174 homologs were found in PanDaTox collection
for query gene Rleg_5598 on replicon NC_012853
Organism: Rhizobium leguminosarum bv. trifolii WSM1325



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012853  Rleg_5598  putative transcriptional regulator, Crp/Fnr family  100 
 
 
239 aa  484  1e-136  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  decreased coverage  0.00118165 
 
 
-
 
NC_012858  Rleg_6894  putative transcriptional regulator, Crp/Fnr family  94.61 
 
 
241 aa  457  9.999999999999999e-129  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.744269 
 
 
-
 
NC_012850  Rleg_0741  putative transcriptional regulator, Crp/Fnr family  94.61 
 
 
241 aa  458  9.999999999999999e-129  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4765  putative transcriptional regulator, Crp/Fnr family  66.52 
 
 
244 aa  327  9e-89  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.156733  normal  0.417355 
 
 
-
 
NC_012853  Rleg_5762  putative transcriptional regulator, Crp/Fnr family  61.8 
 
 
241 aa  295  3e-79  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5764  putative transcriptional regulator, Crp/Fnr family  61.23 
 
 
237 aa  292  3e-78  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6918  putative transcriptional regulator, Crp/Fnr family  62.45 
 
 
255 aa  291  6e-78  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_7015  putative transcriptional regulator, Crp/Fnr family  59.66 
 
 
241 aa  286  2e-76  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0954558  normal 
 
 
-
 
NC_012853  Rleg_5879  putative transcriptional regulator, Crp/Fnr family  61.4 
 
 
255 aa  273  1.0000000000000001e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.450162  normal 
 
 
-
 
NC_012853  Rleg_5837  putative transcriptional regulator, Crp/Fnr family  59.53 
 
 
255 aa  265  2.9999999999999995e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.561164  normal 
 
 
-
 
NC_012853  Rleg_5885  putative transcriptional regulator, Crp/Fnr family  67.2 
 
 
219 aa  260  1e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0788  cyclic nucleotide-binding  45.69 
 
 
236 aa  206  3e-52  Methylobacterium extorquens PA1  Bacteria  normal  0.417677  normal 
 
 
-
 
NC_010505  Mrad2831_2421  Crp/FNR family transcriptional regulator  45.06 
 
 
239 aa  197  9e-50  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.269594  normal 
 
 
-
 
NC_011757  Mchl_3376  cyclic nucleotide-binding protein  42.42 
 
 
236 aa  191  1e-47  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3012  cyclic nucleotide-binding protein  43.11 
 
 
242 aa  189  2.9999999999999997e-47  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.791421  n/a   
 
 
-
 
NC_012853  Rleg_5843  putative transcriptional regulator, Crp/Fnr family  46.22 
 
 
254 aa  187  2e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.918646  normal 
 
 
-
 
NC_010172  Mext_0789  cyclic nucleotide-binding  41.99 
 
 
240 aa  186  2e-46  Methylobacterium extorquens PA1  Bacteria  normal  0.424436  normal 
 
 
-
 
NC_012853  Rleg_5568  putative transcriptional regulator, Crp/Fnr family  41.63 
 
 
239 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.192457  normal  0.0307688 
 
 
-
 
NC_011988  Avi_5594  hypothetical protein  42.24 
 
 
238 aa  174  9.999999999999999e-43  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3374  transcriptional regulator, Crp/Fnr family  42.92 
 
 
256 aa  174  9.999999999999999e-43  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6128  putative transcriptional regulator, Crp/Fnr family  40.87 
 
 
236 aa  171  1e-41  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3860  cyclic nucleotide-binding protein  43.97 
 
 
237 aa  171  1e-41  Methylobacterium populi BJ001  Bacteria  normal  normal  0.123136 
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  40.53 
 
 
384 aa  169  3e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_009668  Oant_4307  cyclic nucleotide-binding protein  39.22 
 
 
243 aa  169  4e-41  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1834  cyclic nucleotide-binding protein  39.83 
 
 
241 aa  168  8e-41  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0061  cyclic nucleotide-binding protein  39.66 
 
 
237 aa  166  2e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3386  cyclic nucleotide-binding protein  39.66 
 
 
237 aa  166  2e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0075  hypothetical protein  38.79 
 
 
237 aa  164  1.0000000000000001e-39  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2397  cyclic nucleotide-binding protein  38.43 
 
 
243 aa  162  3e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2074  putative transcriptional regulator, Crp/Fnr family  39.3 
 
 
246 aa  162  3e-39  Methylobacterium populi BJ001  Bacteria  normal  0.83722  normal 
 
 
-
 
NC_010172  Mext_2120  cyclic nucleotide-binding  38.43 
 
 
243 aa  162  4.0000000000000004e-39  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0341739 
 
 
-
 
NC_009668  Oant_4306  CRP/FNR family transcriptional regulator  36.91 
 
 
236 aa  160  2e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0784  hypothetical protein  38.36 
 
