More than 300 homologs were found in PanDaTox collection
for query gene Sfri_1984 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_1984  radical SAM domain-containing protein  100 
 
 
320 aa  663    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.450438  n/a   
 
 
-
 
NC_011663  Sbal223_2061  Radical SAM domain protein  66.56 
 
 
298 aa  449  1e-125  Shewanella baltica OS223  Bacteria  normal  unclonable  0.00000000000288905 
 
 
-
 
NC_009665  Shew185_2284  radical SAM domain-containing protein  65.62 
 
 
298 aa  447  1e-125  Shewanella baltica OS185  Bacteria  hitchhiker  0.00260507  n/a   
 
 
-
 
NC_009997  Sbal195_2401  radical SAM domain-containing protein  65.31 
 
 
298 aa  443  1e-123  Shewanella baltica OS195  Bacteria  normal  0.312992  unclonable  0.00000836266 
 
 
-
 
NC_009052  Sbal_2065  radical SAM domain-containing protein  65.22 
 
 
300 aa  439  9.999999999999999e-123  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2408  radical activating enzyme  66.67 
 
 
286 aa  436  1e-121  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_0267  putative pyruvate formate lyase activating enzyme  61.56 
 
 
298 aa  406  1.0000000000000001e-112  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0149457 
 
 
-
 
NC_010506  Swoo_0270  radical SAM domain-containing protein  56.56 
 
 
292 aa  400  9.999999999999999e-111  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00000473608 
 
 
-
 
NC_009901  Spea_3944  radical SAM domain-containing protein  56.88 
 
 
292 aa  396  1e-109  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003579  radical activating enzyme  49.68 
 
 
293 aa  333  2e-90  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1084  putative 4Fe-4S ferredoxin, iron-sulfur binding  48.26 
 
 
303 aa  325  5e-88  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4927  radical SAM domain-containing protein  45.77 
 
 
287 aa  305  5.0000000000000004e-82  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4921  pyruvate formate lyase activating enzyme  46.39 
 
 
287 aa  304  1.0000000000000001e-81  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4886  pyruvate formate lyase activating enzyme  46.39 
 
 
287 aa  304  1.0000000000000001e-81  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0614153  n/a   
 
 
-
 
NC_011083  SeHA_C4973  pyruvate formate lyase activating enzyme  46.39 
 
 
287 aa  303  2.0000000000000002e-81  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.577557  normal 
 
 
-
 
CP001509  ECD_04255  predicted pyruvate formate lyase activating enzyme  45.45 
 
 
287 aa  303  4.0000000000000003e-81  Escherichia coli BL21(DE3)  Bacteria  normal  0.542782  n/a   
 
 
-
 
CP001637  EcDH1_3619  Radical SAM domain protein  45.45 
 
 
287 aa  303  4.0000000000000003e-81  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04221  hypothetical protein  45.45 
 
 
287 aa  303  4.0000000000000003e-81  Escherichia coli BL21  Bacteria  normal  0.606707  n/a   
 
 
-
 
NC_011205  SeD_A4980  pyruvate formate lyase activating enzyme  46.08 
 
 
287 aa  302  6.000000000000001e-81  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.902486  normal 
 
 
-
 
NC_011094  SeSA_A4819  pyruvate formate lyase activating enzyme  45.77 
 
 
287 aa  302  6.000000000000001e-81  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.387597  normal 
 
 
-
 
NC_009800  EcHS_A4614  radical SAM domain-containing protein  45.77 
 
 
287 aa  301  1e-80  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3677  radical SAM domain-containing protein  45.45 
 
 
287 aa  300  2e-80  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.005025 
 
 
-
 
NC_010658  SbBS512_E4923  radical SAM domain protein  45.14 
 
 
287 aa  300  3e-80  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4977  radical SAM domain-containing protein  45.45 
 
 
287 aa  300  3e-80  Escherichia coli E24377A  Bacteria  normal  0.258865  n/a   
 
 
-
 
NC_011353  ECH74115_5892  radical SAM domain protein  44.83 
 
 
287 aa  298  8e-80  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0539  radical SAM domain-containing protein  43.26 
 
 
286 aa  278  1e-73  Enterobacter sp. 638  Bacteria  normal  0.536382  normal  0.0504206 
 
 
-
 
NC_009783  VIBHAR_02539  hypothetical protein  48.87 
 
 
236 aa  251  1e-65  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013203  Apar_0135  (Formate-C-acetyltransferase)-activating enzyme  33.44 
 
 
294 aa  193  4e-48  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.957254 
 
 
-
 
NC_013517  Sterm_1777  (Formate-C-acetyltransferase)-activating enzyme  35.69 
 
 
279 aa  187  2e-46  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000493175  n/a   
 
 
-
 
NC_009012  Cthe_1578  radical SAM family protein  35.44 
 
 
280 aa  179  7e-44  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0637  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  31.29 
 
