188 homologs were found in PanDaTox collection
for query gene Mext_0075 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0075  hypothetical protein  100 
 
 
237 aa  480  1e-135  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0784  hypothetical protein  96.62 
 
 
237 aa  464  9.999999999999999e-131  Methylobacterium extorquens PA1  Bacteria  normal  0.195176  normal 
 
 
-
 
NC_011757  Mchl_3386  cyclic nucleotide-binding protein  86.08 
 
 
237 aa  422  1e-117  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0061  cyclic nucleotide-binding protein  86.08 
 
 
237 aa  422  1e-117  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6128  putative transcriptional regulator, Crp/Fnr family  66.38 
 
 
236 aa  311  5.999999999999999e-84  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1834  cyclic nucleotide-binding protein  61.6 
 
 
241 aa  295  5e-79  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3860  cyclic nucleotide-binding protein  57.2 
 
 
237 aa  262  3e-69  Methylobacterium populi BJ001  Bacteria  normal  normal  0.123136 
 
 
-
 
NC_010511  M446_1833  Crp/FNR family transcriptional regulator  61.82 
 
 
237 aa  249  4e-65  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0788  cyclic nucleotide-binding  49.57 
 
 
236 aa  228  5e-59  Methylobacterium extorquens PA1  Bacteria  normal  0.417677  normal 
 
 
-
 
NC_011757  Mchl_3376  cyclic nucleotide-binding protein  50.21 
 
 
236 aa  226  2e-58  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0789  cyclic nucleotide-binding  48.72 
 
 
240 aa  222  3e-57  Methylobacterium extorquens PA1  Bacteria  normal  0.424436  normal 
 
 
-
 
NC_011894  Mnod_3012  cyclic nucleotide-binding protein  47.66 
 
 
242 aa  206  2e-52  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.791421  n/a   
 
 
-
 
NC_010505  Mrad2831_2421  Crp/FNR family transcriptional regulator  48.89 
 
 
239 aa  192  4e-48  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.269594  normal 
 
 
-
 
NC_010725  Mpop_2074  putative transcriptional regulator, Crp/Fnr family  45.41 
 
 
246 aa  189  2e-47  Methylobacterium populi BJ001  Bacteria  normal  0.83722  normal 
 
 
-
 
NC_011757  Mchl_2397  cyclic nucleotide-binding protein  44.98 
 
 
243 aa  190  2e-47  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3374  transcriptional regulator, Crp/Fnr family  50.67 
 
 
256 aa  189  4e-47  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2120  cyclic nucleotide-binding  44.98 
 
 
243 aa  189  4e-47  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0341739 
 
 
-
 
NC_012858  Rleg_6918  putative transcriptional regulator, Crp/Fnr family  42.8 
 
 
255 aa  187  1e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_7015  putative transcriptional regulator, Crp/Fnr family  43.4 
 
 
241 aa  183  2.0000000000000003e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0954558  normal 
 
 
-
 
NC_012853  Rleg_5843  putative transcriptional regulator, Crp/Fnr family  47.56 
 
 
254 aa  182  5.0000000000000004e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.918646  normal 
 
 
-
 
NC_011988  Avi_5594  hypothetical protein  44.98 
 
 
238 aa  175  5e-43  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5762  putative transcriptional regulator, Crp/Fnr family  41.28 
 
 
241 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5879  putative transcriptional regulator, Crp/Fnr family  41.18 
 
 
255 aa  171  7.999999999999999e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.450162  normal 
 
 
-
 
NC_012853  Rleg_5885  putative transcriptional regulator, Crp/Fnr family  45.45 
 
 
219 aa  170  2e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5837  putative transcriptional regulator, Crp/Fnr family  41.18 
 
 
255 aa  170  2e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.561164  normal 
 
 
-
 
NC_012853  Rleg_5764  putative transcriptional regulator, Crp/Fnr family  40.43 
 
 
237 aa  168  8e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5568  putative transcriptional regulator, Crp/Fnr family  42.49 
 
 
239 aa  166  2.9999999999999998e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.192457  normal  0.0307688 
 
 
-
 
NC_012848  Rleg_4765  putative transcriptional regulator, Crp/Fnr family  37.87 
 
 
244 aa  165  6.9999999999999995e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.156733  normal  0.417355 
 
 
-
 
NC_012853  Rleg_5598  putative transcriptional regulator, Crp/Fnr family  38.79 
 
 
239 aa  164  1.0000000000000001e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  decreased coverage  0.00118165 
 
 
-
 
NC_011894  Mnod_5606  cyclic nucleotide-binding protein  41.56 
 
 
241 aa  164  1.0000000000000001e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2533  cyclic nucleotide-binding domain-containing protein  38.05 
 
 
245 aa  164  1.0000000000000001e-39  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.23322 
 
 
-
 
NC_012858  Rleg_6894  putative transcriptional regulator, Crp/Fnr family  39.15 
 
 
241 aa  163  2.0000000000000002e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.744269 
 