 
237 aa  160  2e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.195176  normal 
 
 
-
 
NC_007925  RPC_2533  cyclic nucleotide-binding domain-containing protein  36.68 
 
 
245 aa  150  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.23322 
 
 
-
 
NC_011894  Mnod_5606  cyclic nucleotide-binding protein  36.52 
 
 
241 aa  147  1.0000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2132  Crp/FNR family transcriptional regulator  36.09 
 
 
247 aa  140  1.9999999999999998e-32  Pseudomonas putida W619  Bacteria  normal  normal  0.0511998 
 
 
-
 
NC_008061  Bcen_5104  Crp/FNR family transcriptional regulator  34.65 
 
 
243 aa  139  3.9999999999999997e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5755  Crp/FNR family transcriptional regulator  34.65 
 
 
243 aa  139  3.9999999999999997e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.132685 
 
 
-
 
NC_010515  Bcenmc03_4421  Crp/FNR family transcriptional regulator  34.65 
 
 
243 aa  139  3.9999999999999997e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0177  Crp/FNR family transcriptional regulator  33.77 
 
 
238 aa  138  7.999999999999999e-32  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4411  cyclic nucleotide-binding protein  34.76 
 
 
238 aa  138  8.999999999999999e-32  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.76047 
 
 
-
 
NC_011726  PCC8801_4275  cyclic nucleotide-binding protein  33.48 
 
 
246 aa  138  8.999999999999999e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4335  putative transcriptional regulator, Crp/Fnr family  33.48 
 
 
246 aa  138  8.999999999999999e-32  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.157616 
 
 
-
 
NC_010511  M446_1833  Crp/FNR family transcriptional regulator  40.74 
 
 
237 aa  137  2e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1316  cyclic nucleotide-binding domain-containing protein  36.4 
 
 
247 aa  135  5e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.327041  normal 
 
 
-
 
NC_008781  Pnap_1315  CRP/FNR family transcriptional regulator  32.76 
 
 
238 aa  135  7.000000000000001e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.63413  normal 
 
 
-
 
NC_010552  BamMC406_3898  Crp/FNR family transcriptional regulator  34.96 
 
 
239 aa  134  9.999999999999999e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.472058  normal 
 
 
-
 
NC_007778  RPB_2486  cyclic nucleotide-binding domain-containing protein  35.27 
 
 
266 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.215074  normal 
 
 
-
 
NC_007953  Bxe_C0542  Crp/FNR family transcriptional regulator  33.19 
 
 
239 aa  134  1.9999999999999998e-30  Burkholderia xenovorans LB400  Bacteria  normal  0.936935  normal 
 
 
-
 
NC_008061  Bcen_5274  Crp/FNR family transcriptional regulator  34.67 
 
 
239 aa  132  3.9999999999999996e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5290  Crp/FNR family transcriptional regulator  34.51 
 
 
239 aa  132  3.9999999999999996e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.420985  n/a   
 
 
-
 
NC_008543  Bcen2424_5568  Crp/FNR family transcriptional regulator  34.51 
 
 
239 aa  132  3.9999999999999996e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5585  Crp/FNR family transcriptional regulator  34.67 
 
 
239 aa  132  3.9999999999999996e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010508  Bcenmc03_1693  Crp/FNR family transcriptional regulator  34.51 
 
 
239 aa  131  7.999999999999999e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.3052  normal 
 
 
-
 
NC_010508  Bcenmc03_1684  Crp/FNR family transcriptional regulator  34.51 
 
 
239 aa  131  7.999999999999999e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3627  CRP/FNR family transcriptional regulator  32.43 
 
 
245 aa  131  9e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.460124 
 
 
-
 
NC_007958  RPD_2958  cyclic nucleotide-binding  33.78 
 
 
248 aa  130  2.0000000000000002e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.369311  normal 
 
 
-
 
NC_011004  Rpal_3464  putative transcriptional regulator, Crp/Fnr family  34.67 
 
 
257 aa  129  3e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0401211  n/a   
 
 
-
 
NC_007951  Bxe_A3820  cyclic nucleotide-binding domain-containing protein  33.48 
 
 
239 aa  129  4.0000000000000003e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.051999  normal 
 
 
-
 
NC_008789  Hhal_0397  CRP/FNR family transcriptional regulator  34.38 
 
 
244 aa  129  4.0000000000000003e-29  Halorhodospira halophila SL1  Bacteria  normal  0.934312  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2891  hypothetical protein  33.19 
 
 
269 aa  128  9.000000000000001e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0045  hypothetical protein  33.19 
 
 
269 aa  127  1.0000000000000001e-28  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2702  cyclic nucleotide-binding protein  30.09 
 
 
230 aa  128  1.0000000000000001e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A2194  hypothetical protein  33.19 
 
 
269 aa  127  1.0000000000000001e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  0.396995  n/a   
 
