182 homologs were found in PanDaTox collection
for query gene VIBHAR_02539 on replicon NC_009783
Organism: Vibrio harveyi ATCC BAA-1116



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009783  VIBHAR_02539  hypothetical protein  100 
 
 
236 aa  497  1e-140  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003579  radical activating enzyme  75.21 
 
 
293 aa  385  1e-106  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1084  putative 4Fe-4S ferredoxin, iron-sulfur binding  58.72 
 
 
303 aa  299  2e-80  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3944  radical SAM domain-containing protein  53.33 
 
 
292 aa  278  4e-74  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0270  radical SAM domain-containing protein  52.5 
 
 
292 aa  268  5.9999999999999995e-71  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00000473608 
 
 
-
 
NC_009831  Ssed_0267  putative pyruvate formate lyase activating enzyme  50.63 
 
 
298 aa  263  1e-69  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0149457 
 
 
-
 
NC_009997  Sbal195_2401  radical SAM domain-containing protein  48.95 
 
 
298 aa  261  8.999999999999999e-69  Shewanella baltica OS195  Bacteria  normal  0.312992  unclonable  0.00000836266 
 
 
-
 
NC_011663  Sbal223_2061  Radical SAM domain protein  48.95 
 
 
298 aa  260  1e-68  Shewanella baltica OS223  Bacteria  normal  unclonable  0.00000000000288905 
 
 
-
 
NC_004347  SO_2408  radical activating enzyme  48.95 
 
 
286 aa  259  3e-68  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2284  radical SAM domain-containing protein  48.12 
 
 
298 aa  258  4e-68  Shewanella baltica OS185  Bacteria  hitchhiker  0.00260507  n/a   
 
 
-
 
NC_009052  Sbal_2065  radical SAM domain-containing protein  47.3 
 
 
300 aa  252  4.0000000000000004e-66  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1984  radical SAM domain-containing protein  48.87 
 
 
320 aa  251  7e-66  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.450438  n/a   
 
 
-
 
NC_011080  SNSL254_A4921  pyruvate formate lyase activating enzyme  46.19 
 
 
287 aa  221  4.9999999999999996e-57  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4886  pyruvate formate lyase activating enzyme  46.19 
 
 
287 aa  221  4.9999999999999996e-57  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0614153  n/a   
 
 
-
 
NC_011083  SeHA_C4973  pyruvate formate lyase activating enzyme  46.19 
 
 
287 aa  221  9e-57  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.577557  normal 
 
 
-
 
NC_011205  SeD_A4980  pyruvate formate lyase activating enzyme  45.76 
 
 
287 aa  219  3e-56  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.902486  normal 
 
 
-
 
NC_011094  SeSA_A4819  pyruvate formate lyase activating enzyme  45.34 
 
 
287 aa  219  3.9999999999999997e-56  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.387597  normal 
 
 
-
 
NC_010498  EcSMS35_4927  radical SAM domain-containing protein  43.64 
 
 
287 aa  209  4e-53  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_04255  predicted pyruvate formate lyase activating enzyme  44.73 
 
 
287 aa  207  1e-52  Escherichia coli BL21(DE3)  Bacteria  normal  0.542782  n/a   
 
 
-
 
CP001637  EcDH1_3619  Radical SAM domain protein  44.73 
 
 
287 aa  207  1e-52  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04221  hypothetical protein  44.73 
 
 
287 aa  207  1e-52  Escherichia coli BL21  Bacteria  normal  0.606707  n/a   
 
 
-
 
NC_010468  EcolC_3677  radical SAM domain-containing protein  43.64 
 
 
287 aa  207  2e-52  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.005025 
 
 
-
 
NC_009801  EcE24377A_4977  radical SAM domain-containing protein  44.73 
 
 
287 aa  205  4e-52  Escherichia coli E24377A  Bacteria  normal  0.258865  n/a   
 
 
-
 
NC_009800  EcHS_A4614  radical SAM domain-containing protein  44.3 
 
 
287 aa  205  5e-52  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5892  radical SAM domain protein  44.14 
 
 
287 aa  203  2e-51  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4923  radical SAM domain protein  43.88 
 
 
287 aa  202  5e-51  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0539  radical SAM domain-containing protein  43.4 
 
 
286 aa  191  9e-48  Enterobacter sp. 638  Bacteria  normal  0.536382  normal  0.0504206 
 
 
-
 
NC_013517  Sterm_1777  (Formate-C-acetyltransferase)-activating enzyme  36.76 
 
 
279 aa  131  6.999999999999999e-30  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000493175  n/a   
 
 
-
 
NC_008262  CPR_0637  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  35.47 
 
 
273 aa  130  3e-29  Clostridium perfringens SM101  Bacteria  normal  0.581706  n/a   
 
 
-
 
NC_008261  CPF_0641  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  34.93 
 
 
273 aa  125  7e-28  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1874  radical SAM domain-containing protein  36.17 
 
 
241 aa  123  3e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1578  radical SAM family protein  33.48 
 