 
-
 
NC_009668  Oant_4306  CRP/FNR family transcriptional regulator  38.63 
 
 
236 aa  159  3e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4307  cyclic nucleotide-binding protein  36.29 
 
 
243 aa  153  2.9999999999999998e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0741  putative transcriptional regulator, Crp/Fnr family  36.17 
 
 
241 aa  151  8.999999999999999e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  39.56 
 
 
384 aa  150  1e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_013161  Cyan8802_4335  putative transcriptional regulator, Crp/Fnr family  35.84 
 
 
246 aa  150  2e-35  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.157616 
 
 
-
 
NC_011726  PCC8801_4275  cyclic nucleotide-binding protein  35.84 
 
 
246 aa  150  2e-35  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008340  Mlg_1115  Crp/FNR family transcriptional regulator  38.67 
 
 
250 aa  150  2e-35  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.804671  normal  0.524469 
 
 
-
 
NC_007614  Nmul_A0876  transcriptional regulator-related protein  37.83 
 
 
258 aa  143  3e-33  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2702  cyclic nucleotide-binding protein  36.74 
 
 
230 aa  142  6e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0905  transcriptional regulator, Crp/Fnr family  37.78 
 
 
243 aa  140  1.9999999999999998e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4966  cyclic nucleotide-binding protein  37.39 
 
 
255 aa  139  3e-32  Methylobacterium sp. 4-46  Bacteria  normal  0.916319  normal 
 
 
-
 
NC_013889  TK90_1390  transcriptional regulator, Crp/Fnr family  36.56 
 
 
236 aa  139  3.9999999999999997e-32  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1444  Crp/FNR family transcriptional regulator  37.44 
 
 
231 aa  138  6e-32  Caulobacter sp. K31  Bacteria  normal  normal  0.382452 
 
 
-
 
NC_007298  Daro_2043  cyclic nucleotide-binding  35.81 
 
 
439 aa  137  1e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2132  Crp/FNR family transcriptional regulator  37.33 
 
 
247 aa  137  1e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.0511998 
 
 
-
 
NC_008781  Pnap_1315  CRP/FNR family transcriptional regulator  35.24 
 
 
238 aa  136  3.0000000000000003e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.63413  normal 
 
 
-
 
NC_011884  Cyan7425_4412  cyclic nucleotide-binding protein  36.73 
 
 
234 aa  135  5e-31  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.758145 
 
 
-
 
NC_007953  Bxe_C0542  Crp/FNR family transcriptional regulator  34.63 
 
 
239 aa  135  5e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.936935  normal 
 
 
-
 
NC_007614  Nmul_A1182  Crp/FNR family transcriptional regulator  35.44 
 
 
240 aa  135  6.0000000000000005e-31  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.939173  n/a   
 
 
-
 
NC_011004  Rpal_3818  transcriptional regulator, Crp/Fnr family  35.09 
 
 
265 aa  134  9e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.827272  n/a   
 
 
-
 
NC_007948  Bpro_0177  Crp/FNR family transcriptional regulator  34.51 
 
 
238 aa  134  9.999999999999999e-31  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5104  Crp/FNR family transcriptional regulator  35.06 
 
 
243 aa  134  9.999999999999999e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5755  Crp/FNR family transcriptional regulator  35.06 
 
 
243 aa  134  9.999999999999999e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.132685 
 
 
-
 
NC_010515  Bcenmc03_4421  Crp/FNR family transcriptional regulator  35.06 
 
 
243 aa  134  9.999999999999999e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2723  CRP/FNR family transcriptional regulator  35.71 
 
 
232 aa  134  9.999999999999999e-31  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2486  cyclic nucleotide-binding domain-containing protein  36.44 
 
 
266 aa  133  1.9999999999999998e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.215074  normal 
 
 
-
 
NC_008789  Hhal_0397  CRP/FNR family transcriptional regulator  36.12 
 
 
244 aa  134  1.9999999999999998e-30  Halorhodospira halophila SL1  Bacteria  normal  0.934312  n/a   
 
 
-
 
NC_013422  Hneap_2260  transcriptional regulator, Crp/Fnr family  36.56 
 
 
254 aa  132  3e-30  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1637  transcriptional regulator, Crp/Fnr family  35.27 
 
 
232 aa  132  3.9999999999999996e-30  Shewanella baltica OS223  Bacteria  normal  0.0811489  hitchhiker  0.00000101787 
 
 
-
 
NC_011884  Cyan7425_4411  cyclic nucleotide-binding protein  34.91 
 
 
238 aa  132  5e-30  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.76047 
 
 
-
 
NC_009665  Shew185_2740  CRP/FNR family transcriptional regulator  35.27 
 
 
232 aa  132  5e-30  Shewanella baltica OS185  Bacteria  hitchhiker  0.00150781  n/a   
 
 
-
 
NC_007651  BTH_I0534  hypothetical protein  34.96 
 
 
344 aa  132  6.999999999999999e-30  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3549  cyclic nucleotide-binding domain-containing protein  36.02 
 
 
239 aa  131  7.999999999999999e-30  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4415  CRP/FNR family transcriptional regulator  37.61 
 