 
273 aa  178  1e-43  Clostridium perfringens SM101  Bacteria  normal  0.581706  n/a   
 
 
-
 
NC_008261  CPF_0641  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  31.17 
 
 
273 aa  172  7.999999999999999e-42  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1874  radical SAM domain-containing protein  31.97 
 
 
241 aa  124  2e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3258  glycyl-radical enzyme activating protein family  24.83 
 
 
303 aa  109  5e-23  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.807185  n/a   
 
 
-
 
NC_013173  Dbac_2365  glycyl-radical enzyme activating protein family  25.94 
 
 
306 aa  102  8e-21  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00000514278  n/a   
 
 
-
 
NC_007925  RPC_1176  glycyl-radical activating protein  27.82 
 
 
306 aa  99.8  5e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2192  glycyl-radical activating family protein  26.77 
 
 
307 aa  98.2  1e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2477  glycyl-radical enzyme activating protein family  24.05 
 
 
310 aa  98.2  2e-19  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.731109  normal 
 
 
-
 
NC_007643  Rru_A0916  pyruvate-formate lyase-activating enzyme  28.28 
 
 
306 aa  95.5  1e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0858803  n/a   
 
 
-
 
NC_009438  Sputcn32_0207  glycyl-radical activating family protein  26.51 
 
 
306 aa  95.1  1e-18  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2966  glycyl-radical activating family protein  25.34 
 
 
297 aa  93.6  4e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3715  glycyl-radical enzyme activating protein family  25.57 
 
 
316 aa  92.8  6e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4091  glycyl-radical enzyme activating protein family  25.51 
 
 
305 aa  90.9  3e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2752  glycyl-radical activating family protein  24.5 
 
 
310 aa  90.5  4e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_23160  pyruvate formate-lyase activating enzyme  35.51 
 
 
247 aa  89.7  6e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0980  glycyl-radical activating family protein  21.21 
 
 
297 aa  89.4  7e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.131362 
 
 
-
 
NC_011830  Dhaf_1247  glycyl-radical enzyme activating protein family  23.31 
 
 
299 aa  86.7  5e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3054  radical-activating enzyme  24.66 
 
 
302 aa  85.9  8e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.969131  n/a   
 
 
-
 
NC_011830  Dhaf_0367  glycyl-radical enzyme activating protein family  24.22 
 
 
310 aa  84  0.000000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3704  glycyl-radical enzyme activating protein family  23.78 
 
 
304 aa  82.8  0.000000000000007  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0168  glycyl-radical enzyme activating protein family  23.81 
 
 
303 aa  81.3  0.00000000000002  Aciduliprofundum boonei T469  Archaea  normal  0.465492  n/a   
 
 
-
 
NC_007498  Pcar_1396  glycerol dehydratase activating enzyme  21.77 
 
 
322 aa  81.6  0.00000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.214688  n/a   
 
 
-
 
NC_002939  GSU2102  pyruvate formate-lyase-activating enzyme, putative  23.73 
 
 
298 aa  80.9  0.00000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.510382  n/a   
 
 
-
 
NC_013522  Taci_1438  glycyl-radical enzyme activating protein family  25.42 
 
 
301 aa  79.7  0.00000000000006  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2500  glycyl-radical enzyme activating protein family  24.44 
 
 
294 aa  79.7  0.00000000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3391  pyruvate formate-lyase activating enzyme  29.44 
 
 
249 aa  78.2  0.0000000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1418  glycyl-radical activating family protein  23.26 
 
 
315 aa  78.2  0.0000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3281  radical-activating enzyme  23.55 
 
 
320 aa  77.8  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1073  glycyl-radical enzyme activating protein family  22.92 
 
 
298 aa  77.4  0.0000000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.949815  n/a   
 
 
-
 
NC_013173  Dbac_2144  glycyl-radical enzyme activating protein family  24.92 
 
 
298 aa  76.3  0.0000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3277  glycyl-radical activating family protein  24.38 
 
 
318 aa  76.6  0.0000000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_17450  glycyl-radical enzyme activator family protein  21.86 
 
 
311 aa  76.3  0.0000000000007  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.478583  normal 
 
 
-
 
NC_007498  Pcar_0943  pyruvate-formate lyase-activating enzyme  23.81 
 
 
318 aa  75.9  0.0000000000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0115559  n/a   
 
 
-
 
NC_011725  BCB4264_A0513  pyruvate formate-lyase-activating enzyme  29.44 
 
 
243 aa  75.9  0.0000000000009  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3544  glycyl-radical enzyme activating protein family  24.92 
 
 
316 aa  75.5  0.000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1541  glycyl-radical activating protein  24.04 
 
 
348 aa  75.1  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.883211  normal  0.703307 
 