 
-
 
NC_009074  BURPS668_0645  hypothetical protein  33.19 
 
 
269 aa  127  1.0000000000000001e-28  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0659  hypothetical protein  33.19 
 
 
269 aa  127  1.0000000000000001e-28  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2513  hypothetical protein  33.19 
 
 
269 aa  127  1.0000000000000001e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  0.225416  n/a   
 
 
-
 
NC_007434  BURPS1710b_0821  hypothetical protein  33.19 
 
 
312 aa  127  2.0000000000000002e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1714  transcriptional regulator, Crp/Fnr family  33.48 
 
 
244 aa  127  2.0000000000000002e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2530  Crp/FNR family transcriptional regulator  33.48 
 
 
244 aa  127  2.0000000000000002e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.201087 
 
 
-
 
NC_007614  Nmul_A0876  transcriptional regulator-related protein  32.47 
 
 
258 aa  126  4.0000000000000003e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1631  CRP/FNR family transcriptional regulator  29.57 
 
 
248 aa  126  4.0000000000000003e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1115  Crp/FNR family transcriptional regulator  33.93 
 
 
250 aa  125  6e-28  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.804671  normal  0.524469 
 
 
-
 
NC_010622  Bphy_1669  Crp/FNR family transcriptional regulator  32.59 
 
 
244 aa  125  8.000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0359086 
 
 
-
 
NC_011663  Sbal223_1637  transcriptional regulator, Crp/Fnr family  32.14 
 
 
232 aa  124  1e-27  Shewanella baltica OS223  Bacteria  normal  0.0811489  hitchhiker  0.00000101787 
 
 
-
 
NC_009052  Sbal_2723  CRP/FNR family transcriptional regulator  31.7 
 
 
232 aa  124  1e-27  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2740  CRP/FNR family transcriptional regulator  31.7 
 
 
232 aa  124  1e-27  Shewanella baltica OS185  Bacteria  hitchhiker  0.00150781  n/a   
 
 
-
 
NC_007614  Nmul_A0678  transcriptional regulator-related protein  31.6 
 
 
259 aa  123  2e-27  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4389  CRP/FNR family transcriptional regulator  34.56 
 
 
260 aa  122  4e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0534  hypothetical protein  32.3 
 
 
344 aa  122  5e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3639  CRP/FNR family transcriptional regulator  33.49 
 
 
260 aa  122  6e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4113  CRP/FNR family transcriptional regulator  33.49 
 
 
260 aa  122  7e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1519  Crp/FNR family transcriptional regulator  32.59 
 
 
239 aa  121  8e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1802  CRP/FNR family transcriptional regulator  30.71 
 
 
260 aa  120  1.9999999999999998e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.642506 
 
 
-
 
NC_012792  Vapar_5993  transcriptional regulator, Crp/Fnr family  30.7 
 
 
246 aa  120  1.9999999999999998e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5358  Crp/FNR family transcriptional regulator  33.48 
 
 
240 aa  119  3e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3549  cyclic nucleotide-binding domain-containing protein  33.8 
 
 
239 aa  119  3e-26  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0520  Crp/FNR family transcriptional regulator  32.14 
 
 
239 aa  119  3.9999999999999996e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1787  CRP/FNR family transcriptional regulator  30.7 
 
 
232 aa  118  7e-26  Shewanella putrefaciens CN-32  Bacteria  normal  0.22283  n/a   
 
 
-
 
NC_010681  Bphyt_0905  transcriptional regulator, Crp/Fnr family  32.59 
 
 
243 aa  117  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5841  Crp/Fnr family transcriptional regulator  33.04 
 
 
242 aa  117  9.999999999999999e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2260  transcriptional regulator, Crp/Fnr family  31.11 
 
 
254 aa  117  9.999999999999999e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6495  Crp/FNR family transcriptional regulator  32.59 
 
 
267 aa  117  9.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.956501  normal 
 
 
-
 
NC_013889  TK90_1390  transcriptional regulator, Crp/Fnr family  31.76 
 
 
236 aa  117  9.999999999999999e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0413  transcriptional regulator, Crp/Fnr family  29.91 
 
 
240 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.37826  n/a   
 
 
-
 
NC_007948  Bpro_0178  cyclic nucleotide-binding domain-containing protein  35.89 
 
 
237 aa  116  3e-25  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4412  cyclic nucleotide-binding protein  33.19 
 
 
234 aa  116  3e-25  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.758145 
 
 
-
 
NC_010551  BamMC406_1130  Crp/FNR family transcriptional regulator  32.14 
 
 
267 aa  116  3e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.440884 
 
 
-
 
NC_007298  Daro_2043  cyclic nucleotide-binding  30.87 
 
 
439 aa  115  5e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4150  CRP/FNR family transcriptional regulator  30.86 
 
 
260 aa  115  8.999999999999998e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0712018  n/a   
 
 
-
 
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