298 homologs were found in PanDaTox collection
for query gene VSAL_II1084 on replicon NC_011313
Organism: Aliivibrio salmonicida LFI1238



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011313  VSAL_II1084  putative 4Fe-4S ferredoxin, iron-sulfur binding  100 
 
 
303 aa  632  1e-180  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003579  radical activating enzyme  60.21 
 
 
293 aa  379  1e-104  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0267  putative pyruvate formate lyase activating enzyme  58.33 
 
 
298 aa  367  1e-100  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0149457 
 
 
-
 
NC_009901  Spea_3944  radical SAM domain-containing protein  54.67 
 
 
292 aa  360  2e-98  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0270  radical SAM domain-containing protein  55.02 
 
 
292 aa  357  1.9999999999999998e-97  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00000473608 
 
 
-
 
NC_004347  SO_2408  radical activating enzyme  55.79 
 
 
286 aa  346  2e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2061  Radical SAM domain protein  52.19 
 
 
298 aa  339  2.9999999999999998e-92  Shewanella baltica OS223  Bacteria  normal  unclonable  0.00000000000288905 
 
 
-
 
NC_009665  Shew185_2284  radical SAM domain-containing protein  50.84 
 
 
298 aa  334  9e-91  Shewanella baltica OS185  Bacteria  hitchhiker  0.00260507  n/a   
 
 
-
 
NC_009997  Sbal195_2401  radical SAM domain-containing protein  51.52 
 
 
298 aa  332  5e-90  Shewanella baltica OS195  Bacteria  normal  0.312992  unclonable  0.00000836266 
 
 
-
 
NC_009052  Sbal_2065  radical SAM domain-containing protein  50.84 
 
 
300 aa  327  2.0000000000000001e-88  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1984  radical SAM domain-containing protein  48.26 
 
 
320 aa  325  4.0000000000000003e-88  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.450438  n/a   
 
 
-
 
NC_009783  VIBHAR_02539  hypothetical protein  58.72 
 
 
236 aa  299  3e-80  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011205  SeD_A4980  pyruvate formate lyase activating enzyme  47.22 
 
 
287 aa  294  1e-78  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.902486  normal 
 
 
-
 
NC_011083  SeHA_C4973  pyruvate formate lyase activating enzyme  46.88 
 
 
287 aa  293  3e-78  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.577557  normal 
 
 
-
 
NC_011149  SeAg_B4886  pyruvate formate lyase activating enzyme  46.88 
 
 
287 aa  292  6e-78  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0614153  n/a   
 
 
-
 
NC_011080  SNSL254_A4921  pyruvate formate lyase activating enzyme  46.88 
 
 
287 aa  292  6e-78  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0539  radical SAM domain-containing protein  47.22 
 
 
286 aa  291  1e-77  Enterobacter sp. 638  Bacteria  normal  0.536382  normal  0.0504206 
 
 
-
 
NC_011094  SeSA_A4819  pyruvate formate lyase activating enzyme  46.53 
 
 
287 aa  290  2e-77  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.387597  normal 
 
 
-
 
NC_010468  EcolC_3677  radical SAM domain-containing protein  47.22 
 
 
287 aa  286  2e-76  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.005025 
 
 
-
 
CP001509  ECD_04255  predicted pyruvate formate lyase activating enzyme  45.99 
 
 
287 aa  282  5.000000000000001e-75  Escherichia coli BL21(DE3)  Bacteria  normal  0.542782  n/a   
 
 
-
 
CP001637  EcDH1_3619  Radical SAM domain protein  45.99 
 
 
287 aa  282  5.000000000000001e-75  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04221  hypothetical protein  45.99 
 
 
287 aa  282  5.000000000000001e-75  Escherichia coli BL21  Bacteria  normal  0.606707  n/a   
 
 
-
 
NC_010658  SbBS512_E4923  radical SAM domain protein  45.99 
 
 
287 aa  281  7.000000000000001e-75  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4977  radical SAM domain-containing protein  45.64 
 
 
287 aa  280  2e-74  Escherichia coli E24377A  Bacteria  normal  0.258865  n/a   
 
 
-
 
NC_010498  EcSMS35_4927  radical SAM domain-containing protein  45.64 
 
 
287 aa  280  2e-74  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A4614  radical SAM domain-containing protein  45.3 
 
 
287 aa  279  5e-74  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5892  radical SAM domain protein  45.3 
 
 
287 aa  278  1e-73  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1777  (Formate-C-acetyltransferase)-activating enzyme  40.94 
 
 
279 aa  205  8e-52  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000493175  n/a   
 
 
-
 
NC_008262  CPR_0637  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  39.76 
 
 
273 aa  191  1e-47  Clostridium perfringens SM101  Bacteria  normal  0.581706  n/a   
 
 
-
 
NC_009012  Cthe_1578  radical SAM family protein  41.83 
 
 
280 aa  191  1e-47  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0135  (Formate-C-acetyltransferase)-activating enzyme  37.59 
 
 
294 aa  190  2.9999999999999997e-47  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.957254 
 
 
-
 
NC_008261  CPF_0641  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  39.76 
 