 
280 aa  122  4e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0135  (Formate-C-acetyltransferase)-activating enzyme  34.34 
 
 
294 aa  118  7e-26  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.957254 
 
 
-
 
NC_009783  VIBHAR_02538  pyruvate formate-lyase activating enzyme  98.15 
 
 
54 aa  115  5e-25  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_2752  glycyl-radical activating family protein  24.64 
 
 
310 aa  75.1  0.000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2581  pyruvate formate-lyase activating enzyme  29.82 
 
 
240 aa  73.6  0.000000000003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_23160  pyruvate formate-lyase activating enzyme  28.89 
 
 
247 aa  72.8  0.000000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3258  glycyl-radical enzyme activating protein family  24.87 
 
 
303 aa  73.2  0.000000000004  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.807185  n/a   
 
 
-
 
NC_013173  Dbac_2365  glycyl-radical enzyme activating protein family  28.49 
 
 
306 aa  72.4  0.000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00000514278  n/a   
 
 
-
 
NC_013421  Pecwa_3715  glycyl-radical enzyme activating protein family  27.17 
 
 
316 aa  72.4  0.000000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1396  glycerol dehydratase activating enzyme  23.65 
 
 
322 aa  71.2  0.00000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.214688  n/a   
 
 
-
 
NC_011312  VSAL_I1953  pyruvate formate lyase-activating enzyme 1  28.43 
 
 
245 aa  71.2  0.00000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_1999  pyruvate-formate lyase activating enzyme  28.26 
 
 
263 aa  70.1  0.00000000003  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.637211  n/a   
 
 
-
 
NC_010718  Nther_2477  glycyl-radical enzyme activating protein family  25.95 
 
 
310 aa  69.7  0.00000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.731109  normal 
 
 
-
 
NC_010498  EcSMS35_2219  pyruvate formate lyase-activating enzyme 1  30.3 
 
 
246 aa  69.7  0.00000000003  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.542279 
 
 
-
 
NC_009438  Sputcn32_0207  glycyl-radical activating family protein  27.18 
 
 
306 aa  69.3  0.00000000005  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1003  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
265 aa  68.9  0.00000000006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0975  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
265 aa  68.9  0.00000000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.462536  n/a   
 
 
-
 
NC_011094  SeSA_A1083  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
265 aa  68.9  0.00000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.704189  normal 
 
 
-
 
NC_011083  SeHA_C1068  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
265 aa  68.9  0.00000000006  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.763935 
 
 
-
 
NC_011772  BCG9842_B4810  pyruvate formate-lyase-activating enzyme  30.56 
 
 
243 aa  68.6  0.00000000007  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003978  pyruvate formate-lyase activating enzyme  29.76 
 
 
246 aa  68.9  0.00000000007  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1034  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
265 aa  68.9  0.00000000007  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.633483  normal  0.712061 
 
 
-
 
CP001509  ECD_00906  pyruvate formate lyase activating enzyme 1  29.8 
 
 
246 aa  67.8  0.0000000001  Escherichia coli BL21(DE3)  Bacteria  normal  0.84876  n/a   
 
 
-
 
CP001637  EcDH1_2741  pyruvate formate-lyase activating enzyme  29.8 
 
 
246 aa  67.8  0.0000000001  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00913  hypothetical protein  29.8 
 
 
246 aa  67.8  0.0000000001  Escherichia coli BL21  Bacteria  normal  0.880778  n/a   
 
 
-
 
NC_011353  ECH74115_1063  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
246 aa  67.8  0.0000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01544  pyruvate formate-lyase 1 activating enzyme  27.64 
 
 
215 aa  67.8  0.0000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009800  EcHS_A1008  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
246 aa  67.8  0.0000000001  Escherichia coli HS  Bacteria  normal  0.312248  n/a   
 
 
-
 
NC_009801  EcE24377A_0980  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
265 aa  68.2  0.0000000001  Escherichia coli E24377A  Bacteria  normal  0.777271  n/a   
 
 
-
 
NC_010468  EcolC_2694  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
246 aa  67.8  0.0000000001  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.489101 
 
 
-
 
NC_010658  SbBS512_E2426  pyruvate formate lyase-activating enzyme 1  29.8 
 
 
255 aa  67.8  0.0000000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.0764987  n/a   
 
 
-
 
NC_009012  Cthe_0506  pyruvate formate-lyase activating enzyme  24.4 
 
 
238 aa  67  0.0000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0339577  n/a   
 
 
-
 
NC_010001  Cphy_2820  pyruvate formate-lyase activating enzyme  29.52 
 
 
250 aa  67.4  0.0000000002  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000000272816  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0427  pyruvate formate-lyase activating enzyme  29.86 
 
 
243 aa  67.4  0.0000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1176  glycyl-radical activating protein  26.47 
 
 
306 aa  66.2  0.0000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1460  pyruvate formate lyase-activating enzyme 1  28.14 
 