 
-
 
NC_003909  BCE_0564  pyruvate formate-lyase-activating enzyme  30 
 
 
243 aa  74.7  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0425  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  29.44 
 
 
243 aa  74.7  0.000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0566  pyruvate formate-lyase-activating enzyme  30 
 
 
243 aa  74.7  0.000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0421  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  29.44 
 
 
243 aa  73.9  0.000000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4810  pyruvate formate-lyase-activating enzyme  28.89 
 
 
243 aa  74.3  0.000000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2245  pyruvate formate lyase-activating enzyme 1  30.82 
 
 
246 aa  73.9  0.000000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0482  pyruvate formate-lyase-activating enzyme  28.89 
 
 
243 aa  73.6  0.000000000004  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0510  pyruvate formate-lyase-activating enzyme  28.89 
 
 
243 aa  73.6  0.000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0491  pyruvate formate-lyase-activating enzyme  28.89 
 
 
243 aa  73.6  0.000000000004  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007519  Dde_1272  radical-activating enzyme  23.26 
 
 
309 aa  73.2  0.000000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4904  glycyl-radical enzyme activating protein family  23.86 
 
 
327 aa  72.8  0.000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0506  pyruvate formate-lyase activating enzyme  26.6 
 
 
238 aa  72.8  0.000000000007  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0339577  n/a   
 
 
-
 
NC_013421  Pecwa_1996  pyruvate formate lyase-activating enzyme 1  29.56 
 
 
246 aa  72.8  0.000000000008  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1728  pyruvate formate lyase-activating enzyme 1  29.56 
 
 
246 aa  72.8  0.000000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.548183  n/a   
 
 
-
 
NC_013517  Sterm_2719  pyruvate formate-lyase activating enzyme  28.04 
 
 
241 aa  70.5  0.00000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0297  pyruvate formate-lyase activating enzyme  30.32 
 
 
247 aa  70.5  0.00000000004  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A1003  pyruvate formate lyase-activating enzyme 1  28.93 
 
 
265 aa  70.1  0.00000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1083  pyruvate formate lyase-activating enzyme 1  28.93 
 
 
265 aa  70.1  0.00000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.704189  normal 
 
 
-
 
NC_009832  Spro_1701  pyruvate formate lyase-activating enzyme 1  29.56 
 
 
246 aa  70.1  0.00000000005  Serratia proteamaculans 568  Bacteria  normal  normal  0.276107 
 
 
-
 
NC_011149  SeAg_B0975  pyruvate formate lyase-activating enzyme 1  28.93 
 
 
265 aa  70.1  0.00000000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.462536  n/a   
 
 
-
 
NC_011205  SeD_A1034  pyruvate formate lyase-activating enzyme 1  28.93 
 
 
265 aa  70.1  0.00000000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.633483  normal  0.712061 
 
 
-
 
NC_008751  Dvul_0490  glycyl-radical activating family protein  26.09 
 
 
307 aa  70.1  0.00000000005  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.164514 
 
 
-
 
NC_010184  BcerKBAB4_0427  pyruvate formate-lyase activating enzyme  27.78 
 
 
243 aa  70.1  0.00000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1068  pyruvate formate lyase-activating enzyme 1  28.93 
 
 
265 aa  70.1  0.00000000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.763935 
 
 
-
 
NC_008532  STER_1605  pyruvate-formate lyase activating enzyme  30.54 
 
 
266 aa  69.7  0.00000000006  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1460  pyruvate formate lyase-activating enzyme 1  28.65 
 
 
246 aa  69.3  0.00000000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1586  glycyl-radical enzyme activating protein family  24.57 
 
 
314 aa  68.9  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0487316  n/a   
 
 
-
 
NC_010001  Cphy_2820  pyruvate formate-lyase activating enzyme  29.56 
 
 
250 aa  68.6  0.0000000001  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000000272816  n/a   
 
 
-
 
NC_010465  YPK_2679  pyruvate formate lyase-activating enzyme 1  29.56 
 
 
265 aa  68.6  0.0000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0432  pyruvate formate-lyase activating enzyme  27.78 
 
 
243 aa  68.9  0.0000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1358  glycyl-radical enzyme activating protein family  21.21 
 
 
310 aa  68.6  0.0000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3308  pyruvate formate lyase-activating enzyme 1  27.37 
 
 
246 aa  68.6  0.0000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.760643  normal 
 
 
-
 
NC_009801  EcE24377A_0980  pyruvate formate lyase-activating enzyme 1  28.93 
 
 
265 aa  68.6  0.0000000001  Escherichia coli E24377A  Bacteria  normal  0.777271  n/a   
 
 
-
 
NC_012892  B21_00913  hypothetical protein  28.93 
 
 
246 aa  68.2  0.0000000002  Escherichia coli BL21  Bacteria  normal  0.880778  n/a   
 
 
-
 
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