 
273 aa  189  5e-47  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1874  radical SAM domain-containing protein  36 
 
 
241 aa  167  2e-40  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0367  glycyl-radical enzyme activating protein family  27.45 
 
 
310 aa  111  2.0000000000000002e-23  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2365  glycyl-radical enzyme activating protein family  28.35 
 
 
306 aa  107  2e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00000514278  n/a   
 
 
-
 
NC_009438  Sputcn32_0207  glycyl-radical activating family protein  30.63 
 
 
306 aa  107  3e-22  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3258  glycyl-radical enzyme activating protein family  26.14 
 
 
303 aa  107  3e-22  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.807185  n/a   
 
 
-
 
NC_009253  Dred_2752  glycyl-radical activating family protein  29.82 
 
 
310 aa  107  3e-22  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1176  glycyl-radical activating protein  28.45 
 
 
306 aa  106  4e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2477  glycyl-radical enzyme activating protein family  29.66 
 
 
310 aa  105  1e-21  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.731109  normal 
 
 
-
 
NC_013926  Aboo_0168  glycyl-radical enzyme activating protein family  29.34 
 
 
303 aa  100  2e-20  Aciduliprofundum boonei T469  Archaea  normal  0.465492  n/a   
 
 
-
 
NC_007643  Rru_A0916  pyruvate-formate lyase-activating enzyme  27.88 
 
 
306 aa  100  4e-20  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0858803  n/a   
 
 
-
 
NC_007498  Pcar_1396  glycerol dehydratase activating enzyme  27.02 
 
 
322 aa  99.8  5e-20  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.214688  n/a   
 
 
-
 
NC_009943  Dole_2192  glycyl-radical activating family protein  31.37 
 
 
307 aa  99.4  6e-20  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0980  glycyl-radical activating family protein  28.47 
 
 
297 aa  99.4  7e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.131362 
 
 
-
 
NC_013421  Pecwa_4091  glycyl-radical enzyme activating protein family  30.51 
 
 
305 aa  97.1  3e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3704  glycyl-radical enzyme activating protein family  27.38 
 
 
304 aa  97.1  3e-19  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3715  glycyl-radical enzyme activating protein family  27.59 
 
 
316 aa  94.7  2e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2102  pyruvate formate-lyase-activating enzyme, putative  26.56 
 
 
298 aa  93.2  5e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.510382  n/a   
 
 
-
 
NC_011899  Hore_23160  pyruvate formate-lyase activating enzyme  25.44 
 
 
247 aa  92.8  6e-18  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2966  glycyl-radical activating family protein  24.53 
 
 
297 aa  92  1e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3391  pyruvate formate-lyase activating enzyme  27.91 
 
 
249 aa  90.5  3e-17  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3544  glycyl-radical enzyme activating protein family  26.39 
 
 
316 aa  89  8e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3281  radical-activating enzyme  25.98 
 
 
320 aa  88.2  2e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_17450  glycyl-radical enzyme activator family protein  24.24 
 
 
311 aa  87.4  3e-16  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.478583  normal 
 
 
-
 
NC_007519  Dde_1272  radical-activating enzyme  28.11 
 
 
309 aa  86.3  5e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1493  pyruvate formate lyase-activating enzyme 1  28.02 
 
 
246 aa  86.3  6e-16  Shewanella sp. MR-4  Bacteria  normal  0.0621061  normal  0.601453 
 
 
-
 
NC_008577  Shewana3_1554  pyruvate formate lyase-activating enzyme 1  27.31 
 
 
246 aa  86.3  6e-16  Shewanella sp. ANA-3  Bacteria  normal  normal  0.202343 
 
 
-
 
NC_008322  Shewmr7_1560  pyruvate formate lyase-activating enzyme 1  27.31 
 
 
246 aa  85.5  9e-16  Shewanella sp. MR-7  Bacteria  normal  0.0861855  normal  0.127939 
 
 
-
 
NC_004347  SO_2913  pyruvate formate lyase-activating enzyme 1  27.63 
 
 
246 aa  85.5  0.000000000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_1996  pyruvate formate lyase-activating enzyme 1  26.44 
 
 
246 aa  84.7  0.000000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003978  pyruvate formate-lyase activating enzyme  26.56 
 
 
246 aa  84.7  0.000000000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1728  pyruvate formate lyase-activating enzyme 1  27.73 
 
 
246 aa  84.3  0.000000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.548183  n/a   
 
 
-
 
NC_008527  LACR_1999  pyruvate-formate lyase activating enzyme  26.56 
 
 
263 aa  84  0.000000000000003  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.637211  n/a   
 
 
-
 
NC_009457  VC0395_A1460  pyruvate formate lyase-activating enzyme 1  26.87 
 
 
246 aa  83.6  0.000000000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0482  pyruvate formate-lyase-activating enzyme  26.74 
 
 
243 aa  83.2  0.000000000000005  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0510  pyruvate formate-lyase-activating enzyme  26.74 
 
 
243 aa  83.2  0.000000000000005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0491  pyruvate formate-lyase-activating enzyme  26.74 
 