 
246 aa  66.2  0.0000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2346  pyruvate formate lyase-activating enzyme 1  28.3 
 
 
246 aa  66.2  0.0000000004  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0432  pyruvate formate-lyase activating enzyme  30.56 
 
 
243 aa  65.9  0.0000000005  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0482  pyruvate formate-lyase-activating enzyme  30.77 
 
 
243 aa  65.9  0.0000000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0510  pyruvate formate-lyase-activating enzyme  30.77 
 
 
243 aa  65.9  0.0000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1728  pyruvate formate lyase-activating enzyme 1  28.3 
 
 
246 aa  65.5  0.0000000006  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.548183  n/a   
 
 
-
 
NC_013421  Pecwa_1996  pyruvate formate lyase-activating enzyme 1  28.3 
 
 
246 aa  65.9  0.0000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0491  pyruvate formate-lyase-activating enzyme  30.77 
 
 
243 aa  65.9  0.0000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0425  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  30.07 
 
 
243 aa  65.5  0.0000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2245  pyruvate formate lyase-activating enzyme 1  27.67 
 
 
246 aa  65.5  0.0000000007  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2679  pyruvate formate lyase-activating enzyme 1  30.82 
 
 
265 aa  65.5  0.0000000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0421  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  30.07 
 
 
243 aa  65.1  0.0000000008  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0513  pyruvate formate-lyase-activating enzyme  29.17 
 
 
243 aa  65.1  0.0000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2591  pyruvate formate lyase-activating enzyme 1  30.82 
 
 
244 aa  65.5  0.0000000008  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1701  pyruvate formate lyase-activating enzyme 1  30.13 
 
 
246 aa  65.1  0.0000000008  Serratia proteamaculans 568  Bacteria  normal  normal  0.276107 
 
 
-
 
NC_010159  YpAngola_A1618  pyruvate formate lyase-activating enzyme 1  30.82 
 
 
244 aa  65.5  0.0000000008  Yersinia pestis Angola  Bacteria  normal  0.344326  normal 
 
 
-
 
NC_003909  BCE_0564  pyruvate formate-lyase-activating enzyme  30.07 
 
 
243 aa  65.1  0.0000000009  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0566  pyruvate formate-lyase-activating enzyme  30.07 
 
 
243 aa  65.1  0.0000000009  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1605  pyruvate-formate lyase activating enzyme  27.49 
 
 
266 aa  64.3  0.000000002  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1422  pyruvate formate lyase-activating enzyme 1  28.79 
 
 
246 aa  63.9  0.000000002  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0367  glycyl-radical enzyme activating protein family  23.65 
 
 
310 aa  63.9  0.000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0692  pyruvate-formate lyase-activating enzyme  28.57 
 
 
293 aa  62.4  0.000000005  Bifidobacterium longum DJO10A  Bacteria  normal  0.104164  n/a   
 
 
-
 
NC_009438  Sputcn32_2379  pyruvate formate lyase-activating enzyme 1  27.62 
 
 
246 aa  62  0.000000008  Shewanella putrefaciens CN-32  Bacteria  normal  0.0648375  n/a   
 
 
-
 
NC_002939  GSU2102  pyruvate formate-lyase-activating enzyme, putative  28.67 
 
 
298 aa  60.5  0.00000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.510382  n/a   
 
 
-
 
NC_004347  SO_2913  pyruvate formate lyase-activating enzyme 1  26.29 
 
 
246 aa  60.8  0.00000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3391  pyruvate formate-lyase activating enzyme  25.81 
 
 
249 aa  60.5  0.00000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1493  pyruvate formate lyase-activating enzyme 1  26.29 
 
 
246 aa  60.5  0.00000002  Shewanella sp. MR-4  Bacteria  normal  0.0621061  normal  0.601453 
 
 
-
 
NC_008322  Shewmr7_1560  pyruvate formate lyase-activating enzyme 1  26.29 
 
 
246 aa  60.5  0.00000002  Shewanella sp. MR-7  Bacteria  normal  0.0861855  normal  0.127939 
 
 
-
 
NC_012917  PC1_3544  glycyl-radical enzyme activating protein family  23.41 
 
 
316 aa  60.5  0.00000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4091  glycyl-radical enzyme activating protein family  25.79 
 
 
305 aa  60.8  0.00000002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0038  pyruvate formate-lyase activating enzyme  26.35 
 
 
229 aa  60.8  0.00000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2500  glycyl-radical enzyme activating protein family  25.49 
 
 
294 aa  60.5  0.00000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1554  pyruvate formate lyase-activating enzyme 1  26.29 
 
 
246 aa  60.1  0.00000003  Shewanella sp. ANA-3  Bacteria  normal  normal  0.202343 
 
 
-
 
NC_009052  Sbal_2672  pyruvate formate lyase-activating enzyme 1  25.23 
 
 
246 aa  60.1  0.00000003  Shewanella baltica OS155  Bacteria  normal  0.209524  n/a   
 
 
-
 
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