 
251 aa  131  9e-30  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0045  hypothetical protein  34.96 
 
 
269 aa  130  2.0000000000000002e-29  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1669  Crp/FNR family transcriptional regulator  35.56 
 
 
244 aa  130  2.0000000000000002e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0359086 
 
 
-
 
NC_008836  BMA10229_A2194  hypothetical protein  34.96 
 
 
269 aa  130  2.0000000000000002e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  0.396995  n/a   
 
 
-
 
NC_009074  BURPS668_0645  hypothetical protein  34.96 
 
 
269 aa  130  2.0000000000000002e-29  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0659  hypothetical protein  34.96 
 
 
269 aa  130  2.0000000000000002e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2513  hypothetical protein  34.96 
 
 
269 aa  130  2.0000000000000002e-29  Burkholderia mallei NCTC 10247  Bacteria  normal  0.225416  n/a   
 
 
-
 
NC_007434  BURPS1710b_0821  hypothetical protein  34.96 
 
 
312 aa  129  3e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2891  hypothetical protein  34.96 
 
 
269 aa  129  4.0000000000000003e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3898  Crp/FNR family transcriptional regulator  34.67 
 
 
239 aa  129  5.0000000000000004e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  0.472058  normal 
 
 
-
 
NC_008781  Pnap_3627  CRP/FNR family transcriptional regulator  35.87 
 
 
245 aa  128  6e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.460124 
 
 
-
 
NC_007951  Bxe_A3729  Crp/FNR family transcriptional regulator  35.56 
 
 
244 aa  128  8.000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3820  cyclic nucleotide-binding domain-containing protein  33.62 
 
 
239 aa  127  1.0000000000000001e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.051999  normal 
 
 
-
 
NC_010508  Bcenmc03_1684  Crp/FNR family transcriptional regulator  34.22 
 
 
239 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1693  Crp/FNR family transcriptional regulator  34.22 
 
 
239 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.3052  normal 
 
 
-
 
NC_009438  Sputcn32_1786  cyclic nucleotide-binding protein  35.11 
 
 
255 aa  127  1.0000000000000001e-28  Shewanella putrefaciens CN-32  Bacteria  normal  0.150342  n/a   
 
 
-
 
NC_010552  BamMC406_4113  CRP/FNR family transcriptional regulator  35.56 
 
 
260 aa  127  1.0000000000000001e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0413  transcriptional regulator, Crp/Fnr family  34.07 
 
 
240 aa  127  2.0000000000000002e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.37826  n/a   
 
 
-
 
NC_011004  Rpal_3464  putative transcriptional regulator, Crp/Fnr family  34.35 
 
 
257 aa  127  2.0000000000000002e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0401211  n/a   
 
 
-
 
NC_007951  Bxe_A2530  Crp/FNR family transcriptional regulator  35.11 
 
 
244 aa  127  2.0000000000000002e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.201087 
 
 
-
 
NC_010681  Bphyt_1714  transcriptional regulator, Crp/Fnr family  35.11 
 
 
244 aa  127  2.0000000000000002e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2958  cyclic nucleotide-binding  35.43 
 
 
248 aa  126  3e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.369311  normal 
 
 
-
 
NC_008391  Bamb_3639  CRP/FNR family transcriptional regulator  35.56 
 
 
260 aa  126  3e-28  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4389  CRP/FNR family transcriptional regulator  33.19 
 
 
260 aa  126  3e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5838  cyclic nucleotide-binding  34.05 
 
 
242 aa  126  4.0000000000000003e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.358125  n/a   
 
 
-
 
NC_008061  Bcen_5274  Crp/FNR family transcriptional regulator  33.33 
 
 
239 aa  125  4.0000000000000003e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5585  Crp/FNR family transcriptional regulator  33.33 
 
 
239 aa  125  4.0000000000000003e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_008061  Bcen_5290  Crp/FNR family transcriptional regulator  33.78 
 
 
239 aa  125  5e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.420985  n/a   
 
 
-
 
NC_008543  Bcen2424_5568  Crp/FNR family transcriptional regulator  33.78 
 
 
239 aa  125  5e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5993  transcriptional regulator, Crp/Fnr family  35.37 
 
 
246 aa  125  5e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1963  CRP/FNR family transcriptional regulator  35.81 
 
 
246 aa  125  6e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.555453  normal 
 
 
-
 
NC_007511  Bcep18194_B1802  CRP/FNR family transcriptional regulator  34.22 
 
 
260 aa  125  7e-28  Burkholderia sp. 383  Bacteria  normal  normal  0.642506 
 
 
-
 
NC_004347  SO_2551  transcriptional regulator-related protein  34.67 
 
 
255 aa  125  8.000000000000001e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_5720  Crp/FNR family transcriptional regulator  32.91 
 
 
267 aa  124  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  hitchhiker  0.00164993 
 
 
-
 
NC_008061  Bcen_4150  CRP/FNR family transcriptional regulator  34.67 
 
 
260 aa  124  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0712018  n/a   
 
 
-
 
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