 
243 aa  83.2  0.000000000000005  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009092  Shew_2391  pyruvate formate lyase-activating enzyme 1  26.95 
 
 
246 aa  83.2  0.000000000000005  Shewanella loihica PV-4  Bacteria  normal  0.227753  normal  0.208715 
 
 
-
 
NC_005957  BT9727_0425  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  26.36 
 
 
243 aa  82.8  0.000000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2379  pyruvate formate lyase-activating enzyme 1  26.95 
 
 
246 aa  82.8  0.000000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  0.0648375  n/a   
 
 
-
 
NC_007519  Dde_3054  radical-activating enzyme  26.19 
 
 
302 aa  82.4  0.000000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.969131  n/a   
 
 
-
 
NC_003909  BCE_0564  pyruvate formate-lyase-activating enzyme  26.36 
 
 
243 aa  82.4  0.000000000000009  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0421  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  26.36 
 
 
243 aa  82.4  0.000000000000009  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2581  pyruvate formate-lyase activating enzyme  25.76 
 
 
240 aa  82.4  0.000000000000009  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0566  pyruvate formate-lyase-activating enzyme  26.36 
 
 
243 aa  82.4  0.000000000000009  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1953  pyruvate formate lyase-activating enzyme 1  26.95 
 
 
245 aa  81.6  0.00000000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1073  glycyl-radical enzyme activating protein family  27.69 
 
 
298 aa  82  0.00000000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.949815  n/a   
 
 
-
 
NC_011725  BCB4264_A0513  pyruvate formate-lyase-activating enzyme  26.36 
 
 
243 aa  81.6  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1435  glycyl-radical enzyme activating protein family  25.68 
 
 
312 aa  80.9  0.00000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2500  glycyl-radical enzyme activating protein family  25.52 
 
 
294 aa  81.3  0.00000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1247  glycyl-radical enzyme activating protein family  26.58 
 
 
299 aa  81.3  0.00000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0490  glycyl-radical activating family protein  27.24 
 
 
307 aa  81.3  0.00000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.164514 
 
 
-
 
NC_009832  Spro_1701  pyruvate formate lyase-activating enzyme 1  26.38 
 
 
246 aa  80.1  0.00000000000004  Serratia proteamaculans 568  Bacteria  normal  normal  0.276107 
 
 
-
 
NC_011149  SeAg_B0975  pyruvate formate lyase-activating enzyme 1  26.97 
 
 
265 aa  79.7  0.00000000000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.462536  n/a   
 
 
-
 
NC_011083  SeHA_C1068  pyruvate formate lyase-activating enzyme 1  26.97 
 
 
265 aa  79.7  0.00000000000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.763935 
 
 
-
 
NC_011094  SeSA_A1083  pyruvate formate lyase-activating enzyme 1  26.97 
 
 
265 aa  79.7  0.00000000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.704189  normal 
 
 
-
 
NC_011080  SNSL254_A1003  pyruvate formate lyase-activating enzyme 1  26.97 
 
 
265 aa  79.7  0.00000000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2672  pyruvate formate lyase-activating enzyme 1  26.56 
 
 
246 aa  79.7  0.00000000000005  Shewanella baltica OS155  Bacteria  normal  0.209524  n/a   
 
 
-
 
NC_011205  SeD_A1034  pyruvate formate lyase-activating enzyme 1  26.97 
 
 
265 aa  79.7  0.00000000000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.633483  normal  0.712061 
 
 
-
 
NC_012880  Dd703_2245  pyruvate formate lyase-activating enzyme 1  26.95 
 
 
246 aa  79.7  0.00000000000006  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4810  pyruvate formate-lyase-activating enzyme  25.97 
 
 
243 aa  79.3  0.00000000000007  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2474  pyruvate formate lyase-activating enzyme 1  26.72 
 
 
245 aa  79.3  0.00000000000008  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2679  pyruvate formate lyase-activating enzyme 1  26.54 
 
 
265 aa  79  0.00000000000009  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2591  pyruvate formate lyase-activating enzyme 1  28.86 
 
 
244 aa  78.2  0.0000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1618  pyruvate formate lyase-activating enzyme 1  28.86 
 
 
244 aa  78.2  0.0000000000001  Yersinia pestis Angola  Bacteria  normal  0.344326  normal 
 
 
-
 
NC_009674  Bcer98_0432  pyruvate formate-lyase activating enzyme  27.13 
 
 
243 aa  79  0.0000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0506  pyruvate formate-lyase activating enzyme  21.48 
 
 
238 aa  78.6  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0339577  n/a   
 
 
-
 
NC_009997  Sbal195_2770  pyruvate formate lyase-activating enzyme 1  26.56 
 
 
246 aa  77.8  0.0000000000002  Shewanella baltica OS195  Bacteria  normal  0.789492  normal  0.831123 
 
 
-
 
NC_011663  Sbal223_1693  pyruvate formate lyase-activating enzyme 1  26.56 
 
 
246 aa  77.8  0.0000000000002  Shewanella baltica OS223  Bacteria  hitchhiker  0.00927712  hitchhiker  0.00567391 
 
 
-
 
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