  1.0000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  0.150342  n/a   
 
 
-
 
NC_004347  SO_2551  transcriptional regulator-related protein  36.16 
 
 
255 aa  130  2.0000000000000002e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_1631  CRP/FNR family transcriptional regulator  35.09 
 
 
248 aa  130  2.0000000000000002e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3742  cyclic nucleotide-binding protein  35.96 
 
 
236 aa  130  3e-29  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_2486  cyclic nucleotide-binding domain-containing protein  35.11 
 
 
266 aa  130  3e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.215074  normal 
 
 
-
 
NC_008781  Pnap_3627  CRP/FNR family transcriptional regulator  36.16 
 
 
245 aa  130  3e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.460124 
 
 
-
 
NC_008781  Pnap_3626  CRP/FNR family transcriptional regulator  35.84 
 
 
239 aa  129  6e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.468145 
 
 
-
 
NC_010511  M446_5720  Crp/FNR family transcriptional regulator  33.63 
 
 
267 aa  129  6e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  hitchhiker  0.00164993 
 
 
-
 
NC_009438  Sputcn32_1787  CRP/FNR family transcriptional regulator  36.4 
 
 
232 aa  128  1.0000000000000001e-28  Shewanella putrefaciens CN-32  Bacteria  normal  0.22283  n/a   
 
 
-
 
NC_007958  RPD_2958  cyclic nucleotide-binding  35.29 
 
 
248 aa  126  3e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.369311  normal 
 
 
-
 
NC_004347  SO_2550  transcriptional regulator-related protein  35.53 
 
 
230 aa  124  1e-27  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007651  BTH_I0534  hypothetical protein  31.47 
 
 
344 aa  124  1e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0876  transcriptional regulator-related protein  34.07 
 
 
258 aa  124  2e-27  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1963  CRP/FNR family transcriptional regulator  35.71 
 
 
246 aa  122  4e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.555453  normal 
 
 
-
 
NC_011884  Cyan7425_4411  cyclic nucleotide-binding protein  35.78 
 
 
238 aa  121  9e-27  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.76047 
 
 
-
 
NC_007434  BURPS1710b_0821  hypothetical protein  31.08 
 
 
312 aa  121  9.999999999999999e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3464  putative transcriptional regulator, Crp/Fnr family  33.48 
 
 
257 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0401211  n/a   
 
 
-
 
NC_011894  Mnod_0413  transcriptional regulator, Crp/Fnr family  31.2 
 
 
240 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.37826  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2891  hypothetical protein  33.04 
 
 
269 aa  120  1.9999999999999998e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2260  transcriptional regulator, Crp/Fnr family  33.78 
 
 
254 aa  120  1.9999999999999998e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3818  transcriptional regulator, Crp/Fnr family  34.55 
 
 
265 aa  120  3e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.827272  n/a   
 
 
-
 
NC_009074  BURPS668_0645  hypothetical protein  33.04 
 
 
269 aa  120  3e-26  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0659  hypothetical protein  33.04 
 
 
269 aa  120  3e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
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